Rora

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Rora 0.04 0.03 1.2e-03 0.04 0.02 0.03 0.03 6.4e-04 4.6e-03 3.6e-03 1.5e-03
2 IC gene expression Rora 0.08 0.06 3.3e-03 0.05 0.04 0.03 0.04 2.8e-03 7.5e-03 2.6e-02 5.8e-03
3 Adipose mRNA stability Rora 0.08 0.06 4.2e-04 0.01 0.02 0.02 0.01 8.8e-03 3.2e-03 3.7e-03 4.6e-02
4 Brain mRNA stability Rora 0.05 0.03 2.1e-03 0.01 0.03 0.01 0.01 6.1e-02 1.2e-03 2.2e-02 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.70.60.7-0.3-0.8
Area under the delay curve0.30.41.1-0.3-0.5-1.1-0.1
BMI with tail3.913.427.2-5.2-5.1-0.1-0.5
BMI without tail1.23.77.8-2.8-2.6-0.2-0.4
Body weight2.08.711.9-3.4-3.4-2.2-2.6
Weight adjusted by age2.23.46.5-2.4-2.5-0.7-0.8
Bone surface0.10.20.3-0.5-0.40.60.0
Bone volume0.00.10.1-0.3-0.20.2-0.4
Breakpoint value in progressive ratio session0.91.12.3-0.8-0.71.50.9
Number of licking bursts1.32.13.61.91.90.40.9
Context. condit. distance diff. score0.30.40.80.20.10.80.9
Locomotion velocity, session 10.70.71.0-0.8-0.9-0.5-1.0
Locomotion distance, session 10.81.01.51.01.01.20.8
Locomotion velocity, session 20.60.71.4-1.1-1.20.3-0.4
Locomotion distance, session 20.00.00.10.10.0-0.0-0.3
Locomotion velocity, session 30.91.13.4-0.1-0.01.80.9
Locomotion distance, session 34.44.87.91.51.52.82.6
Stereotopy head waving bouts, day 30.50.61.3-0.2-0.20.91.1
Stereotopy head waving duration, day 30.40.50.7-0.8-0.8-0.5-0.6
Locomotion velocity, session 70.70.71.51.21.20.10.0
Locomotion distance, session 71.41.82.31.51.51.31.1
Stereotopy head waving bouts, day 71.21.42.6-1.6-1.6-0.8-0.0
Stereotopy head waving duration, day 71.41.72.1-1.5-1.4-1.3-0.8
Locomotion velocity, session 80.20.31.00.20.1-0.2-1.0
Locomotion distance, session 80.40.61.10.70.61.10.6
Degree of sensitization distance0.50.51.00.20.2-0.9-1.0
Degree of sensitization stereotypy1.41.52.5-1.6-1.6-1.0-0.4
Conditioned locomotion1.11.32.90.60.51.21.7
Cocaine response after cond. corrected3.23.95.8-2.4-2.41.80.9
Cocaine response after cond. not corrected1.92.23.0-1.7-1.71.50.7
Cocaine response before conditioning0.91.12.01.41.4-0.70.0
Saline control response0.20.20.70.40.30.20.8
Bone: connectivity density0.61.01.81.31.40.60.2
Bone: cortical apparent density0.70.92.20.70.6-1.5-0.9
Bone: cortical area0.10.10.20.50.4-0.2-0.2
Bone: cortical porosity2.12.23.21.21.2-1.8-1.6
Bone: cortical porosity2.22.43.41.21.3-1.8-1.7
Bone: cortical thickness1.01.72.71.61.6-1.2-0.5
Bone: cortical thickness1.41.71.81.31.3-1.3-1.2
Bone: cortical tissue density0.60.92.10.60.5-1.5-0.9
Condit. Reinf. active minus inactive responses1.82.04.5-0.8-0.8-2.1-1.5
Condit. Reinf. active-inactive response ratio1.21.33.3-0.3-0.4-1.8-1.3
