Rhog

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Rhog 0.18 0.09 1.8e-15 0.12 0.12 0.11 0.11 4.4e-13 4.3e-13 2.4e-12 1.3e-12
2 Adipose gene expression Rhog 0.03 0.02 9.0e-03 0.01 0 0 0 1.2e-02 2.2e-01 2.9e-01 7.2e-02
3 Liver mRNA stability Rhog 0.05 0.05 7.8e-03 0.02 0.01 0 0.01 4.7e-03 2.8e-02 3.6e-01 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.71.4-0.50.71.2
Area under the delay curve0.80.80.9-0.90.90.9
BMI with tail0.10.40.7-0.70.80.3
BMI without tail0.91.82.51.2-1.2-1.6
Body weight0.93.68.80.9-1.1-3.0
Weight adjusted by age1.82.12.51.4-1.6-1.4
Bone surface0.30.60.91.0-0.9-0.1
Bone volume0.20.30.40.7-0.6-0.2
Breakpoint value in progressive ratio session0.60.71.1-0.50.81.0
Number of licking bursts3.33.96.1-2.52.30.6
Context. condit. distance diff. score2.73.25.22.3-2.1-0.3
Locomotion velocity, session 11.11.12.0-0.71.01.4
Locomotion distance, session 10.30.40.50.7-0.60.5
Locomotion velocity, session 20.20.20.70.10.20.8
Locomotion distance, session 20.10.10.20.5-0.30.3
Locomotion velocity, session 30.50.50.90.9-0.80.4
Locomotion distance, session 30.80.91.21.1-0.90.8
Stereotopy head waving bouts, day 30.20.30.7-0.1-0.1-0.9
Stereotopy head waving duration, day 30.20.20.30.6-0.5-0.1
Locomotion velocity, session 70.30.40.8-0.30.50.9
Locomotion distance, session 70.20.20.3-0.50.5-0.2
Stereotopy head waving bouts, day 72.62.94.62.2-2.00.2
Stereotopy head waving duration, day 72.63.15.02.2-2.10.2
Locomotion velocity, session 81.01.22.11.4-1.20.0
Locomotion distance, session 82.02.94.62.1-2.0-0.5
Degree of sensitization distance1.11.23.1-0.50.4-1.7
Degree of sensitization stereotypy4.95.38.52.9-2.70.1
Conditioned locomotion0.40.40.6-0.70.6-0.6
Cocaine response after cond. corrected1.01.11.9-1.41.20.1
Cocaine response after cond. not corrected0.60.60.8-0.90.90.5
Cocaine response before conditioning1.01.31.81.4-1.10.9
Saline control response2.63.43.61.9-1.9-1.8
Bone: connectivity density1.01.64.2-0.40.72.0
Bone: cortical apparent density1.01.31.9-1.41.2-0.8
Bone: cortical area0.40.61.10.6-0.6-1.0
Bone: cortical porosity0.10.10.20.4-0.30.4
Bone: cortical porosity0.10.20.20.4-0.40.4
Bone: cortical thickness0.20.30.5-0.60.70.4
Bone: cortical thickness0.00.00.00.1-0.1-0.1
Bone: cortical tissue density1.01.31.9-1.41.2-0.7
Condit. Reinf. active minus inactive responses1.21.41.90.9-1.2-1.4
Condit. Reinf. active-inactive response ratio1.71.92.51.1-1.4-1.6
Condit. Reinf. active responses0.30.30.70.2-0.4-0.9
Condit. Reinf. inactive responses0.30.40.6-0.80.70.2
Incentive salience index mean0.50.50.90.5-0.7-0.9
Condit. Reinf. lever presses0.00.00.1-0.1-0.00.3
Condit. Reinf. active minus inactive responses7.59.312.03.5-3.4-2.2
Condit. Reinf. active-inactive response ratio1.31.42.11.5-1.3-0.4
Condit. Reinf. active responses9.813.616.04.0-3.9-3.0
Condit. Reinf. inactive responses6.07.37.62.7-2.8-2.7
Condit. Reinf. lever presses14.019.025.95.1-4.8-2.7
Condit. Reinf. lever reinforcers received10.114.217.64.2-4.1-2.8
Conditioned reinforcement - actives0.20.20.30.4-0.20.5
