Pus3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Pus3 0.46 0.15 2.2e-09 0.01 0.06 0.07 0.05 4.3e-02 1.2e-07 5.7e-08 2.9e-06
2 LHb mRNA stability Pus3 0.11 0.09 5.2e-03 0.01 0.01 0.01 0.01 1.9e-01 1.9e-01 2.0e-01 1.6e-01
3 NAcc isoform ratio XM_017595618.2 0.03 0.03 7.3e-03 0.02 0.02 0.02 0.02 1.7e-03 4.1e-03 2.9e-03 4.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.40.9-1.00.40.2
Area under the delay curve0.00.00.00.1-0.1-0.1
BMI with tail0.62.13.0-1.01.71.5
BMI without tail3.26.516.1-4.01.41.2
Body weight1.35.65.8-2.42.42.3
Weight adjusted by age0.30.40.6-0.00.80.8
Bone surface0.30.61.7-1.30.40.1
Bone volume0.20.30.8-0.90.30.1
Breakpoint value in progressive ratio session4.54.95.61.9-2.4-2.4
Number of licking bursts0.30.30.40.4-0.6-0.6
Context. condit. distance diff. score0.10.10.10.2-0.4-0.4
Locomotion velocity, session 10.30.40.4-0.50.70.7
Locomotion distance, session 10.50.60.7-0.70.80.8
Locomotion velocity, session 21.82.22.5-1.21.61.6
Locomotion distance, session 20.81.11.2-0.91.11.1
Locomotion velocity, session 30.10.10.2-0.40.20.1
Locomotion distance, session 31.41.62.0-0.91.41.4
Stereotopy head waving bouts, day 33.23.85.21.2-2.2-2.3
Stereotopy head waving duration, day 31.72.12.70.9-1.6-1.7
Locomotion velocity, session 70.80.81.20.5-1.0-1.1
Locomotion distance, session 70.10.10.30.5-0.3-0.3
Stereotopy head waving bouts, day 70.30.30.50.0-0.6-0.7
Stereotopy head waving duration, day 70.20.30.5-0.2-0.5-0.7
Locomotion velocity, session 80.30.40.5-0.70.60.5
Locomotion distance, session 80.50.70.7-0.80.80.8
Degree of sensitization distance0.60.60.70.6-0.8-0.8
Degree of sensitization stereotypy0.20.20.6-0.70.30.1
Conditioned locomotion1.41.72.3-0.81.51.5
Cocaine response after cond. corrected0.20.30.50.7-0.4-0.3
Cocaine response after cond. not corrected1.31.41.51.2-1.2-1.1
Cocaine response before conditioning2.02.43.31.0-1.7-1.8
Saline control response0.60.81.50.40.91.2
Bone: connectivity density0.71.02.0-1.40.90.6
Bone: cortical apparent density1.51.93.5-1.91.20.9
Bone: cortical area1.92.97.8-2.80.90.2
Bone: cortical porosity0.50.51.2-1.1-0.2-0.6
Bone: cortical porosity0.50.50.8-0.7-0.5-0.9
Bone: cortical thickness1.32.15.4-2.30.90.3
Bone: cortical thickness1.01.23.3-1.80.4-0.1
Bone: cortical tissue density1.41.93.3-1.81.20.9
Condit. Reinf. active minus inactive responses0.30.30.40.6-0.6-0.5
Condit. Reinf. active-inactive response ratio0.10.10.10.3-0.3-0.3
Condit. Reinf. active responses0.10.10.20.5-0.4-0.3
Condit. Reinf. inactive responses0.10.10.30.10.40.5
Incentive salience index mean0.10.10.10.3-0.3-0.3
Condit. Reinf. lever presses0.00.00.0-0.20.20.2
Condit. Reinf. active minus inactive responses1.92.32.61.6-1.5-1.4
Condit. Reinf. active-inactive response ratio2.42.52.91.4-1.7-1.7
Condit. Reinf. active responses1.01.32.31.5-1.0-0.8
Condit. Reinf. inactive responses0.60.71.40.20.91.2
Condit. Reinf. lever presses0.20.30.60.7-0.5-0.4
Condit. Reinf. lever reinforcers received0.81.21.91.4-1.0-0.8
Conditioned reinforcement - actives0.40.40.50.3-0.7-0.7