Condit. Reinf. active responses1.72.23.6-1.2-1.2-1.9-1.5
Condit. Reinf. inactive responses0.30.40.8-0.9-0.8-0.2-0.4
Incentive salience index mean1.01.23.1-0.2-0.2-1.8-1.3
Condit. Reinf. lever presses0.20.30.50.70.7-0.5-0.1
Condit. Reinf. active minus inactive responses2.73.46.3-1.0-1.0-2.5-2.4
Condit. Reinf. active-inactive response ratio0.40.50.9-0.4-0.4-0.9-1.0
Condit. Reinf. active responses2.12.95.5-0.8-0.8-2.3-2.2
Condit. Reinf. inactive responses0.70.92.00.20.2-1.3-1.4
Condit. Reinf. lever presses2.83.86.81.11.1-2.6-2.5
Condit. Reinf. lever reinforcers received2.43.36.6-0.6-0.6-2.6-2.4
Conditioned reinforcement - actives0.71.12.1-0.7-0.81.51.1
Conditioned reinforcement - inactives0.30.40.70.50.60.80.7
Conditioned locomotion0.10.20.30.50.5-0.00.4
Patch foraging indifference point 0 sec0.91.73.2-0.9-0.81.81.5
Patch foraging indifference point AUC0.20.30.70.30.1-0.8-0.5
Delay disc. indifference point, 0s delay0.10.10.2-0.4-0.5-0.30.2
Delay disc. indifference point, 16s delay0.40.51.80.30.2-1.3-0.1
Delay disc. indifference point, 2s delay0.10.10.4-0.2-0.2-0.6-0.0
Delay disc. indifference point, 24s delay0.20.30.90.20.4-0.9-0.1
Delay disc. indifference point, 4s delay0.30.30.7-0.2-0.30.50.9
Delay disc. indifference point, 8s delay0.70.81.9-0.6-0.7-1.4-0.7
Indifference point function ln k1.01.82.8-1.7-1.51.30.8
Indifference point function log k1.01.82.8-1.7-1.51.30.8
Patch foraging total patch changes 0 sec1.01.93.1-1.0-1.01.81.5
Patch foraging total patch changes 12 sec0.10.20.30.60.4-0.4-0.3
Patch foraging total patch changes 18 sec0.10.10.40.30.2-0.10.6
Patch foraging total patch changes 24 sec0.30.41.60.20.10.41.3
Patch foraging total patch changes 6 sec2.43.76.2-1.1-1.22.42.5
Patch foraging time to switch 0 sec0.51.12.01.41.4-0.3-0.7
Patch foraging water rate 0 sec1.63.56.1-2.5-2.50.91.0
Patch foraging water rate 12 sec1.12.34.7-2.1-2.2-0.2-0.4
Patch foraging water rate 18 sec0.30.40.6-0.8-0.7-0.7-0.3
Patch foraging water rate 24 sec0.40.50.7-0.7-0.70.60.8
Patch foraging water rate 6 sec1.31.92.7-1.6-1.70.91.2
Seeking ratio, delayed vs. immediate footshock0.81.01.9-1.2-1.40.80.5
Distance traveled before self-admin0.20.20.4-0.6-0.70.2-0.0
Distance traveled after self-admin1.51.83.7-0.8-0.91.91.5
Extensor digitorum longus weight3.112.324.2-4.9-4.9-0.5-0.7
Bone: elastic displacement0.20.30.7-0.4-0.4-0.8-0.4
Bone: elastic work0.20.30.7-0.1-0.2-0.9-0.5
Bone: endosteal estimation1.12.54.1-2.0-2.01.40.4
Bone: endosteal perimeter1.22.65.1-2.2-2.30.4-0.7
Epididymis fat weight0.10.40.60.70.8-0.1-0.7
Delta time in closed arm before/after self-admin1.51.42.60.60.7-1.5-1.6
Delta time in open arm before/after self-admin6.76.716.40.80.64.03.1
