Rab40b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC gene expression Rab40b 0.33 0.16 1.7e-03 0.02 0.04 0.06 0.05 1.1e-01 4.1e-02 1.8e-02 2.3e-02
2 Liver gene expression Rab40b 0.2 0.07 7.9e-14 0.13 0.12 0.13 0.13 3.2e-14 6.6e-13 7.2e-14 4.3e-14
3 Brain mRNA stability Rab40b 0.1 0.05 2.1e-06 0.04 0.07 0.06 0.06 6.9e-05 6.6e-07 7.9e-06 2.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.00.10.20.1
Area under the delay curve0.10.10.2-0.5-0.3-0.1
BMI with tail1.24.06.52.6-1.91.3
BMI without tail2.55.27.3-1.92.7-2.1
Body weight1.14.47.22.7-1.61.8
Weight adjusted by age1.31.41.91.4-0.71.4
Bone surface0.20.30.6-0.40.8-0.2
Bone volume0.10.20.4-0.20.6-0.2
Breakpoint value in progressive ratio session0.60.71.20.5-1.10.8
Number of licking bursts0.40.40.5-0.50.7-0.7
Context. condit. distance diff. score2.22.74.3-1.22.1-1.5
Locomotion velocity, session 11.92.02.31.5-1.51.3
Locomotion distance, session 10.10.10.30.0-0.3-0.6
Locomotion velocity, session 20.20.30.7-0.1-0.9-0.1
Locomotion distance, session 20.20.20.4-0.50.1-0.7
Locomotion velocity, session 30.70.81.50.4-1.20.9
Locomotion distance, session 30.30.30.70.1-0.90.3
Stereotopy head waving bouts, day 31.01.11.51.1-1.20.9
Stereotopy head waving duration, day 30.50.61.10.8-1.00.5
Locomotion velocity, session 70.20.20.3-0.60.1-0.5
Locomotion distance, session 71.51.92.5-1.51.0-1.6
Stereotopy head waving bouts, day 70.40.40.60.8-0.70.3
Stereotopy head waving duration, day 70.40.50.70.8-0.70.6
Locomotion velocity, session 80.00.00.0-0.1-0.1-0.2
Locomotion distance, session 82.43.53.9-1.62.0-2.0
Degree of sensitization distance2.12.13.0-1.31.7-1.3
Degree of sensitization stereotypy0.20.20.40.6-0.40.2
Conditioned locomotion0.80.92.1-0.61.4-0.5
Cocaine response after cond. corrected0.50.61.00.5-1.00.7
Cocaine response after cond. not corrected0.20.30.70.2-0.80.3
Cocaine response before conditioning0.70.91.1-1.00.7-1.0
Saline control response0.40.50.8-0.80.90.1
Bone: connectivity density0.50.80.9-1.00.9-0.7
Bone: cortical apparent density0.20.20.7-0.0-0.80.2
Bone: cortical area8.713.116.34.0-3.33.5
Bone: cortical porosity3.53.84.02.0-2.01.8
Bone: cortical porosity2.52.72.91.7-1.61.6
Bone: cortical thickness16.126.531.45.6-4.94.9
Bone: cortical thickness10.111.814.03.7-3.72.7
Bone: cortical tissue density0.10.20.5-0.2-0.70.1
Condit. Reinf. active minus inactive responses0.10.10.10.30.30.3
Condit. Reinf. active-inactive response ratio0.40.40.70.6-0.50.8
Condit. Reinf. active responses0.30.41.1-0.11.1-0.3
Condit. Reinf. inactive responses0.91.12.3-0.61.5-0.8
Incentive salience index mean0.20.20.6-0.20.8-0.3
Condit. Reinf. lever presses1.11.41.8-1.11.1-1.4
Condit. Reinf. active minus inactive responses0.81.01.51.2-0.41.1
Condit. Reinf. active-inactive response ratio2.02.13.31.8-0.91.5
Condit. Reinf. active responses0.10.20.30.50.00.6
Condit. Reinf. inactive responses0.10.10.3-0.60.3-0.1
Condit. Reinf. lever presses0.30.40.5-0.70.7-0.6
Condit. Reinf. lever reinforcers received0.00.00.10.20.20.2