Conditioned reinforcement - inactives0.30.40.5-0.70.4-0.7
Conditioned locomotion0.60.81.31.2-0.80.6
Patch foraging indifference point 0 sec2.03.34.72.2-2.1-0.9
Patch foraging indifference point AUC0.70.81.10.7-1.0-1.0
Delay disc. indifference point, 0s delay0.30.40.60.7-0.7-0.2
Delay disc. indifference point, 16s delay0.50.50.7-0.80.70.6
Delay disc. indifference point, 2s delay0.30.30.30.5-0.6-0.5
Delay disc. indifference point, 24s delay1.41.42.2-1.51.30.5
Delay disc. indifference point, 4s delay0.50.50.50.7-0.7-0.7
Delay disc. indifference point, 8s delay0.80.80.9-0.81.00.9
Indifference point function ln k0.10.20.40.4-0.20.6
Indifference point function log k0.10.20.40.4-0.20.6
Patch foraging total patch changes 0 sec1.72.73.82.0-1.8-0.9
Patch foraging total patch changes 12 sec1.51.92.21.3-1.4-1.5
Patch foraging total patch changes 18 sec0.91.21.71.2-1.3-0.6
Patch foraging total patch changes 24 sec2.02.52.71.4-1.6-1.6
Patch foraging total patch changes 6 sec1.21.82.41.4-1.6-1.0
Patch foraging time to switch 0 sec3.96.17.9-2.72.81.7
Patch foraging water rate 0 sec3.04.86.12.4-2.5-1.6
Patch foraging water rate 12 sec1.42.13.11.8-1.7-0.6
Patch foraging water rate 18 sec2.73.65.02.2-2.0-1.4
Patch foraging water rate 24 sec0.10.20.40.6-0.4-0.1
Patch foraging water rate 6 sec0.50.71.21.1-0.90.1
Seeking ratio, delayed vs. immediate footshock2.52.93.5-1.61.61.9
Distance traveled before self-admin0.60.60.7-0.80.70.8
Distance traveled after self-admin0.20.20.40.4-0.30.6
Extensor digitorum longus weight0.10.30.5-0.70.7-0.2
Bone: elastic displacement1.92.22.5-1.51.61.3
Bone: elastic work3.13.94.2-1.92.02.0
Bone: endosteal estimation1.12.53.11.4-1.5-1.8
Bone: endosteal perimeter1.63.33.51.8-1.9-1.7
Epididymis fat weight0.40.91.2-0.80.8-1.1
Delta time in closed arm before/after self-admin0.80.81.1-0.90.7-1.1
Delta time in open arm before/after self-admin2.72.64.01.7-2.0-0.9
Diff in mean of infusions in LGA sessions1.01.11.9-1.41.0-0.5
Delay discount exponential model param1.11.21.21.1-1.1-1.1
Extinction: sum of active levers before priming0.30.20.5-0.50.70.1
Active lever presses in extinction session 61.41.31.81.3-1.20.8
Bone: final force0.20.40.6-0.60.5-0.8
Bone: final moment0.20.30.8-0.30.2-0.9
Food consumed during 24 hour testing period2.02.44.02.0-1.80.0
Glucose0.20.41.10.00.11.0
Heart weight1.42.02.71.5-1.6-1.1
Delay discount hyperbolic model param0.60.70.70.8-0.8-0.8
Intermittent access intake day 1-15 change0.50.50.90.9-0.90.1
Intermittent access intake escalation0.40.40.50.7-0.70.3
Intermittent access intake escalation 20.00.00.0-0.20.1-0.2
Intermitt. access day 1 inactive lever presses0.80.91.6-1.30.9-0.5
Intermitt. access day 15 inactive lever presses0.70.81.30.8-1.1-0.7
Intermitt. access escalation Index0.20.20.50.0-0.2-0.7
Intermittent access day 1 total infusions0.50.60.90.9-0.8-0.3
Intermittent access day 15 total infusions0.40.50.70.9-0.9-0.1
Intermittent access terminal intake (last 3 days)0.40.40.60.8-0.7-0.3