Diff in mean of infusions in LGA sessions0.60.71.4-1.2-1.20.0-0.4
Delay discount exponential model param0.30.41.10.40.51.00.2
Extinction: sum of active levers before priming0.30.31.0-0.2-0.2-0.3-1.0
Active lever presses in extinction session 60.20.20.4-0.7-0.50.1-0.3
Bone: final force0.20.20.6-0.1-0.1-0.6-0.7
Bone: final moment0.40.61.10.30.2-1.0-1.1
Food consumed during 24 hour testing period0.91.22.2-1.5-1.50.40.6
Glucose0.40.61.2-0.7-0.70.31.1
Heart weight2.03.25.0-2.2-2.21.01.3
Delay discount hyperbolic model param0.30.30.80.30.50.90.0
Intermittent access intake day 1-15 change0.00.10.2-0.3-0.20.0-0.4
Intermittent access intake escalation0.10.10.4-0.00.0-0.3-0.6
Intermittent access intake escalation 20.60.71.1-1.1-1.10.60.2
Intermitt. access day 1 inactive lever presses0.72.54.72.22.20.20.7
Intermitt. access day 15 inactive lever presses0.51.02.20.30.61.21.5
Intermitt. access escalation Index1.52.13.2-1.3-1.31.51.8
Intermittent access day 1 total infusions0.71.12.11.51.4-0.30.3
Intermittent access day 15 total infusions1.01.52.41.51.5-0.8-0.6
Intermittent access terminal intake (last 3 days)0.10.20.30.60.50.10.2
Intermittent access total infusions0.30.30.60.80.7-0.2-0.1
Intermittent access day 1 locomotion2.12.75.32.32.2-0.6-0.3
Intermittent access day 15 total locomotion0.91.63.11.71.80.20.4
Intermittent access total locomotion0.10.10.20.20.20.40.3
Intermittent access standard deviation0.20.51.00.91.00.2-0.1
Left kidney weight0.31.63.0-1.7-1.6-0.3-0.8
Right kidney weight1.04.47.8-2.8-2.7-0.7-1.5
Cocaine induced anxiety0.20.30.70.20.2-0.7-0.9
Post-drug Anxiety1.41.52.71.11.1-0.7-1.6
Baseline Anxiety0.60.71.11.01.00.0-0.8
Tail length0.51.92.61.11.2-1.6-1.6
Length with tail0.83.57.60.10.1-2.5-2.8
Length without tail2.16.78.0-2.7-2.8-2.4-2.4
Times rat made contact with spout0.70.81.2-1.1-1.10.40.8
Lifetime Intake0.50.61.21.11.0-0.5-0.2
Liver weight, left1.42.24.4-2.1-2.10.30.4
Liver weight, right0.71.22.3-0.7-0.7-1.2-1.5
Locomotor activity2.13.36.5-2.5-2.6-0.4-0.2
Locomotor testing distance1.42.54.9-2.1-2.20.50.7
Locomotor testing rearing1.73.35.7-2.3-2.40.91.2
Locomotion in novel chamber0.10.10.4-0.3-0.30.60.1
Locomotion in novel chamber post-restriction0.81.21.81.01.0-1.3-1.1
Fecal boli incidents, locomotor time 10.30.40.8-0.9-0.8-0.10.0
Change in fecal boli incidents, locomotor task0.30.31.10.00.0-0.5-1.1
Time >=10cm from walls, locomotor time 10.20.30.5-0.3-0.30.70.6
Bouts of movement, locomotor time 11.51.73.7-0.2-0.2-1.9-1.8
Total resting periods, locomotor time 11.01.12.1-0.5-0.5-1.4-1.4
Rest time, locomotor task time 11.62.02.8-1.4-1.4-1.7-1.2
Distance moved, locomotor task time 10.71.11.81.31.30.70.5
