Rab40b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IC gene expression Rab40b 0.2 0.1 5.5e-03 -0.01 0.01 -0 -0 7.4e-01 1.4e-01 4.9e-01 4.9e-01
2 Liver gene expression Rab40b 0.19 0.07 1.2e-13 0.12 0.11 0.12 0.12 1.9e-13 2.0e-12 3.2e-13 6.1e-13
3 OFC gene expression Rab40b 0.27 0.13 2.9e-03 0.01 0.04 0.02 0.03 1.8e-01 3.2e-02 9.2e-02 8.1e-02
4 Brain mRNA stability Rab40b 0.1 0.05 5.8e-07 0.04 0.07 0.07 0.06 1.2e-04 5.0e-07 9.9e-07 2.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.2-0.1-0.40.3-0.2
Area under the delay curve0.30.40.91.00.30.5-0.4
BMI with tail0.82.95.9-2.41.6-1.31.2
BMI without tail0.20.51.3-1.1-0.80.2-0.4
Body weight1.25.313.2-3.61.6-1.91.4
Weight adjusted by age1.11.74.5-2.10.5-1.11.0
Bone surface0.20.30.7-0.5-0.80.2-0.4
Bone volume0.10.20.5-0.3-0.70.3-0.4
Breakpoint value in progressive ratio session1.41.62.6-1.61.3-1.30.8
Number of licking bursts0.40.60.80.8-0.90.8-0.7
Context. condit. distance diff. score2.63.14.71.2-2.21.7-1.8
Locomotion velocity, session 11.81.93.2-0.51.8-1.41.5
Locomotion distance, session 10.20.30.40.50.60.6-0.5
Locomotion velocity, session 20.30.40.90.70.90.10.0
Locomotion distance, session 20.20.20.40.30.30.6-0.5
Locomotion velocity, session 30.50.61.60.11.3-0.50.8
Locomotion distance, session 30.40.41.30.71.10.10.1
Stereotopy head waving bouts, day 30.91.01.7-0.91.3-0.90.9
Stereotopy head waving duration, day 30.40.51.0-0.71.0-0.50.5
Locomotion velocity, session 70.70.70.90.9-0.90.8-0.8
Locomotion distance, session 72.83.66.12.5-1.12.0-1.8
Stereotopy head waving bouts, day 70.50.51.6-1.30.5-0.50.2
Stereotopy head waving duration, day 70.30.41.2-1.10.3-0.40.3
Locomotion velocity, session 80.20.20.40.4-0.10.7-0.3
Locomotion distance, session 82.63.75.11.3-1.82.3-2.2
Degree of sensitization distance1.81.93.41.1-1.81.2-1.2
Degree of sensitization stereotypy0.20.20.7-0.90.1-0.2-0.0
Conditioned locomotion0.70.82.1-0.2-1.50.6-0.7
Cocaine response after cond. corrected0.60.71.4-0.21.2-0.80.8
Cocaine response after cond. not corrected0.30.41.10.21.1-0.40.4
Cocaine response before conditioning1.01.21.61.1-0.81.2-1.3
Saline control response0.50.72.00.7-1.40.5-0.3
Bone: connectivity density0.61.01.50.8-1.21.1-0.9
Bone: cortical apparent density0.40.62.01.40.50.30.0
Bone: cortical area8.312.724.6-5.03.0-3.02.9
Bone: cortical porosity4.14.46.0-2.41.9-2.21.8
Bone: cortical porosity3.43.75.3-2.31.6-2.01.7
Bone: cortical thickness12.921.529.1-5.44.6-4.24.3
Bone: cortical thickness5.36.27.5-2.62.7-2.32.4
Bone: cortical tissue density0.50.72.61.60.40.4-0.0
Condit. Reinf. active minus inactive responses0.30.41.1-1.0-0.0-0.50.5
Condit. Reinf. active-inactive response ratio0.70.71.4-1.20.6-0.70.8
Condit. Reinf. active responses0.20.30.7-0.8-0.5-0.20.1
Condit. Reinf. inactive responses0.30.41.10.3-1.00.4-0.5
Incentive salience index mean0.10.10.4-0.6-0.4-0.0-0.0
Condit. Reinf. lever presses0.71.01.30.9-0.91.0-1.1
Condit. Reinf. active minus inactive responses1.01.32.8-1.70.9-0.90.9
Condit. Reinf. active-inactive response ratio2.73.15.6-2.41.3-1.61.6
Condit. Reinf. active responses0.20.30.8-0.90.4-0.20.3
Condit. Reinf. inactive responses0.20.30.40.7-0.20.7-0.5
Condit. Reinf. lever presses0.20.30.40.4-0.40.7-0.6