Intermittent access total infusions0.20.20.30.6-0.5-0.1
Intermittent access day 1 locomotion0.10.10.3-0.10.10.6
Intermittent access day 15 total locomotion0.50.60.70.8-0.70.8
Intermittent access total locomotion0.30.30.50.7-0.60.2
Intermittent access standard deviation0.10.10.1-0.30.30.1
Left kidney weight1.64.45.71.8-2.0-2.4
Right kidney weight1.02.94.51.3-1.5-2.1
Cocaine induced anxiety2.32.64.3-2.11.90.1
Post-drug Anxiety0.50.61.5-0.50.1-1.2
Baseline Anxiety2.72.84.01.8-2.0-1.2
Tail length6.419.526.63.8-4.2-5.2
Length with tail3.713.424.32.6-3.0-4.9
Length without tail0.10.30.4-0.60.4-0.5
Times rat made contact with spout0.20.20.3-0.60.5-0.2
Lifetime Intake0.50.50.90.9-0.9-0.2
Liver weight, left1.32.02.9-1.71.6-0.8
Liver weight, right1.22.13.8-1.30.9-1.9
Locomotor activity0.40.60.80.9-0.7-0.7
Locomotor testing distance1.42.43.51.9-1.6-1.1
Locomotor testing rearing0.71.11.21.1-0.9-1.1
Locomotion in novel chamber0.50.61.0-0.50.71.0
Locomotion in novel chamber post-restriction0.60.71.20.8-0.51.1
Fecal boli incidents, locomotor time 11.92.12.6-1.61.61.1
Change in fecal boli incidents, locomotor task0.00.00.00.20.00.1
Time >=10cm from walls, locomotor time 10.50.50.70.9-0.8-0.3
Bouts of movement, locomotor time 10.20.20.60.3-0.8-0.1
Total resting periods, locomotor time 10.10.10.2-0.2-0.20.5
Rest time, locomotor task time 10.00.00.00.0-0.00.0
Distance moved, locomotor task time 10.00.00.10.00.0-0.3
Vertical activity count, locomotor time 10.10.10.3-0.20.1-0.5
Time >=10cm from walls, locomotor time 22.93.13.61.8-1.9-1.6
Bouts of movement, locomotor time 20.20.20.5-0.1-0.2-0.7
Total resting periods, locomotor time 20.10.20.3-0.50.3-0.3
Rest time, locomotor task time 22.73.14.0-2.02.01.1
Distance moved, locomotor task time 22.63.03.82.0-1.9-1.2
Vertical activity count, locomotor time 20.30.40.50.5-0.5-0.7
Light reinforcement 12.24.05.3-2.12.31.5
Light reinforcement 21.11.53.8-0.40.82.0
Bone: marrow area0.92.02.81.2-1.3-1.7
Bone: maximum diameter1.93.64.02.0-2.0-1.7
Bone: maximum force0.10.10.3-0.20.2-0.5
Bone: maximum moment0.10.10.30.0-0.0-0.5
Mean time between licks in bursts7.410.412.82.9-3.1-3.6
Mean num. licks in bursts2.63.15.02.2-2.0-0.6
Cd content in liver0.60.71.0-1.01.00.3
Co content in liver2.42.83.11.6-1.8-1.7
Cu content in liver1.21.41.61.1-1.2-1.3
Fe content in liver0.00.00.0-0.2-0.0-0.1
K content in liver0.40.40.7-0.80.7-0.3
Mg content in liver0.00.00.00.1-0.1-0.1
Mn content in liver2.93.33.6-1.71.91.8
Na content in liver0.20.30.30.5-0.40.6
Rb content in liver0.40.50.80.8-0.9-0.1
Se content in liver4.85.97.0-2.62.62.0
Sr content in liver0.20.20.50.4-0.10.7
Zn content in liver2.12.33.61.9-1.7-0.5
Bone: minimum diameter1.01.94.20.8-0.9-2.1
Time in familiar zone, hab. session 10.20.20.30.5-0.3-0.5
Time in novel zone, hab. session 10.10.10.3-0.50.3-0.1
Total zone transitions, hab. session 10.30.40.80.4-0.30.9
Total locomotion distance, hab. session 10.81.13.3-0.20.2-1.8
Locomotion velocity, hab. session 10.60.82.4-0.30.3-1.5
Time in familiar zone, hab. session 23.63.74.01.9-1.9-2.0
