Pus3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Pus3 0.44 0.14 3.1e-09 0.01 0.06 0.06 0.04 5.5e-02 1.8e-07 1.6e-07 2.2e-05
2 LHb mRNA stability Pus3 0.16 0.12 1.5e-03 0.04 0.04 0.07 0.06 3.2e-02 3.1e-02 9.2e-03 1.4e-02
3 Adipose alternative TSS XM_063265424.1 0.24 0.15 4.4e-03 0.01 0.02 0.02 0.01 1.2e-02 4.6e-03 1.4e-03 2.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.3-0.2-0.30.6
Area under the delay curve0.10.10.2-0.4-0.3-0.0
BMI with tail0.20.92.2-0.10.6-1.5
BMI without tail0.82.54.40.81.6-2.1
Body weight0.62.84.60.71.8-2.1
Weight adjusted by age0.10.20.4-0.20.6-0.2
Bone surface0.20.30.50.7-0.00.7
Bone volume0.10.20.40.2-0.20.6
Breakpoint value in progressive ratio session2.12.64.0-1.5-2.01.3
Number of licking bursts0.20.30.4-0.4-0.60.4
Context. condit. distance diff. score0.20.20.2-0.5-0.50.3
Locomotion velocity, session 10.30.40.50.50.7-0.6
Locomotion distance, session 10.20.30.50.10.7-0.6
Locomotion velocity, session 21.21.42.40.41.3-1.6
Locomotion distance, session 20.60.81.90.10.8-1.4
Locomotion velocity, session 30.10.20.50.70.2-0.0
Locomotion distance, session 31.31.52.61.21.6-0.6
Stereotopy head waving bouts, day 32.02.34.5-0.7-2.11.4
Stereotopy head waving duration, day 30.81.02.5-0.4-1.60.6
Locomotion velocity, session 71.01.11.2-1.0-1.11.0
Locomotion distance, session 70.00.00.10.30.00.0
Stereotopy head waving bouts, day 70.50.51.21.1-0.30.5
Stereotopy head waving duration, day 70.50.61.71.3-0.20.4
Locomotion velocity, session 80.10.10.20.20.5-0.2
Locomotion distance, session 80.20.30.40.10.6-0.6
Degree of sensitization distance0.20.20.5-0.3-0.70.2
Degree of sensitization stereotypy0.70.71.91.40.50.1
Conditioned locomotion1.11.32.80.71.7-0.7
Cocaine response after cond. corrected0.20.20.4-0.6-0.50.1
Cocaine response after cond. not corrected1.01.21.9-1.1-1.40.6
Cocaine response before conditioning2.02.33.5-1.0-1.91.5
Saline control response0.50.60.9-0.40.9-0.9
Bone: connectivity density0.00.00.00.10.20.1
Bone: cortical apparent density1.31.83.11.81.5-0.1
Bone: cortical area1.11.73.01.70.51.4
Bone: cortical porosity0.60.61.01.0-0.20.9
Bone: cortical porosity0.60.61.20.7-0.51.1
Bone: cortical thickness0.71.11.71.30.31.2
Bone: cortical thickness0.50.61.60.4-0.11.3
Bone: cortical tissue density1.21.62.71.61.5-0.1
Condit. Reinf. active minus inactive responses1.01.22.7-1.6-0.80.3
Condit. Reinf. active-inactive response ratio0.40.40.9-1.0-0.5-0.0
Condit. Reinf. active responses0.81.02.5-1.6-0.70.3
Condit. Reinf. inactive responses0.10.10.3-0.50.3-0.0
Incentive salience index mean0.70.92.1-1.4-0.60.3
Condit. Reinf. lever presses0.10.10.3-0.60.00.1
Condit. Reinf. active minus inactive responses1.21.62.1-1.3-1.50.9
Condit. Reinf. active-inactive response ratio1.41.62.5-1.1-1.61.1
Condit. Reinf. active responses0.60.81.4-1.2-1.00.2
Condit. Reinf. inactive responses0.60.81.70.00.9-1.3
Condit. Reinf. lever presses0.30.40.4-0.6-0.60.6
Condit. Reinf. lever reinforcers received0.50.71.1-1.0-0.90.3