Conditioned reinforcement - inactives2.02.35.8-2.4-0.7-0.7
Conditioned locomotion0.91.11.4-0.8-1.2-1.1
Patch foraging indifference point 0 sec2.53.97.9-2.81.51.4
Patch foraging indifference point AUC1.01.11.7-0.71.31.1
Delay disc. indifference point, 0s delay1.11.21.7-0.61.31.3
Delay disc. indifference point, 16s delay1.81.82.41.6-1.2-1.2
Delay disc. indifference point, 2s delay0.10.10.1-0.2-0.2-0.2
Delay disc. indifference point, 24s delay0.80.81.01.0-0.8-0.8
Delay disc. indifference point, 4s delay1.11.21.5-0.61.21.2
Delay disc. indifference point, 8s delay0.30.31.0-1.00.20.2
Indifference point function ln k0.71.02.8-1.70.40.4
Indifference point function log k0.71.02.8-1.70.40.4
Patch foraging total patch changes 0 sec2.54.18.0-2.81.51.4
Patch foraging total patch changes 12 sec1.11.42.7-1.60.90.9
Patch foraging total patch changes 18 sec0.20.30.7-0.9-0.2-0.1
Patch foraging total patch changes 24 sec0.30.40.4-0.60.60.6
Patch foraging total patch changes 6 sec2.73.95.0-1.52.22.2
Patch foraging time to switch 0 sec3.04.64.72.2-2.2-2.1
Patch foraging water rate 0 sec2.03.24.3-2.11.61.6
Patch foraging water rate 12 sec1.92.94.90.31.92.2
Patch foraging water rate 18 sec0.20.30.50.00.60.7
Patch foraging water rate 24 sec0.91.32.2-1.50.91.0
Patch foraging water rate 6 sec0.71.11.7-0.71.01.3
Seeking ratio, delayed vs. immediate footshock0.10.10.30.5-0.0-0.0
Distance traveled before self-admin2.42.67.12.70.60.6
Distance traveled after self-admin2.22.52.61.51.61.6
Extensor digitorum longus weight1.97.410.43.2-2.6-2.2
Bone: elastic displacement0.10.20.30.20.40.5
Bone: elastic work0.60.81.2-1.1-0.5-1.0
Bone: endosteal estimation0.10.20.6-0.8-0.0-0.3
Bone: endosteal perimeter0.71.51.6-1.31.21.1
Epididymis fat weight1.53.55.2-2.31.71.6
Delta time in closed arm before/after self-admin2.01.94.4-2.10.90.9
Delta time in open arm before/after self-admin0.80.82.2-1.50.10.1
Diff in mean of infusions in LGA sessions0.50.50.60.6-0.8-0.8
Delay discount exponential model param0.10.10.1-0.20.30.3
Extinction: sum of active levers before priming2.82.87.2-2.7-0.8-0.8
Active lever presses in extinction session 64.03.98.02.8-1.3-1.3
Bone: final force0.91.44.1-2.00.5-0.1
Bone: final moment1.01.64.3-2.10.60.1
Food consumed during 24 hour testing period0.91.11.30.8-1.2-1.2
Glucose0.10.10.1-0.1-0.3-0.4
Heart weight0.40.60.9-0.5-0.9-0.8
Delay discount hyperbolic model param0.10.10.1-0.20.20.2
Intermittent access intake day 1-15 change17.717.549.6-7.01.21.2
Intermittent access intake escalation10.310.228.0-5.31.11.1
Intermittent access intake escalation 210.310.224.5-4.91.81.7
Intermitt. access day 1 inactive lever presses3.03.38.52.90.80.8
Intermitt. access day 15 inactive lever presses5.86.317.4-4.2-0.9-0.9
Intermitt. access escalation Index2.01.83.41.81.01.0
Intermittent access day 1 total infusions1.01.21.7-0.5-1.3-1.3
Intermittent access day 15 total infusions7.28.023.8-4.9-0.4-0.4
Intermittent access terminal intake (last 3 days)6.67.220.8-4.6-0.7-0.7