Conditioned reinforcement - actives0.60.60.9-0.80.6-1.0
Conditioned reinforcement - inactives0.20.20.5-0.7-0.2-0.1
Conditioned locomotion1.01.22.5-1.60.5-0.9
Patch foraging indifference point 0 sec0.20.30.5-0.70.5-0.0
Patch foraging indifference point AUC0.20.20.4-0.10.7-0.5
Delay disc. indifference point, 0s delay0.60.70.80.9-0.80.8
Delay disc. indifference point, 16s delay1.81.82.6-1.60.7-1.5
Delay disc. indifference point, 2s delay0.10.10.30.1-0.50.2
Delay disc. indifference point, 24s delay0.40.41.1-0.1-1.00.3
Delay disc. indifference point, 4s delay0.30.30.40.2-0.60.7
Delay disc. indifference point, 8s delay0.60.60.70.6-0.80.8
Indifference point function ln k0.30.40.60.5-0.80.5
Indifference point function log k0.30.40.60.5-0.80.5
Patch foraging total patch changes 0 sec0.20.30.7-0.80.5-0.0
Patch foraging total patch changes 12 sec0.10.20.3-0.50.4-0.2
Patch foraging total patch changes 18 sec1.01.32.1-1.41.1-0.8
Patch foraging total patch changes 24 sec0.20.20.4-0.60.60.0
Patch foraging total patch changes 6 sec0.00.10.1-0.30.30.0
Patch foraging time to switch 0 sec0.10.20.3-0.5-0.1-0.5
Patch foraging water rate 0 sec0.20.40.9-0.50.9-0.0
Patch foraging water rate 12 sec0.30.40.70.9-0.60.4
Patch foraging water rate 18 sec0.00.00.1-0.10.2-0.2
Patch foraging water rate 24 sec0.10.10.2-0.50.4-0.1
Patch foraging water rate 6 sec0.50.71.10.8-1.10.7
Seeking ratio, delayed vs. immediate footshock0.10.10.10.30.30.3
Distance traveled before self-admin0.70.81.70.4-0.61.3
Distance traveled after self-admin4.65.26.5-2.42.6-1.8
Extensor digitorum longus weight0.31.32.0-0.21.4-1.3
Bone: elastic displacement1.11.21.41.1-1.01.2
Bone: elastic work9.812.715.84.0-2.93.7
Bone: endosteal estimation1.32.82.9-1.61.7-1.7
Bone: endosteal perimeter0.20.40.9-0.41.00.0
Epididymis fat weight0.10.20.40.10.5-0.6
Delta time in closed arm before/after self-admin0.10.10.20.50.2-0.2
Delta time in open arm before/after self-admin0.50.51.4-1.20.1-0.4
Diff in mean of infusions in LGA sessions0.20.20.3-0.60.3-0.3
Delay discount exponential model param0.10.10.30.40.5-0.0
Extinction: sum of active levers before priming3.03.04.41.7-2.11.3
Active lever presses in extinction session 63.03.05.41.1-2.31.5
Bone: final force6.911.213.63.7-3.33.0
Bone: final moment7.512.215.33.9-3.23.3
Food consumed during 24 hour testing period0.60.71.8-0.41.4-0.4
Glucose5.78.513.52.4-3.72.6
Heart weight2.23.14.32.1-1.91.2
Delay discount hyperbolic model param0.10.10.30.40.5-0.1
Intermittent access intake day 1-15 change2.12.13.6-1.91.5-0.7
Intermittent access intake escalation3.63.55.9-2.41.8-1.2
Intermittent access intake escalation 20.50.51.4-1.20.40.1
Intermitt. access day 1 inactive lever presses0.10.10.20.1-0.10.4
Intermitt. access day 15 inactive lever presses0.91.02.3-1.50.6-0.5
Intermitt. access escalation Index1.41.22.5-0.41.6-1.0
Intermittent access day 1 total infusions0.10.10.10.3-0.2-0.2
Intermittent access day 15 total infusions1.01.21.6-1.31.0-0.9
Intermittent access terminal intake (last 3 days)0.80.91.2-1.11.1-0.7