Condit. Reinf. lever reinforcers received0.10.10.5-0.70.10.0-0.0
Conditioned reinforcement - actives0.40.61.21.1-0.10.8-0.8
Conditioned reinforcement - inactives0.00.00.10.30.10.1-0.2
Conditioned locomotion0.40.50.80.50.00.9-0.9
Patch foraging indifference point 0 sec0.10.20.50.4-0.70.2-0.1
Patch foraging indifference point AUC0.20.30.50.7-0.70.5-0.5
Delay disc. indifference point, 0s delay0.30.30.6-0.40.8-0.30.5
Delay disc. indifference point, 16s delay2.02.23.01.7-0.71.7-1.6
Delay disc. indifference point, 2s delay0.00.00.1-0.10.4-0.10.1
Delay disc. indifference point, 24s delay0.40.51.50.41.2-0.30.4
Delay disc. indifference point, 4s delay0.20.20.40.50.6-0.10.5
Delay disc. indifference point, 8s delay0.30.40.60.10.8-0.60.7
Indifference point function ln k0.00.10.20.00.50.00.2
Indifference point function log k0.00.10.20.00.50.00.2
Patch foraging total patch changes 0 sec0.10.20.40.4-0.60.3-0.1
Patch foraging total patch changes 12 sec0.10.10.30.4-0.5-0.0-0.1
Patch foraging total patch changes 18 sec0.40.70.80.8-0.90.9-0.7
Patch foraging total patch changes 24 sec0.00.00.1-0.1-0.3-0.10.2
Patch foraging total patch changes 6 sec0.00.00.1-0.0-0.2-0.20.2
Patch foraging time to switch 0 sec0.10.10.20.3-0.20.3-0.5
Patch foraging water rate 0 sec0.00.10.10.3-0.40.10.0
Patch foraging water rate 12 sec0.00.10.3-0.00.6-0.00.3
Patch foraging water rate 18 sec0.00.10.1-0.20.10.3-0.2
Patch foraging water rate 24 sec0.10.10.2-0.4-0.10.4-0.3
Patch foraging water rate 6 sec0.30.41.3-0.31.2-0.30.5
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.2-0.3-0.20.3
Distance traveled before self-admin0.50.70.8-0.90.7-0.80.9
Distance traveled after self-admin2.22.73.71.5-1.91.5-1.6
Extensor digitorum longus weight0.20.71.10.0-0.80.9-1.0
Bone: elastic displacement0.91.11.3-1.10.8-1.01.1
Bone: elastic work9.812.817.7-4.22.8-3.63.6
Bone: endosteal estimation0.92.03.40.1-1.71.4-1.8
Bone: endosteal perimeter0.30.61.4-1.2-1.0-0.1-0.2
Epididymis fat weight0.10.40.8-0.4-0.90.4-0.7
Delta time in closed arm before/after self-admin1.51.41.91.4-1.01.2-1.1
Delta time in open arm before/after self-admin0.10.10.30.5-0.10.10.0
Diff in mean of infusions in LGA sessions0.10.10.2-0.2-0.5-0.1-0.3
Delay discount exponential model param0.30.30.9-1.0-0.5-0.30.1
Extinction: sum of active levers before priming1.71.92.9-1.11.7-1.31.3
Active lever presses in extinction session 65.85.88.7-2.22.9-2.32.1
Bone: final force5.99.419.3-4.42.6-2.52.3
Bone: final moment7.011.322.9-4.82.7-2.82.6
Food consumed during 24 hour testing period0.20.30.80.4-0.90.3-0.3
Glucose7.311.519.9-2.14.5-3.33.3
Heart weight2.43.85.8-2.41.9-1.81.6
Delay discount hyperbolic model param0.20.30.8-0.9-0.6-0.20.0
Intermittent access intake day 1-15 change0.20.51.20.8-1.10.2-0.3
Intermittent access intake escalation0.20.51.10.8-1.10.2-0.1
Intermittent access intake escalation 20.20.20.4-0.2-0.3-0.60.5
Intermitt. access day 1 inactive lever presses0.41.41.90.9-1.41.1-1.2
Intermitt. access day 15 inactive lever presses0.50.91.20.6-1.11.1-1.0
Intermitt. access escalation Index1.11.62.31.4-1.51.1-0.9
Intermittent access day 1 total infusions0.10.20.6-0.30.8-0.1-0.0
Intermittent access day 15 total infusions0.10.10.20.4-0.40.2-0.2