Time in novel zone, hab. session 22.02.02.9-1.21.31.7
Total zone transitions, hab. session 22.33.04.42.1-2.0-0.5
Total locomotion distance, hab. session 22.33.07.00.9-1.0-2.7
Locomotion velocity, hab. session 22.22.97.30.8-0.9-2.7
Novel to familiar place preference ratio0.80.92.00.3-0.7-1.4
Novelty place preference0.90.92.00.3-0.7-1.4
Time in novel zone, NPP test1.21.22.50.6-0.9-1.6
Total zone transitions, NPP test0.30.41.10.2-0.01.0
Total locomotion distance, NPP test0.40.61.3-0.40.5-1.1
Locomotion velocity, NPP test0.40.60.7-0.80.8-0.8
Intraocular pressure0.70.92.70.1-0.01.7
Delta distance traveled before/after self-admin2.02.22.71.7-1.5-1.2
Delta ambulatory time before/after self-admin1.41.52.31.5-1.4-0.6
Parametrial fat weight0.61.21.2-1.11.11.1
Pavlov. Cond. lever latency0.50.71.0-0.91.00.3
Pavlov. Cond. magazine entry latency2.83.64.82.2-2.2-1.2
Pavlov. Cond. change in total contacts1.01.01.61.2-1.2-0.4
Pavlov. Cond. index score1.82.33.31.8-1.8-0.6
Pavlov. Cond. latency score1.62.02.91.7-1.7-0.5
Pavlov. Cond. lever contacts0.50.61.00.9-1.0-0.2
Pavlov. Cond. magazine entry number2.32.94.2-2.02.00.6
Pavlov. Cond. intertrial magazine entries0.91.11.4-1.21.20.8
Pavlov. Cond. lever-magazine prob. diff.1.41.82.61.6-1.6-0.4
Pavlov. Cond. response bias0.91.01.51.2-1.2-0.5
Pavlov. Cond. lever latency15.721.229.7-5.55.12.8
Pavlov. Cond. magazine entry latency2.93.45.82.4-2.0-0.6
Pavlov. Cond. change in total contacts13.218.227.05.2-4.8-2.2
Pavlov. Cond. index score11.414.721.54.6-4.2-2.2
Pavlov. Cond. latency score9.912.418.64.3-3.9-1.8
Pavlov. Cond. lever contacts16.422.331.25.6-5.3-2.8
Pavlov. Cond. magazine entry number5.87.111.4-3.43.00.9
Pavlov. Cond. intertrial magazine entries0.40.51.10.3-0.6-1.0
Pavlov. Cond. lever-magazine prob. diff.11.414.520.94.6-4.2-2.3
Pavlov. Cond. response bias16.322.231.95.6-5.3-2.6
Time in closed arm before self-admin1.71.93.11.8-1.6-0.1
Time in closed arm after self-admin0.30.30.5-0.70.70.3
Time in open arm before self-admin5.05.57.8-2.82.71.1
Time in open arm after self-admin0.10.10.2-0.0-0.2-0.4
Bone: periosteal estimation0.71.52.11.1-1.1-1.4
Bone: periosteal perimeter1.22.02.21.4-1.4-1.5
Bone: post-yield work0.10.10.20.4-0.3-0.2
Progressive ratio test 1 active lever presses0.00.00.10.1-0.10.3
Progressive ratio test 1 breakpoint0.00.00.00.1-0.10.2
Progressive ratio test 1 inactive lever presses0.00.00.00.0-0.20.0
Progressive ratio test 2 active lever presses0.00.00.10.3-0.20.1
Progressive ratio test 2 breakpoint0.10.10.10.4-0.3-0.0
Progressive ratio test 2 inactive lever presses0.00.00.10.2-0.30.0
Incentive Sensitization - Responses0.30.30.50.7-0.6-0.4
Incentive Sensitization - Breakpoint0.20.20.30.6-0.5-0.2
Sum of active levers in priming session hrs 5-60.00.00.10.3-0.20.1
Progressive ratio0.00.00.00.2-0.20.2
Food seeking constrained by brief footshock2.42.93.61.6-1.6-1.9
Seeking ratio, punishment vs. effort0.70.91.40.9-0.7-1.2
Retroperitoneal fat weight1.13.54.0-2.01.7-1.9