Intermittent access total infusions0.40.40.5-0.70.6-0.6
Intermittent access day 1 locomotion0.10.10.2-0.5-0.2-0.4
Intermittent access day 15 total locomotion0.30.41.0-1.00.3-0.1
Intermittent access total locomotion0.20.30.7-0.8-0.0-0.2
Intermittent access standard deviation0.80.81.7-0.2-1.30.9
Left kidney weight2.67.39.73.1-2.72.2
Right kidney weight2.26.18.22.9-2.61.8
Cocaine induced anxiety5.15.87.72.3-2.12.8
Post-drug Anxiety2.42.73.51.3-1.71.9
Baseline Anxiety0.90.91.5-1.20.1-1.1
Tail length2.88.512.4-2.83.5-2.2
Length with tail0.20.91.41.2-0.51.0
Length without tail8.418.421.34.5-4.63.6
Times rat made contact with spout0.50.51.5-0.21.2-0.1
Lifetime Intake0.20.20.3-0.50.4-0.6
Liver weight, left1.21.93.01.3-1.71.0
Liver weight, right0.30.50.91.0-0.50.4
Locomotor activity0.10.10.1-0.2-0.3-0.3
Locomotor testing distance0.10.20.4-0.40.1-0.7
Locomotor testing rearing1.52.33.4-1.81.3-1.3
Locomotion in novel chamber0.10.20.50.70.10.1
Locomotion in novel chamber post-restriction0.50.61.80.01.4-0.2
Fecal boli incidents, locomotor time 10.40.41.0-0.50.1-1.0
Change in fecal boli incidents, locomotor task0.30.30.30.6-0.50.6
Time >=10cm from walls, locomotor time 12.42.53.3-1.81.7-1.0
Bouts of movement, locomotor time 10.30.30.60.6-0.80.2
Total resting periods, locomotor time 10.30.40.70.6-0.80.3
Rest time, locomotor task time 10.00.00.1-0.0-0.30.0
Distance moved, locomotor task time 10.30.30.5-0.70.6-0.3
Vertical activity count, locomotor time 10.60.60.9-0.90.8-0.5
Time >=10cm from walls, locomotor time 20.60.71.11.1-0.60.7
Bouts of movement, locomotor time 20.10.10.20.4-0.2-0.3
Total resting periods, locomotor time 20.20.20.50.00.2-0.7
Rest time, locomotor task time 21.01.21.7-1.01.3-1.0
Distance moved, locomotor task time 20.80.91.40.9-1.20.7
Vertical activity count, locomotor time 20.20.30.70.2-0.8-0.1
Light reinforcement 10.61.12.50.11.6-0.8
Light reinforcement 20.10.10.20.30.4-0.2
Bone: marrow area1.22.62.8-1.61.7-1.6
Bone: maximum diameter1.01.82.21.5-1.01.5
Bone: maximum force5.910.213.43.7-3.02.8
Bone: maximum moment6.310.914.83.8-2.93.1
Mean time between licks in bursts0.20.30.6-0.8-0.2-0.5
Mean num. licks in bursts0.10.10.20.30.30.5
Cd content in liver0.10.10.20.2-0.5-0.1
Co content in liver0.30.30.4-0.70.5-0.5
Cu content in liver0.50.71.30.6-0.61.1
Fe content in liver1.31.52.3-1.51.1-1.0
K content in liver2.52.42.9-1.71.6-1.4
Mg content in liver5.45.57.1-2.72.0-2.3
Mn content in liver0.20.20.50.2-0.70.3
Na content in liver0.10.10.3-0.60.0-0.2
Rb content in liver0.20.20.4-0.60.3-0.4
Se content in liver1.01.21.9-1.41.0-0.8
Sr content in liver1.71.52.41.2-0.91.6
Zn content in liver0.20.20.3-0.60.4-0.4
Bone: minimum diameter1.22.33.31.7-0.71.8
Time in familiar zone, hab. session 10.80.70.90.9-1.00.7
Time in novel zone, hab. session 10.20.20.3-0.30.5-0.3
Total zone transitions, hab. session 10.00.10.10.1-0.3-0.2
Total locomotion distance, hab. session 10.10.10.3-0.0-0.0-0.5
Locomotion velocity, hab. session 10.10.20.5-0.30.2-0.7