Intermittent access terminal intake (last 3 days)0.10.10.20.4-0.50.2-0.3
Intermittent access total infusions0.10.10.20.5-0.20.3-0.3
Intermittent access day 1 locomotion0.10.20.40.50.60.3-0.2
Intermittent access day 15 total locomotion0.00.00.0-0.20.2-0.10.1
Intermittent access total locomotion0.00.00.10.30.20.1-0.1
Intermittent access standard deviation0.40.81.2-0.31.1-1.00.9
Left kidney weight0.94.47.8-2.82.1-1.81.5
Right kidney weight1.04.76.8-2.62.4-1.81.7
Cocaine induced anxiety5.67.98.8-2.53.0-2.92.9
Post-drug Anxiety5.45.87.5-1.82.7-2.52.5
Baseline Anxiety0.60.71.01.0-0.70.8-0.8
Tail length0.31.03.1-0.5-1.80.4-0.8
Length with tail0.72.95.6-2.41.1-1.71.3
Length without tail3.611.713.7-3.63.7-3.33.1
Times rat made contact with spout0.30.31.10.1-1.0-0.30.2
Lifetime Intake0.10.20.50.7-0.10.3-0.3
Liver weight, left0.20.41.4-0.01.2-0.2-0.0
Liver weight, right0.20.40.7-0.8-0.60.3-0.6
Locomotor activity0.10.10.20.40.20.3-0.5
Locomotor testing distance0.30.50.80.7-0.20.8-0.9
Locomotor testing rearing1.22.43.51.9-1.31.5-1.4
Locomotion in novel chamber0.00.00.0-0.2-0.20.2-0.2
Locomotion in novel chamber post-restriction0.50.83.0-0.5-1.70.0-0.3
Fecal boli incidents, locomotor time 10.40.51.00.4-0.50.8-1.0
Change in fecal boli incidents, locomotor task0.50.50.80.40.6-0.90.8
Time >=10cm from walls, locomotor time 11.92.03.91.1-2.01.4-1.1
Bouts of movement, locomotor time 10.30.30.9-0.11.0-0.30.4
Total resting periods, locomotor time 10.30.31.00.01.0-0.40.4
Rest time, locomotor task time 10.10.10.3-0.20.6-0.40.2
Distance moved, locomotor task time 10.20.30.70.8-0.40.4-0.3
Vertical activity count, locomotor time 10.10.30.40.4-0.60.6-0.5
Time >=10cm from walls, locomotor time 20.40.60.8-0.90.8-0.60.8
Bouts of movement, locomotor time 20.10.20.40.60.30.3-0.4
Total resting periods, locomotor time 20.30.50.70.7-0.20.7-0.8
Rest time, locomotor task time 20.60.81.60.4-1.30.6-1.0
Distance moved, locomotor task time 20.50.61.80.01.3-0.40.7
Vertical activity count, locomotor time 20.20.31.0-0.31.00.1-0.0
Light reinforcement 10.61.43.00.8-1.71.0-1.0
Light reinforcement 20.20.30.8-0.3-0.90.2-0.3
Bone: marrow area0.91.93.20.1-1.61.3-1.8
Bone: maximum diameter1.83.48.5-2.91.2-1.41.3
Bone: maximum force5.29.220.8-4.62.4-2.42.1
Bone: maximum moment6.311.124.3-4.92.5-2.72.5
Mean time between licks in bursts0.20.51.41.20.20.5-0.4
Mean num. licks in bursts0.20.30.5-0.60.0-0.70.6
Cd content in liver1.71.92.41.4-1.11.5-1.6
Co content in liver0.10.20.40.2-0.70.3-0.3
Cu content in liver0.40.40.8-0.50.1-0.80.9
Fe content in liver0.70.91.40.8-0.61.0-1.2
K content in liver4.03.85.12.0-2.31.9-1.7
Mg content in liver7.17.38.42.9-2.72.7-2.5
Mn content in liver0.10.10.20.40.50.00.2
Na content in liver1.21.31.91.4-1.01.1-1.0
Rb content in liver0.50.61.20.3-1.10.9-0.7
Se content in liver0.81.01.51.2-1.10.8-0.7
Sr content in liver1.61.42.0-0.71.2-1.31.4
Zn content in liver1.01.12.60.4-1.60.8-1.0
Bone: minimum diameter1.73.17.8-2.80.6-1.51.4
Time in familiar zone, hab. session 10.60.60.8-0.50.9-0.80.8
Time in novel zone, hab. session 10.30.30.40.7-0.50.5-0.3
Total zone transitions, hab. session 10.10.20.60.20.80.1-0.0
Total locomotion distance, hab. session 10.10.10.1-0.20.40.3-0.3
Locomotion velocity, hab. session 10.10.10.2-0.20.20.4-0.5