Intermittent access total infusions3.74.19.1-3.0-1.3-1.3
Intermittent access day 1 locomotion1.41.52.10.5-1.4-1.4
Intermittent access day 15 total locomotion0.80.91.4-1.2-0.8-0.8
Intermittent access total locomotion0.50.60.8-0.4-0.9-0.9
Intermittent access standard deviation3.63.910.8-3.30.60.6
Left kidney weight0.92.42.5-1.61.51.5
Right kidney weight2.67.416.7-4.11.71.6
Cocaine induced anxiety1.82.16.3-2.5-0.1-0.1
Post-drug Anxiety0.30.30.4-0.50.60.6
Baseline Anxiety1.21.21.21.11.11.1
Tail length2.05.910.3-3.21.82.0
Length with tail0.72.73.6-1.91.51.5
Length without tail0.71.53.51.90.70.7
Times rat made contact with spout0.20.20.20.3-0.5-0.5
Lifetime Intake6.27.017.4-4.2-1.3-1.3
Liver weight, left0.61.01.6-0.11.31.2
Liver weight, right0.10.20.20.4-0.4-0.5
Locomotor activity1.01.75.0-2.20.10.0
Locomotor testing distance1.22.05.9-2.4-0.1-0.3
Locomotor testing rearing0.50.81.4-1.2-0.6-0.7
Locomotion in novel chamber0.20.30.30.5-0.5-0.5
Locomotion in novel chamber post-restriction0.20.20.40.0-0.6-0.6
Fecal boli incidents, locomotor time 10.30.30.60.8-0.4-0.4
Change in fecal boli incidents, locomotor task0.00.00.0-0.10.00.0
Time >=10cm from walls, locomotor time 10.40.40.60.20.80.8
Bouts of movement, locomotor time 10.40.50.50.6-0.7-0.7
Total resting periods, locomotor time 10.00.10.10.3-0.2-0.2
Rest time, locomotor task time 10.70.81.20.41.11.1
Distance moved, locomotor task time 10.10.20.2-0.3-0.4-0.4
Vertical activity count, locomotor time 11.41.51.61.1-1.3-1.3
Time >=10cm from walls, locomotor time 21.61.71.9-1.11.41.4
Bouts of movement, locomotor time 20.90.91.0-0.8-1.0-1.0
Total resting periods, locomotor time 21.11.21.7-0.4-1.3-1.3
Rest time, locomotor task time 20.40.41.31.1-0.1-0.1
Distance moved, locomotor task time 21.01.12.3-1.50.70.7
Vertical activity count, locomotor time 20.20.20.5-0.70.20.2
Light reinforcement 10.61.12.3-1.50.80.6
Light reinforcement 20.30.40.7-0.80.50.4
Bone: marrow area0.10.20.5-0.7-0.1-0.4
Bone: maximum diameter0.20.41.0-1.00.0-0.3
Bone: maximum force0.91.63.8-1.9-0.2-0.9
Bone: maximum moment0.91.53.9-2.0-0.0-0.7
Mean time between licks in bursts0.00.10.1-0.20.30.3
Mean num. licks in bursts0.10.20.2-0.30.50.5
Cd content in liver0.10.10.2-0.20.50.4
Co content in liver1.92.24.4-2.1-0.7-1.3
Cu content in liver2.12.64.2-0.31.92.1
Fe content in liver4.65.510.13.2-2.0-1.5
K content in liver0.20.20.6-0.8-0.2-0.2
Mg content in liver0.60.60.8-0.60.70.9
Mn content in liver1.11.21.90.3-1.4-1.3
Na content in liver0.20.20.3-0.50.40.5
Rb content in liver0.00.00.1-0.10.20.2
Se content in liver0.60.81.0-1.00.90.8
Sr content in liver4.64.37.8-0.1-2.2-2.8
Zn content in liver0.50.50.7-0.80.70.6
Bone: minimum diameter2.14.08.4-2.91.61.0
Time in familiar zone, hab. session 10.60.50.6-0.70.80.8
Time in novel zone, hab. session 10.90.91.00.8-1.0-1.0
Total zone transitions, hab. session 10.00.00.00.0-0.1-0.1
Total locomotion distance, hab. session 10.20.20.3-0.40.50.5
Locomotion velocity, hab. session 10.60.91.0-0.71.01.0
Time in familiar zone, hab. session 20.00.00.0-0.0-0.0-0.0