Conditioned reinforcement - actives0.30.51.4-0.20.2-1.2
Conditioned reinforcement - inactives1.62.46.02.40.21.1
Conditioned locomotion0.91.12.0-1.4-1.20.3
Patch foraging indifference point 0 sec1.62.95.12.31.9-0.1
Patch foraging indifference point AUC0.50.71.01.00.90.4
Delay disc. indifference point, 0s delay0.80.91.30.51.2-1.1
Delay disc. indifference point, 16s delay1.31.42.1-1.4-1.50.4
Delay disc. indifference point, 2s delay0.20.20.60.0-0.10.8
Delay disc. indifference point, 24s delay0.60.71.1-1.0-1.0-0.1
Delay disc. indifference point, 4s delay0.60.61.30.61.1-0.4
Delay disc. indifference point, 8s delay0.20.30.50.70.4-0.3
Indifference point function ln k0.50.92.21.50.80.0
Indifference point function log k0.50.92.21.50.80.0
Patch foraging total patch changes 0 sec1.62.95.12.31.9-0.1
Patch foraging total patch changes 12 sec0.81.01.51.11.20.6
Patch foraging total patch changes 18 sec0.50.71.90.60.21.4
Patch foraging total patch changes 24 sec0.20.40.50.60.7-0.6
Patch foraging total patch changes 6 sec1.92.94.81.92.2-0.3
Patch foraging time to switch 0 sec1.53.14.5-2.0-2.10.8
Patch foraging water rate 0 sec0.71.52.51.21.6-0.8
Patch foraging water rate 12 sec1.42.96.60.01.4-2.6
Patch foraging water rate 18 sec0.10.10.4-0.20.2-0.6
Patch foraging water rate 24 sec0.60.91.21.11.1-0.6
Patch foraging water rate 6 sec0.91.42.70.21.2-1.7
Seeking ratio, delayed vs. immediate footshock0.10.20.3-0.6-0.40.2
Distance traveled before self-admin1.41.93.4-1.30.7-1.8
Distance traveled after self-admin3.13.89.2-0.81.2-3.0
Extensor digitorum longus weight1.35.38.2-2.9-2.51.3
Bone: elastic displacement0.20.20.3-0.40.2-0.5
Bone: elastic work0.81.12.40.5-0.81.5
Bone: endosteal estimation0.40.82.21.50.20.3
Bone: endosteal perimeter0.30.71.20.71.1-0.7
Epididymis fat weight1.13.65.11.72.2-1.7
Delta time in closed arm before/after self-admin3.02.86.02.41.50.4
Delta time in open arm before/after self-admin0.90.81.91.40.8-0.2
Diff in mean of infusions in LGA sessions0.30.30.6-0.8-0.6-0.1
Delay discount exponential model param0.20.20.30.50.5-0.3
Extinction: sum of active levers before priming3.43.88.42.90.61.6
Active lever presses in extinction session 63.73.75.8-2.4-2.01.2
Bone: final force1.11.83.81.90.31.3
Bone: final moment1.11.83.82.00.51.1
Food consumed during 24 hour testing period0.81.21.4-0.9-1.11.2
Glucose0.20.30.60.80.40.1
Heart weight0.60.92.4-0.10.6-1.5
Delay discount hyperbolic model param0.10.10.10.30.3-0.2
Intermittent access intake day 1-15 change5.010.323.34.82.80.2
Intermittent access intake escalation10.020.649.87.13.31.0
Intermittent access intake escalation 214.917.037.36.13.70.3
Intermitt. access day 1 inactive lever presses0.10.40.60.80.6-0.2
Intermitt. access day 15 inactive lever presses3.46.914.43.80.82.4
Intermitt. access escalation Index0.30.41.1-0.20.1-1.0
Intermittent access day 1 total infusions0.20.30.6-0.6-0.4-0.7
Intermittent access day 15 total infusions8.112.131.35.62.00.9
Intermittent access terminal intake (last 3 days)6.78.922.84.81.80.7