Time in familiar zone, hab. session 20.40.50.7-0.40.8-0.7
Time in novel zone, hab. session 20.60.61.10.5-1.10.6
Total zone transitions, hab. session 20.50.61.2-0.40.7-1.1
Total locomotion distance, hab. session 21.11.42.2-0.61.3-1.5
Locomotion velocity, hab. session 20.81.11.7-0.51.2-1.3
Novel to familiar place preference ratio2.93.03.71.9-1.31.9
Novelty place preference3.23.34.22.1-1.32.0
Time in novel zone, NPP test2.62.63.51.9-1.11.8
Total zone transitions, NPP test2.23.13.9-1.71.6-2.0
Total locomotion distance, NPP test2.73.75.3-1.71.7-2.3
Locomotion velocity, NPP test1.82.53.6-1.31.5-1.9
Intraocular pressure0.91.32.3-1.01.5-0.8
Delta distance traveled before/after self-admin4.64.95.3-2.32.2-2.2
Delta ambulatory time before/after self-admin5.35.86.1-2.42.4-2.5
Parametrial fat weight0.10.30.30.50.4-0.6
Pavlov. Cond. lever latency1.01.21.7-1.30.6-1.3
Pavlov. Cond. magazine entry latency1.01.22.51.1-0.41.6
Pavlov. Cond. change in total contacts1.11.21.41.1-1.01.2
Pavlov. Cond. index score0.60.81.41.00.11.2
Pavlov. Cond. latency score0.70.81.41.0-0.11.2
Pavlov. Cond. lever contacts0.10.10.20.50.20.5
Pavlov. Cond. magazine entry number1.62.03.6-1.40.7-1.9
Pavlov. Cond. intertrial magazine entries0.60.71.1-0.60.8-1.0
Pavlov. Cond. lever-magazine prob. diff.0.91.11.91.1-0.11.4
Pavlov. Cond. response bias1.21.52.51.3-0.61.6
Pavlov. Cond. lever latency0.81.11.50.9-1.21.1
Pavlov. Cond. magazine entry latency2.63.14.2-1.91.1-2.1
Pavlov. Cond. change in total contacts0.70.91.2-1.10.7-1.0
Pavlov. Cond. index score1.62.02.6-1.61.0-1.6
Pavlov. Cond. latency score1.72.12.8-1.51.0-1.7
Pavlov. Cond. lever contacts1.41.92.5-1.21.6-1.3
Pavlov. Cond. magazine entry number2.73.44.72.1-1.02.2
Pavlov. Cond. intertrial magazine entries0.20.20.50.40.00.7
Pavlov. Cond. lever-magazine prob. diff.1.82.22.9-1.71.0-1.7
Pavlov. Cond. response bias1.21.62.0-1.31.1-1.4
Time in closed arm before self-admin0.60.71.20.3-1.10.9
Time in closed arm after self-admin1.21.31.90.9-1.41.1
Time in open arm before self-admin0.60.72.01.40.3-0.1
Time in open arm after self-admin0.00.00.00.20.1-0.2
Bone: periosteal estimation0.81.62.31.5-0.91.3
Bone: periosteal perimeter3.66.07.32.7-1.82.7
Bone: post-yield work0.00.00.0-0.1-0.0-0.2
Progressive ratio test 1 active lever presses0.91.01.3-1.11.2-0.6
Progressive ratio test 1 breakpoint0.90.91.6-1.01.3-0.6
Progressive ratio test 1 inactive lever presses0.10.10.2-0.40.4-0.0
Progressive ratio test 2 active lever presses0.40.40.5-0.70.6-0.5
Progressive ratio test 2 breakpoint0.60.70.8-0.90.9-0.8
Progressive ratio test 2 inactive lever presses0.10.10.20.0-0.30.4
Incentive Sensitization - Responses0.30.30.4-0.40.6-0.6
Incentive Sensitization - Breakpoint0.20.20.3-0.30.6-0.4
Sum of active levers in priming session hrs 5-60.40.40.80.5-0.90.5
Progressive ratio0.10.10.3-0.0-0.5-0.3
Food seeking constrained by brief footshock0.00.00.1-0.1-0.10.3
Seeking ratio, punishment vs. effort0.10.20.4-0.40.60.1
Retroperitoneal fat weight0.51.63.3-0.91.8-0.9