Time in novel zone, hab. session 20.10.10.10.2-0.3-0.3
Total zone transitions, hab. session 20.91.11.3-1.01.11.1
Total locomotion distance, hab. session 20.20.30.3-0.50.50.5
Locomotion velocity, hab. session 20.40.50.6-0.70.80.8
Novel to familiar place preference ratio0.00.00.00.1-0.1-0.1
Novelty place preference0.00.00.00.1-0.1-0.1
Time in novel zone, NPP test0.20.20.20.3-0.5-0.5
Total zone transitions, NPP test0.81.11.2-0.91.11.1
Total locomotion distance, NPP test0.50.60.7-0.70.90.9
Locomotion velocity, NPP test1.01.41.6-1.01.31.3
Intraocular pressure0.10.10.10.2-0.4-0.3
Delta distance traveled before/after self-admin2.32.46.2-2.50.70.7
Delta ambulatory time before/after self-admin3.23.510.2-3.20.50.5
Parametrial fat weight3.26.312.0-3.51.91.8
Pavlov. Cond. lever latency0.10.20.3-0.00.40.6
Pavlov. Cond. magazine entry latency0.50.61.3-1.20.60.3
Pavlov. Cond. change in total contacts1.01.01.61.3-1.0-0.8
Pavlov. Cond. index score0.10.10.2-0.50.20.1
Pavlov. Cond. latency score0.00.00.1-0.30.10.0
Pavlov. Cond. lever contacts0.20.20.30.3-0.5-0.6
Pavlov. Cond. magazine entry number0.60.81.11.1-0.9-0.7
Pavlov. Cond. intertrial magazine entries2.32.83.21.8-1.7-1.5
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.40.1-0.1
Pavlov. Cond. response bias0.10.10.20.1-0.4-0.4
Pavlov. Cond. lever latency0.10.20.30.10.40.6
Pavlov. Cond. magazine entry latency0.60.70.8-0.80.90.8
Pavlov. Cond. change in total contacts0.00.00.1-0.3-0.1-0.2
Pavlov. Cond. index score0.00.00.1-0.1-0.2-0.3
Pavlov. Cond. latency score0.00.00.00.1-0.2-0.2
Pavlov. Cond. lever contacts0.00.00.0-0.20.1-0.0
Pavlov. Cond. magazine entry number0.10.10.1-0.00.30.3
Pavlov. Cond. intertrial magazine entries0.10.10.30.6-0.2-0.0
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.2-0.3-0.4
Pavlov. Cond. response bias0.00.00.1-0.3-0.0-0.1
Time in closed arm before self-admin0.50.60.90.10.90.9
Time in closed arm after self-admin0.60.71.00.21.01.0
Time in open arm before self-admin0.80.81.11.0-0.9-0.9
Time in open arm after self-admin0.60.71.5-1.2-0.5-0.5
Bone: periosteal estimation0.61.33.8-1.90.3-0.3
Bone: periosteal perimeter0.81.33.3-1.80.70.3
Bone: post-yield work0.71.01.6-1.30.90.7
Progressive ratio test 1 active lever presses3.13.34.1-1.3-2.0-2.0
Progressive ratio test 1 breakpoint2.62.83.6-1.1-1.9-1.9
Progressive ratio test 1 inactive lever presses2.52.76.1-2.5-1.0-1.0
Progressive ratio test 2 active lever presses3.23.46.6-2.6-1.4-1.3
Progressive ratio test 2 breakpoint3.64.18.6-2.9-1.4-1.3
Progressive ratio test 2 inactive lever presses5.86.717.0-4.1-1.3-1.2
Incentive Sensitization - Responses3.63.610.9-3.3-0.2-0.2
Incentive Sensitization - Breakpoint3.93.911.5-3.4-0.4-0.4
Sum of active levers in priming session hrs 5-60.10.10.30.5-0.2-0.2
Progressive ratio0.40.40.8-0.90.50.4
Food seeking constrained by brief footshock1.01.21.2-1.11.11.1
Seeking ratio, punishment vs. effort0.10.10.20.00.50.5
Retroperitoneal fat weight1.23.94.7-1.62.22.0
Reaction time number correct0.30.50.7-0.80.60.7