Vertical activity count, locomotor time 10.81.93.80.90.92.01.6
Time >=10cm from walls, locomotor time 20.10.20.5-0.2-0.2-0.7-0.4
Bouts of movement, locomotor time 21.42.24.5-2.1-2.10.1-0.1
Total resting periods, locomotor time 21.42.44.7-2.2-2.1-0.3-0.5
Rest time, locomotor task time 20.20.20.60.10.1-0.8-0.5
Distance moved, locomotor task time 20.40.50.90.91.00.4-0.3
Vertical activity count, locomotor time 20.30.41.10.50.51.10.4
Light reinforcement 10.92.13.2-1.8-1.80.81.2
Light reinforcement 20.00.10.20.10.0-0.40.2
Bone: marrow area1.12.43.9-1.9-2.01.40.3
Bone: maximum diameter0.91.73.4-1.7-1.80.70.1
Bone: maximum force0.61.02.50.10.1-1.2-1.6
Bone: maximum moment0.91.63.70.40.4-1.6-1.9
Mean time between licks in bursts0.30.71.11.01.0-0.6-0.4
Mean num. licks in bursts2.03.16.0-2.5-2.4-0.4-0.3
Cd content in liver1.11.21.61.31.30.51.2
Co content in liver0.60.70.91.01.0-0.10.9
Cu content in liver1.01.22.4-0.7-0.71.51.2
Fe content in liver0.50.71.1-1.1-1.10.50.3
K content in liver1.11.01.9-1.4-1.40.50.2
Mg content in liver1.71.72.7-1.6-1.61.00.6
Mn content in liver0.40.40.90.30.3-0.7-0.9
Na content in liver4.14.48.0-2.8-2.81.10.6
Rb content in liver1.31.51.9-1.4-1.41.11.1
Se content in liver0.70.81.9-0.2-0.21.41.1
Sr content in liver0.30.20.50.10.1-0.7-0.7
Zn content in liver1.92.15.2-0.2-0.21.82.3
Bone: minimum diameter0.10.10.3-0.1-0.2-0.3-0.5
Time in familiar zone, hab. session 11.31.33.50.10.11.21.9
Time in novel zone, hab. session 12.22.24.7-0.6-0.6-1.9-2.2
Total zone transitions, hab. session 10.30.40.60.60.60.80.4
Total locomotion distance, hab. session 11.42.04.0-0.1-0.22.02.0
Locomotion velocity, hab. session 11.52.14.3-0.2-0.32.12.0
Time in familiar zone, hab. session 20.10.10.10.40.3-0.10.0
Time in novel zone, hab. session 20.10.10.3-0.3-0.2-0.6-0.1
Total zone transitions, hab. session 20.10.10.50.0-0.00.7-0.1
Total locomotion distance, hab. session 21.41.84.2-0.5-0.52.01.6
Locomotion velocity, hab. session 21.41.95.0-0.1-0.12.21.6
Novel to familiar place preference ratio1.71.92.5-1.2-1.2-1.5-1.6
Novelty place preference2.12.23.0-1.3-1.2-1.7-1.7
Time in novel zone, NPP test2.72.93.4-1.6-1.6-1.8-1.8
Total zone transitions, NPP test0.91.32.3-0.6-0.61.51.5
Total locomotion distance, NPP test1.92.54.4-0.9-1.02.12.0
Locomotion velocity, NPP test1.92.76.1-0.4-0.42.52.1
Intraocular pressure0.00.00.0-0.2-0.20.1-0.1
Delta distance traveled before/after self-admin0.50.51.2-0.2-0.31.10.9
Delta ambulatory time before/after self-admin0.20.30.60.20.10.70.6
Parametrial fat weight1.02.34.11.31.32.01.3
Pavlov. Cond. lever latency0.00.00.10.20.20.1-0.1
Pavlov. Cond. magazine entry latency0.81.11.41.11.1-1.2-0.7
Pavlov. Cond. change in total contacts0.10.10.30.20.3-0.5-0.4