Time in familiar zone, hab. session 20.20.30.50.7-0.30.4-0.5
Time in novel zone, hab. session 20.20.20.4-0.40.6-0.30.4
Total zone transitions, hab. session 20.81.01.60.8-0.71.3-1.2
Total locomotion distance, hab. session 20.91.21.80.6-1.01.3-1.3
Locomotion velocity, hab. session 20.71.01.40.4-1.01.2-1.2
Novel to familiar place preference ratio2.83.04.0-2.01.2-1.91.8
Novelty place preference3.13.44.4-2.11.2-1.91.9
Time in novel zone, NPP test2.42.63.4-1.81.1-1.71.7
Total zone transitions, NPP test2.13.04.21.5-1.32.1-2.0
Total locomotion distance, NPP test2.43.34.61.4-1.42.1-2.1
Locomotion velocity, NPP test1.52.13.01.0-1.21.7-1.7
Intraocular pressure0.50.71.4-0.3-1.20.7-0.9
Delta distance traveled before/after self-admin2.72.93.61.9-1.81.5-1.6
Delta ambulatory time before/after self-admin3.94.86.22.5-2.22.0-2.0
Parametrial fat weight0.30.60.90.6-0.90.7-1.0
Pavlov. Cond. lever latency1.62.02.91.2-1.11.7-1.6
Pavlov. Cond. magazine entry latency2.02.63.5-1.61.1-1.91.8
Pavlov. Cond. change in total contacts1.92.02.4-1.01.5-1.61.5
Pavlov. Cond. index score1.51.92.5-1.50.7-1.61.5
Pavlov. Cond. latency score1.62.02.8-1.50.7-1.71.6
Pavlov. Cond. lever contacts0.40.50.8-0.70.5-0.90.8
Pavlov. Cond. magazine entry number3.44.35.62.0-1.62.4-2.3
Pavlov. Cond. intertrial magazine entries0.70.91.10.6-1.11.0-1.1
Pavlov. Cond. lever-magazine prob. diff.1.62.02.6-1.50.8-1.61.6
Pavlov. Cond. response bias2.63.24.2-1.71.4-2.01.9
Pavlov. Cond. lever latency0.71.01.8-0.21.3-1.01.1
Pavlov. Cond. magazine entry latency2.42.93.91.9-0.81.9-2.0
Pavlov. Cond. change in total contacts0.40.71.00.4-0.81.0-1.0
Pavlov. Cond. index score0.81.11.90.8-0.71.2-1.4
Pavlov. Cond. latency score1.11.52.30.9-0.91.4-1.5
Pavlov. Cond. lever contacts0.81.11.90.3-1.41.1-1.2
Pavlov. Cond. magazine entry number2.02.53.4-1.90.8-1.71.8
Pavlov. Cond. intertrial magazine entries0.10.20.7-0.8-0.1-0.20.3
Pavlov. Cond. lever-magazine prob. diff.0.91.32.01.0-0.71.3-1.4
Pavlov. Cond. response bias0.60.91.30.6-0.91.0-1.2
Time in closed arm before self-admin1.21.52.1-1.01.5-1.21.3
Time in closed arm after self-admin0.20.20.30.40.6-0.40.4
Time in open arm before self-admin0.40.50.80.1-0.90.7-0.7
Time in open arm after self-admin0.10.10.1-0.0-0.10.4-0.3
Bone: periosteal estimation1.43.09.6-3.10.8-1.10.8
Bone: periosteal perimeter5.39.117.5-4.22.0-2.92.6
Bone: post-yield work0.10.10.3-0.50.10.0-0.1
Progressive ratio test 1 active lever presses0.30.30.70.8-0.50.5-0.5
Progressive ratio test 1 breakpoint0.30.30.60.8-0.50.4-0.5
Progressive ratio test 1 inactive lever presses0.81.11.70.8-1.31.0-1.0
Progressive ratio test 2 active lever presses0.20.30.40.4-0.50.5-0.6
Progressive ratio test 2 breakpoint0.20.20.40.4-0.40.5-0.6
Progressive ratio test 2 inactive lever presses0.10.10.1-0.30.4-0.40.2
Incentive Sensitization - Responses0.20.30.50.3-0.60.6-0.7
Incentive Sensitization - Breakpoint0.20.20.40.2-0.50.5-0.6
Sum of active levers in priming session hrs 5-61.31.21.6-0.91.3-1.20.9
Progressive ratio0.20.30.5-0.70.7-0.0-0.2
Food seeking constrained by brief footshock0.20.20.30.00.3-0.50.6
Seeking ratio, punishment vs. effort0.10.20.40.7-0.50.20.1
Retroperitoneal fat weight0.41.73.6-0.6-1.91.0-1.4