Reaction time mean minus median2.63.54.01.9-2.0-1.7
Reaction time mean minus median AUC1.62.13.11.7-1.5-1.1
Reaction time num false alarms0.70.92.4-1.5-0.2-0.6
Reaction time num false alarms AUC1.52.16.1-2.50.2-0.3
Reaction time trials correct on left0.30.50.7-0.80.60.7
Reaction time trials on left0.40.50.7-0.80.60.7
Reaction time mean1.31.82.41.3-1.5-1.1
Reaction time mean AUC1.21.62.21.5-1.3-0.9
Median of all reaction times0.60.81.01.0-1.0-0.7
Reaction time omissions0.10.10.30.10.30.6
Reaction time false alarm rate0.70.92.1-1.4-0.3-0.8
Reaction time premature initiation rate0.40.51.31.10.30.5
Reaction time premature initiations0.30.50.60.70.60.8
Std. dev. reaction times2.53.54.31.6-2.1-1.8
Reaction time trials completed0.40.50.7-0.80.60.7
Reaction time trials AUC0.30.50.5-0.70.60.7
Run reversals in cocaine runway, females1.41.43.0-1.70.70.7
Run reversals in cocaine runway, males3.13.06.9-2.61.01.0
Latency to leave start box in cocaine runway1.21.33.92.0-0.1-0.1
Latency to leave start box in cocaine runway, F0.60.70.90.41.01.0
Latency to leave start box in cocaine runway, M5.35.110.23.2-1.6-1.6
Std. dev. time between licks in bursts0.00.00.00.0-0.1-0.1
Total sessions with >9 infusions3.33.66.0-2.4-1.6-1.5
Short access day 1 total inactive lever presses1.51.72.21.5-1.2-1.2
Short access day 10 total inactive lever presses0.10.10.40.6-0.0-0.0
Short access day 1 total infusions7.47.819.5-4.4-1.4-1.4
Short access day 10 total infusions4.95.510.0-3.2-1.8-1.8
Short access total infusions8.19.123.0-4.8-1.5-1.5
Short access day 1 locomotion1.41.52.0-0.7-1.4-1.4
Short access day 10 total locomotion2.93.28.73.0-0.7-0.7
Short access total locomotion1.61.61.71.3-1.3-1.3
One hour access (0.3 mA shock)9.911.633.1-5.8-0.9-0.9
Compulsive drug intake0.10.10.2-0.00.40.4
One hour access (shock baseline)5.66.517.0-4.1-1.1-1.1
Social response proportion0.10.10.20.40.20.2
Social responses0.00.00.0-0.0-0.2-0.2
Social time0.30.40.6-0.10.70.8
Soleus weight3.510.314.53.8-3.1-2.6
Bone: stiffness0.60.92.0-1.4-0.3-0.9
Tibialis anterior weight1.65.47.42.7-2.2-1.9
Time to tail flick, vehicle, before self-admin1.81.95.5-2.30.20.2
Time to tail flick, vehicle, after self-admin0.30.30.6-0.80.50.5
Time to tail flick, test, before self-admin1.61.62.1-0.7-1.5-1.5
Time to tail flick, test, after self-admin0.70.71.2-1.10.70.7
Delta time to tail flick, vehicle, before/after SA0.90.91.91.40.60.6
Delta time to tail flick, test, before/after SA2.92.63.9-0.22.02.0
Tibia length0.92.53.4-1.81.61.3
Ambulatory time before self-admin4.14.212.23.50.50.5
Ambulatory time after self-admin1.61.72.11.01.41.4
Bone: tissue strength0.00.00.0-0.10.00.0
Total heroin consumption7.48.714.03.7-2.5-2.5
Bone: trabecular number0.10.20.3-0.10.50.6
Bone: trabecular spacing0.50.61.21.1-0.7-0.5
Bone: trabecular thickness1.01.23.0-1.70.70.2
Bone: trabecular tissue density0.00.00.10.3-0.2-0.2
Water consumed over 24 hours2.32.83.31.3-1.8-1.8
Number of responses in last shaping day6.16.37.0-2.7-2.5-2.4