Intermittent access total infusions2.32.87.62.80.70.5
Intermittent access day 1 locomotion0.40.50.9-0.7-0.9-0.3
Intermittent access day 15 total locomotion0.00.10.2-0.2-0.5-0.0
Intermittent access total locomotion0.10.10.40.60.0-0.0
Intermittent access standard deviation1.02.14.72.21.3-0.2
Left kidney weight1.04.76.62.42.6-1.3
Right kidney weight1.25.36.82.62.6-1.6
Cocaine induced anxiety1.21.73.31.80.91.0
Post-drug Anxiety0.20.20.60.20.8-0.1
Baseline Anxiety0.80.91.7-1.3-0.1-1.1
Tail length0.20.81.30.81.2-0.7
Length with tail0.52.03.51.51.9-0.6
Length without tail0.20.71.2-0.01.1-0.9
Times rat made contact with spout0.20.20.3-0.4-0.50.5
Lifetime Intake2.73.39.03.00.70.7
Liver weight, left0.30.51.2-0.50.1-1.1
Liver weight, right0.81.42.4-1.6-1.4-0.3
Locomotor activity1.32.04.82.20.70.8
Locomotor testing distance1.32.45.22.30.41.4
Locomotor testing rearing0.61.22.11.50.01.2
Locomotion in novel chamber0.20.20.4-0.2-0.60.4
Locomotion in novel chamber post-restriction0.10.20.40.2-0.50.7
Fecal boli incidents, locomotor time 10.10.10.2-0.4-0.40.2
Change in fecal boli incidents, locomotor task0.10.10.4-0.1-0.10.6
Time >=10cm from walls, locomotor time 10.60.61.6-0.00.5-1.2
Bouts of movement, locomotor time 10.40.50.7-0.4-0.80.8
Total resting periods, locomotor time 10.20.30.7-0.2-0.30.8
Rest time, locomotor task time 10.40.51.4-0.11.2-0.1
Distance moved, locomotor task time 10.00.10.10.3-0.2-0.3
Vertical activity count, locomotor time 10.51.12.1-1.0-1.40.5
Time >=10cm from walls, locomotor time 21.21.72.01.31.4-1.2
Bouts of movement, locomotor time 20.71.12.90.4-0.51.7
Total resting periods, locomotor time 20.81.43.50.2-0.81.9
Rest time, locomotor task time 20.50.61.1-1.1-0.30.8
Distance moved, locomotor task time 21.11.42.31.51.0-0.9
Vertical activity count, locomotor time 20.30.40.91.00.4-0.3
Light reinforcement 10.51.31.41.11.2-1.0
Light reinforcement 20.30.40.60.50.7-0.8
Bone: marrow area0.30.72.01.40.10.5
Bone: maximum diameter0.20.41.10.3-0.31.0
Bone: maximum force1.52.63.91.9-0.32.0
Bone: maximum moment1.42.43.82.0-0.11.8
Mean time between licks in bursts0.00.00.00.10.20.0
Mean num. licks in bursts0.10.10.20.30.5-0.2
Cd content in liver1.21.32.20.41.3-1.5
Co content in liver0.80.91.51.2-0.70.9
Cu content in liver2.22.64.80.21.7-2.2
Fe content in liver1.11.32.7-1.6-1.1-0.1
K content in liver0.00.00.1-0.3-0.10.2
Mg content in liver0.20.20.3-0.50.4-0.5
Mn content in liver1.51.74.0-2.0-1.00.1
Na content in liver0.20.20.3-0.5-0.00.6
Rb content in liver0.10.20.3-0.40.50.0
Se content in liver0.10.10.3-0.00.6-0.2
Sr content in liver5.34.67.2-0.5-2.52.7
Zn content in liver0.10.10.30.10.6-0.0
Bone: minimum diameter1.01.73.71.91.20.1
Time in familiar zone, hab. session 10.40.40.60.40.7-0.8
Time in novel zone, hab. session 10.60.60.8-0.3-0.90.9
Total zone transitions, hab. session 10.10.20.4-0.6-0.20.2
Total locomotion distance, hab. session 10.10.10.1-0.40.3-0.1
Locomotion velocity, hab. session 10.20.30.7-0.10.8-0.4