Reaction time number correct2.54.86.31.9-2.12.5-2.3
Reaction time mean minus median0.00.00.10.0-0.2-0.30.1
Reaction time mean minus median AUC0.00.00.1-0.1-0.2-0.10.0
Reaction time num false alarms0.00.00.2-0.4-0.1-0.1-0.1
Reaction time num false alarms AUC0.10.10.20.0-0.30.3-0.4
Reaction time trials correct on left2.54.86.31.9-2.12.5-2.3
Reaction time trials on left2.75.06.61.9-2.12.6-2.3
Reaction time mean0.10.10.2-0.4-0.4-0.1-0.1
Reaction time mean AUC0.10.20.5-0.1-0.70.4-0.5
Median of all reaction times0.00.10.2-0.4-0.30.0-0.1
Reaction time omissions0.30.51.00.5-1.00.6-0.6
Reaction time false alarm rate0.50.71.0-0.90.7-1.00.8
Reaction time premature initiation rate0.20.20.70.9-0.10.3-0.3
Reaction time premature initiations1.52.73.11.8-1.31.7-1.7
Std. dev. reaction times0.10.20.40.3-0.60.3-0.5
Reaction time trials completed2.75.06.61.9-2.12.6-2.3
Reaction time trials AUC2.54.76.21.8-2.12.5-2.2
Run reversals in cocaine runway, females0.50.50.70.6-0.40.8-0.8
Run reversals in cocaine runway, males0.50.50.8-0.90.1-0.90.7
Latency to leave start box in cocaine runway0.70.81.50.7-0.51.0-1.2
Latency to leave start box in cocaine runway, F2.22.53.91.1-1.21.8-2.0
Latency to leave start box in cocaine runway, M0.10.10.2-0.10.5-0.50.3
Std. dev. time between licks in bursts2.33.14.11.5-1.62.0-1.8
Total sessions with >9 infusions0.10.10.20.40.10.2-0.2
Short access day 1 total inactive lever presses0.20.30.50.30.30.6-0.7
Short access day 10 total inactive lever presses0.10.20.4-0.1-0.60.4-0.4
Short access day 1 total infusions0.20.20.50.70.70.10.1
Short access day 10 total infusions0.10.20.30.4-0.50.1-0.3
Short access total infusions0.20.20.70.90.00.2-0.1
Short access day 1 locomotion0.70.91.7-0.41.3-0.91.0
Short access day 10 total locomotion0.51.01.8-0.21.3-1.01.0
Short access total locomotion0.70.81.3-0.21.1-1.01.0
One hour access (0.3 mA shock)0.30.30.50.6-0.30.6-0.7
Compulsive drug intake0.60.70.90.6-0.80.9-0.9
One hour access (shock baseline)0.20.30.40.6-0.50.5-0.6
Social response proportion0.10.10.10.4-0.20.4-0.3
Social responses0.00.00.10.4-0.10.20.0
Social time0.20.20.5-0.50.7-0.20.3
Soleus weight0.10.20.5-0.5-0.7-0.30.3
Bone: stiffness2.13.36.7-2.62.1-1.21.0
Tibialis anterior weight0.10.30.50.3-0.70.5-0.6
Time to tail flick, vehicle, before self-admin0.10.10.20.5-0.20.4-0.2
Time to tail flick, vehicle, after self-admin0.10.20.50.30.70.2-0.2
Time to tail flick, test, before self-admin0.70.71.81.4-0.50.7-0.6
Time to tail flick, test, after self-admin0.30.30.80.90.6-0.10.2
Delta time to tail flick, vehicle, before/after SA0.40.40.70.6-0.40.6-0.8
Delta time to tail flick, test, before/after SA2.02.12.8-1.31.7-1.41.3
Tibia length8.824.247.7-6.93.2-4.54.3
Ambulatory time before self-admin0.91.31.6-1.30.8-1.11.2
Ambulatory time after self-admin0.60.71.30.7-1.10.7-0.8
Bone: tissue strength0.70.72.6-1.60.4-0.30.2
Total heroin consumption3.23.75.1-2.32.1-1.71.5
Bone: trabecular number0.00.00.10.2-0.2-0.00.1
Bone: trabecular spacing2.22.94.11.1-1.52.0-2.0
Bone: trabecular thickness2.22.83.7-1.71.0-1.91.9
Bone: trabecular tissue density0.10.20.30.50.20.5-0.5
Water consumed over 24 hours0.20.30.5-0.20.1-0.70.7
Number of responses in last shaping day0.30.31.10.21.0-0.30.4