Pavlov. Cond. index score0.70.81.31.11.1-0.7-0.6
Pavlov. Cond. latency score0.30.40.60.70.8-0.5-0.4
Pavlov. Cond. lever contacts0.00.00.10.30.3-0.10.1
Pavlov. Cond. magazine entry number1.51.92.1-1.4-1.41.31.3
Pavlov. Cond. intertrial magazine entries0.91.02.0-0.7-0.71.11.4
Pavlov. Cond. lever-magazine prob. diff.0.50.61.01.01.0-0.5-0.4
Pavlov. Cond. response bias0.91.21.90.90.9-1.4-1.0
Pavlov. Cond. lever latency0.50.71.5-0.2-0.21.21.1
Pavlov. Cond. magazine entry latency0.81.01.01.01.01.01.0
Pavlov. Cond. change in total contacts0.20.30.50.50.4-0.5-0.7
Pavlov. Cond. index score0.20.20.40.60.6-0.2-0.4
Pavlov. Cond. latency score0.00.00.10.20.20.20.0
Pavlov. Cond. lever contacts0.40.51.00.10.0-1.0-1.0
Pavlov. Cond. magazine entry number0.91.21.6-1.3-1.2-0.9-0.8
Pavlov. Cond. intertrial magazine entries1.42.14.4-0.10.0-2.0-2.1
Pavlov. Cond. lever-magazine prob. diff.0.20.30.50.70.7-0.2-0.3
Pavlov. Cond. response bias0.40.60.70.80.8-0.8-0.8
Time in closed arm before self-admin0.10.10.20.50.3-0.10.3
Time in closed arm after self-admin2.32.43.71.11.1-1.9-1.9
Time in open arm before self-admin1.41.53.1-1.8-1.60.40.3
Time in open arm after self-admin6.57.116.3-1.0-1.14.03.1
Bone: periosteal estimation0.61.22.0-1.3-1.40.90.2
Bone: periosteal perimeter0.81.42.8-1.6-1.70.4-0.3
Bone: post-yield work1.01.42.70.60.6-1.6-1.5
Progressive ratio test 1 active lever presses1.11.42.60.50.51.61.6
Progressive ratio test 1 breakpoint1.41.73.20.60.41.71.8
Progressive ratio test 1 inactive lever presses1.11.62.41.61.41.20.9
Progressive ratio test 2 active lever presses1.51.83.7-0.5-0.31.81.9
Progressive ratio test 2 breakpoint1.41.63.4-0.4-0.31.71.9
Progressive ratio test 2 inactive lever presses0.71.12.60.60.71.11.6
Incentive Sensitization - Responses0.81.12.0-0.7-0.51.41.3
Incentive Sensitization - Breakpoint0.70.91.7-0.6-0.41.31.2
Sum of active levers in priming session hrs 5-60.80.71.4-0.6-0.51.20.9
Progressive ratio0.10.20.30.50.50.30.6
Food seeking constrained by brief footshock0.10.10.2-0.5-0.5-0.30.2
Seeking ratio, punishment vs. effort0.60.91.7-1.3-1.3-0.1-0.3
Retroperitoneal fat weight0.10.30.50.70.60.50.2
Reaction time number correct0.71.32.2-0.8-0.8-1.2-1.5
Reaction time mean minus median0.10.40.80.1-0.0-0.9-0.8
Reaction time mean minus median AUC0.20.41.20.30.1-1.1-0.6
Reaction time num false alarms1.72.33.81.01.12.01.8
Reaction time num false alarms AUC1.01.52.21.01.11.51.3
Reaction time trials correct on left0.71.32.2-0.8-0.8-1.2-1.5
Reaction time trials on left0.81.52.6-0.9-0.8-1.4-1.6
Reaction time mean0.20.30.60.80.7-0.10.1
Reaction time mean AUC0.00.10.10.40.4-0.00.1
Median of all reaction times0.50.71.41.21.20.00.3