Time in familiar zone, hab. session 20.00.00.00.20.00.2
Time in novel zone, hab. session 20.10.10.1-0.3-0.30.0
Total zone transitions, hab. session 20.60.81.50.30.9-1.2
Total locomotion distance, hab. session 20.20.30.5-0.70.2-0.6
Locomotion velocity, hab. session 20.20.30.5-0.50.4-0.7
Novel to familiar place preference ratio0.00.00.10.10.00.3
Novelty place preference0.00.00.10.1-0.00.3
Time in novel zone, NPP test0.10.10.3-0.1-0.30.5
Total zone transitions, NPP test0.60.91.30.61.0-1.1
Total locomotion distance, NPP test0.20.30.4-0.30.6-0.7
Locomotion velocity, NPP test0.50.71.00.11.0-1.0
Intraocular pressure0.20.30.7-0.9-0.40.0
Delta distance traveled before/after self-admin1.41.53.11.81.1-0.3
Delta ambulatory time before/after self-admin2.02.56.42.51.10.3
Parametrial fat weight0.51.22.41.61.10.3
Pavlov. Cond. lever latency0.70.91.31.20.7-0.9
Pavlov. Cond. magazine entry latency0.30.40.60.70.80.1
Pavlov. Cond. change in total contacts1.01.12.1-1.5-1.00.4
Pavlov. Cond. index score0.10.10.2-0.40.10.3
Pavlov. Cond. latency score0.20.20.4-0.7-0.10.4
Pavlov. Cond. lever contacts0.50.61.1-1.0-0.60.5
Pavlov. Cond. magazine entry number0.30.40.7-0.6-0.90.2
Pavlov. Cond. intertrial magazine entries2.22.73.7-1.9-1.81.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.1-0.20.10.4
Pavlov. Cond. response bias0.20.20.3-0.5-0.30.5
Pavlov. Cond. lever latency0.30.50.90.30.6-0.9
Pavlov. Cond. magazine entry latency0.30.40.50.60.7-0.5
Pavlov. Cond. change in total contacts0.10.10.20.2-0.10.5
Pavlov. Cond. index score0.10.10.3-0.0-0.30.5
Pavlov. Cond. latency score0.10.10.2-0.2-0.30.4
Pavlov. Cond. lever contacts0.10.10.20.1-0.10.5
Pavlov. Cond. magazine entry number0.10.10.10.10.4-0.2
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.5-0.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.1-0.40.6
Pavlov. Cond. response bias0.10.10.40.2-0.20.6
Time in closed arm before self-admin0.50.71.1-1.10.2-0.9
Time in closed arm after self-admin0.20.20.4-0.60.4-0.3
Time in open arm before self-admin0.30.30.5-0.5-0.70.4
Time in open arm after self-admin0.70.82.21.50.20.4
Bone: periosteal estimation0.91.94.22.10.31.2
Bone: periosteal perimeter0.30.61.11.00.40.7
Bone: post-yield work0.71.01.51.21.1-0.4
Progressive ratio test 1 active lever presses0.70.91.51.0-0.41.2
Progressive ratio test 1 breakpoint0.81.01.51.1-0.41.2
Progressive ratio test 1 inactive lever presses1.52.15.52.40.60.6
Progressive ratio test 2 active lever presses0.80.92.81.70.10.0
Progressive ratio test 2 breakpoint1.11.33.92.00.10.1
Progressive ratio test 2 inactive lever presses1.22.05.12.30.40.9
Incentive Sensitization - Responses1.52.25.62.41.0-0.2
Incentive Sensitization - Breakpoint1.82.36.32.50.8-0.0
Sum of active levers in priming session hrs 5-60.20.20.5-0.0-0.50.7
Progressive ratio0.20.30.40.20.6-0.6
Food seeking constrained by brief footshock1.31.63.00.71.1-1.7
Seeking ratio, punishment vs. effort0.30.40.80.50.5-0.9
Retroperitoneal fat weight0.93.85.41.92.3-1.6
Reaction time number correct0.61.12.31.50.9-0.6