Reaction time number correct2.63.74.1-1.91.9-2.0
Reaction time mean minus median0.00.00.1-0.30.20.0
Reaction time mean minus median AUC0.00.00.0-0.20.1-0.0
Reaction time num false alarms0.10.10.20.20.4-0.0
Reaction time num false alarms AUC0.10.10.3-0.10.6-0.4
Reaction time trials correct on left2.63.74.1-1.91.9-2.0
Reaction time trials on left2.84.04.3-2.02.0-2.1
Reaction time mean0.10.10.2-0.30.5-0.2
Reaction time mean AUC0.40.50.5-0.70.7-0.6
Median of all reaction times0.00.00.1-0.10.3-0.2
Reaction time omissions1.42.02.6-1.61.5-1.1
Reaction time false alarm rate0.30.50.70.9-0.50.7
Reaction time premature initiation rate0.00.10.1-0.10.3-0.3
Reaction time premature initiations1.31.82.1-1.21.3-1.5
Std. dev. reaction times0.40.60.9-0.90.6-0.6
Reaction time trials completed2.84.04.3-2.02.0-2.1
Reaction time trials AUC2.63.73.9-1.91.9-2.0
Run reversals in cocaine runway, females0.70.70.9-0.80.8-0.9
Run reversals in cocaine runway, males0.20.20.40.1-0.30.7
Latency to leave start box in cocaine runway1.01.11.8-1.00.7-1.4
Latency to leave start box in cocaine runway, F2.02.23.0-1.51.1-1.7
Latency to leave start box in cocaine runway, M0.10.10.20.20.2-0.4
Std. dev. time between licks in bursts2.42.93.8-1.91.5-1.6
Total sessions with >9 infusions0.10.10.1-0.2-0.2-0.4
Short access day 1 total inactive lever presses0.50.51.3-0.30.5-1.1
Short access day 10 total inactive lever presses0.30.40.60.6-0.30.8
Short access day 1 total infusions0.30.30.60.6-0.80.2
Short access day 10 total infusions0.20.20.3-0.50.4-0.2
Short access total infusions0.00.00.00.00.1-0.2
Short access day 1 locomotion1.31.41.71.2-1.31.1
Short access day 10 total locomotion0.80.91.40.6-1.21.0
Short access total locomotion0.90.91.30.8-1.10.9
One hour access (0.3 mA shock)0.60.70.8-0.90.7-0.9
Compulsive drug intake0.10.10.10.4-0.30.1
One hour access (shock baseline)1.01.11.3-0.91.1-1.1
Social response proportion0.10.10.30.1-0.60.1
Social responses0.30.40.80.9-0.40.4
Social time0.50.60.91.0-0.90.4
Soleus weight0.20.51.30.31.20.1
Bone: stiffness3.25.17.42.4-2.71.5
Tibialis anterior weight0.31.22.0-0.51.4-1.1
Time to tail flick, vehicle, before self-admin0.50.51.1-1.10.6-0.3
Time to tail flick, vehicle, after self-admin0.50.61.10.8-1.0-0.0
Time to tail flick, test, before self-admin1.51.53.2-1.80.7-0.8
Time to tail flick, test, after self-admin0.30.30.8-0.9-0.4-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.90.50.2-0.9
Delta time to tail flick, test, before/after SA3.63.34.12.0-1.91.4
Tibia length7.721.828.55.3-3.55.0
Ambulatory time before self-admin1.21.22.60.5-0.91.6
Ambulatory time after self-admin1.61.72.2-1.51.5-0.9
Bone: tissue strength0.10.10.10.40.20.3
Total heroin consumption4.45.28.11.8-2.82.0
Bone: trabecular number0.00.10.2-0.00.4-0.1
Bone: trabecular spacing2.22.83.5-1.81.3-1.9
Bone: trabecular thickness3.03.54.52.1-1.52.0
Bone: trabecular tissue density0.20.30.4-0.6-0.5-0.5
Water consumed over 24 hours0.20.30.50.70.10.6
Number of responses in last shaping day0.50.50.60.8-0.70.7