Reaction time omissions2.43.47.6-0.4-0.5-2.4-2.7
Reaction time false alarm rate2.02.73.81.31.31.91.9
Reaction time premature initiation rate0.50.71.1-0.9-1.01.10.3
Reaction time premature initiations0.40.71.2-1.1-1.10.1-0.7
Std. dev. reaction times0.10.10.30.20.2-0.5-0.5
Reaction time trials completed0.81.52.6-0.9-0.8-1.4-1.6
Reaction time trials AUC0.81.62.8-0.9-0.8-1.4-1.7
Run reversals in cocaine runway, females0.40.30.70.80.8-0.1-0.2
Run reversals in cocaine runway, males0.00.00.0-0.1-0.10.0-0.1
Latency to leave start box in cocaine runway2.63.03.4-1.7-1.81.61.7
Latency to leave start box in cocaine runway, F0.80.91.3-1.0-1.10.61.0
Latency to leave start box in cocaine runway, M2.92.73.5-1.9-1.91.61.1
Std. dev. time between licks in bursts0.10.10.20.50.5-0.2-0.1
Total sessions with >9 infusions0.50.61.21.11.1-0.00.1
Short access day 1 total inactive lever presses0.91.22.41.51.4-0.5-0.5
Short access day 10 total inactive lever presses0.30.71.51.11.20.30.3
Short access day 1 total infusions0.60.81.71.31.1-0.4-0.3
Short access day 10 total infusions1.01.21.81.41.30.61.1
Short access total infusions1.01.32.81.71.6-0.20.2
Short access day 1 locomotion0.20.20.40.50.5-0.6-0.2
Short access day 10 total locomotion0.50.81.31.21.10.50.7
Short access total locomotion0.60.71.61.31.2-0.10.1
One hour access (0.3 mA shock)0.60.71.2-0.6-0.61.01.1
Compulsive drug intake0.60.71.2-1.1-1.00.70.3
One hour access (shock baseline)0.10.10.30.20.20.30.5
Social response proportion1.31.42.70.70.6-1.5-1.6
Social responses0.40.50.70.60.5-0.8-0.8
Social time0.40.51.10.20.20.91.0
Soleus weight7.020.640.5-6.4-6.41.20.2
Bone: stiffness0.20.41.3-0.1-0.1-0.4-1.1
Tibialis anterior weight4.515.230.5-5.5-5.50.4-0.2
Time to tail flick, vehicle, before self-admin0.40.41.00.10.1-1.0-0.7
Time to tail flick, vehicle, after self-admin0.10.10.30.20.40.60.1
Time to tail flick, test, before self-admin2.62.74.61.41.5-2.1-1.5
Time to tail flick, test, after self-admin1.21.22.60.40.3-1.6-1.4
Delta time to tail flick, vehicle, before/after SA0.30.30.50.40.50.70.5
Delta time to tail flick, test, before/after SA0.50.50.9-0.9-1.00.60.3
Tibia length0.10.30.50.30.2-0.7-0.7
Ambulatory time before self-admin0.10.10.2-0.4-0.40.2-0.2
Ambulatory time after self-admin0.50.61.9-0.3-0.41.40.7
Bone: tissue strength0.60.60.90.90.90.50.5
Total heroin consumption0.80.91.7-1.3-1.20.60.2
Bone: trabecular number0.71.12.21.41.50.2-0.4
Bone: trabecular spacing0.20.30.5-0.4-0.40.60.7
Bone: trabecular thickness0.60.81.11.01.1-0.7-0.8
Bone: trabecular tissue density1.01.51.9-1.2-1.3-1.0-1.4
Water consumed over 24 hours0.20.20.4-0.7-0.6-0.20.2
Number of responses in last shaping day0.00.10.20.0-0.1-0.40.0