Reaction time number correct0.10.10.30.0-0.00.6
Reaction time mean minus median0.50.71.20.7-0.7-1.1
Reaction time mean minus median AUC0.30.40.50.6-0.5-0.7
Reaction time num false alarms1.82.53.9-2.01.90.0
Reaction time num false alarms AUC1.82.53.8-2.01.90.3
Reaction time trials correct on left0.10.10.30.0-0.00.6
Reaction time trials on left0.10.10.4-0.00.00.6
Reaction time mean1.41.93.0-1.71.6-0.4
Reaction time mean AUC1.62.23.5-1.91.8-0.1
Median of all reaction times2.33.14.9-2.22.10.0
Reaction time omissions0.81.01.5-1.21.20.5
Reaction time false alarm rate1.82.43.7-1.91.90.1
Reaction time premature initiation rate2.63.55.71.5-1.6-2.4
Reaction time premature initiations1.41.92.91.2-1.2-1.7
Std. dev. reaction times0.40.51.4-0.30.2-1.2
Reaction time trials completed0.10.10.4-0.00.00.6
Reaction time trials AUC0.00.00.10.0-0.10.3
Run reversals in cocaine runway, females1.21.22.80.6-0.6-1.7
Run reversals in cocaine runway, males0.50.50.6-0.80.60.8
Latency to leave start box in cocaine runway1.41.52.4-1.41.50.5
Latency to leave start box in cocaine runway, F0.90.91.4-1.11.2-0.5
Latency to leave start box in cocaine runway, M1.91.83.1-1.01.21.8
Std. dev. time between licks in bursts2.22.75.41.0-1.2-2.3
Total sessions with >9 infusions1.51.63.01.7-1.20.6
Short access day 1 total inactive lever presses0.20.20.5-0.70.2-0.2
Short access day 10 total inactive lever presses0.50.51.0-1.00.80.1
Short access day 1 total infusions1.11.21.71.3-1.2-0.5
Short access day 10 total infusions0.70.81.31.1-1.0-0.4
Short access total infusions1.01.11.61.2-1.3-0.5
Short access day 1 locomotion0.50.61.20.6-0.41.1
Short access day 10 total locomotion0.20.20.4-0.10.40.6
Short access total locomotion0.30.30.8-0.00.40.9
One hour access (0.3 mA shock)0.30.30.60.8-0.6-0.1
Compulsive drug intake0.30.30.5-0.50.30.7
One hour access (shock baseline)0.50.60.80.9-0.7-0.7
Social response proportion0.40.41.0-0.50.2-1.0
Social responses0.60.82.0-0.60.3-1.4
Social time2.73.54.3-1.92.11.7
Soleus weight0.41.12.9-0.60.4-1.7
Bone: stiffness0.50.81.8-0.70.4-1.4
Tibialis anterior weight0.20.51.30.3-0.4-1.2
Time to tail flick, vehicle, before self-admin0.70.81.00.7-1.0-0.9
Time to tail flick, vehicle, after self-admin1.21.22.01.4-1.3-0.2
Time to tail flick, test, before self-admin2.32.33.31.6-1.8-1.0
Time to tail flick, test, after self-admin3.94.05.91.5-1.9-2.4
Delta time to tail flick, vehicle, before/after SA0.30.30.60.5-0.10.8
Delta time to tail flick, test, before/after SA0.30.20.5-0.30.2-0.7
Tibia length0.41.01.61.3-1.20.2
Ambulatory time before self-admin1.01.01.1-1.01.11.0
Ambulatory time after self-admin0.30.30.40.6-0.40.7
Bone: tissue strength1.21.22.9-0.50.71.7
Total heroin consumption0.50.61.01.0-0.9-0.3
Bone: trabecular number1.92.94.1-1.41.72.0
Bone: trabecular spacing0.40.50.70.9-0.80.0
Bone: trabecular thickness0.20.30.8-0.20.1-0.9
Bone: trabecular tissue density1.21.73.5-1.00.7-1.9
Water consumed over 24 hours0.50.70.9-0.90.90.5
Number of responses in last shaping day0.10.10.1-0.20.2-0.3