Reaction time mean minus median1.22.94.7-2.2-2.00.0
Reaction time mean minus median AUC0.82.03.9-2.0-1.5-0.3
Reaction time num false alarms1.01.32.51.2-0.11.6
Reaction time num false alarms AUC1.52.34.12.00.41.7
Reaction time trials correct on left0.61.12.31.50.9-0.6
Reaction time trials on left0.61.12.31.50.9-0.6
Reaction time mean1.01.63.3-1.8-1.20.2
Reaction time mean AUC1.01.63.6-1.9-1.1-0.1
Median of all reaction times0.60.82.0-1.4-0.6-0.0
Reaction time omissions0.20.40.90.10.4-0.9
Reaction time false alarm rate0.91.23.00.8-0.31.7
Reaction time premature initiation rate0.20.20.7-0.80.1-0.2
Reaction time premature initiations0.10.20.3-0.10.4-0.5
Std. dev. reaction times1.62.94.2-2.0-2.00.9
Reaction time trials completed0.61.12.31.50.9-0.6
Reaction time trials AUC0.51.01.91.40.9-0.6
Run reversals in cocaine runway, females4.24.29.63.11.70.2
Run reversals in cocaine runway, males4.24.29.33.01.8-0.3
Latency to leave start box in cocaine runway0.60.71.7-1.3-0.50.2
Latency to leave start box in cocaine runway, F0.40.41.1-0.11.0-0.4
Latency to leave start box in cocaine runway, M3.53.24.9-2.2-2.10.6
Std. dev. time between licks in bursts0.00.00.00.0-0.00.0
Total sessions with >9 infusions0.10.10.10.1-0.3-0.4
Short access day 1 total inactive lever presses1.72.23.9-2.0-1.6-0.2
Short access day 10 total inactive lever presses0.20.50.90.6-0.60.9
Short access day 1 total infusions1.21.64.52.10.20.5
Short access day 10 total infusions0.20.30.80.9-0.1-0.4
Short access total infusions1.01.33.71.90.40.2
Short access day 1 locomotion2.73.45.8-2.4-2.1-0.2
Short access day 10 total locomotion3.25.913.1-3.6-1.0-1.9
Short access total locomotion2.53.06.0-2.4-1.3-1.1
One hour access (0.3 mA shock)7.58.722.34.71.31.4
Compulsive drug intake2.02.34.42.10.61.5
One hour access (shock baseline)2.03.08.32.90.60.7
Social response proportion0.00.00.1-0.1-0.2-0.3
Social responses0.00.00.10.0-0.3-0.2
Social time0.20.30.7-0.20.4-0.9
Soleus weight2.78.011.2-3.4-3.21.5
Bone: stiffness1.22.04.22.0-0.01.3
Tibialis anterior weight1.13.75.4-2.3-2.21.0
Time to tail flick, vehicle, before self-admin1.11.22.61.60.70.7
Time to tail flick, vehicle, after self-admin0.40.50.90.90.40.6
Time to tail flick, test, before self-admin1.61.63.21.0-0.91.8
Time to tail flick, test, after self-admin1.91.93.61.91.4-0.4
Delta time to tail flick, vehicle, before/after SA0.60.51.1-1.10.0-0.7
Delta time to tail flick, test, before/after SA2.32.44.20.41.7-2.0
Tibia length0.82.13.31.81.5-0.8
Ambulatory time before self-admin2.23.34.9-2.20.3-2.2
Ambulatory time after self-admin2.12.55.3-0.01.5-2.3
Bone: tissue strength0.50.51.11.10.5-0.0
Total heroin consumption6.27.312.8-3.6-2.90.9
Bone: trabecular number0.50.82.1-1.5-0.3-0.4
Bone: trabecular spacing0.00.00.1-0.2-0.30.0
Bone: trabecular thickness0.30.30.60.60.00.8
Bone: trabecular tissue density0.10.20.40.50.30.6
Water consumed over 24 hours1.72.33.3-1.3-1.81.4
Number of responses in last shaping day1.31.42.01.4-0.61.4