Prlhr

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Prlhr 0.16 0.08 0.0e+00 0.14 0.14 0.15 0.15 2.1e-20 3.9e-20 5.0e-22 8.1e-22
2 PL gene expression Prlhr 0.03 0.02 9.9e-03 0 0 -0 0 1.1e-01 3.6e-01 3.8e-01 2.7e-01
3 IC gene expression Prlhr 0.18 0.13 8.9e-03 -0 0.03 0.02 0.01 4.2e-01 2.0e-02 4.1e-02 9.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density4.68.413.8-3.7-2.91.8
Area under the delay curve1.11.73.90.60.9-2.0
BMI with tail15.754.8130.3-11.4-5.8-0.6
BMI without tail6.232.976.5-8.7-4.7-0.6
Body weight15.366.9150.5-12.3-7.1-0.0
Weight adjusted by age0.82.35.2-2.3-1.2-0.5
Bone surface2.85.49.2-3.0-2.41.1
Bone volume3.67.214.7-3.8-2.50.9
Breakpoint value in progressive ratio session0.71.32.1-1.2-0.5-1.5
Number of licking bursts0.10.51.0-0.6-1.00.2
Context. condit. distance diff. score0.40.40.7-0.6-0.60.8
Locomotion velocity, session 10.60.72.11.4-0.00.3
Locomotion distance, session 11.51.93.71.91.4-0.0
Locomotion velocity, session 20.91.02.31.50.90.3
Locomotion distance, session 20.10.10.2-0.50.40.1
Locomotion velocity, session 31.01.22.41.51.10.3
Locomotion distance, session 30.50.61.21.10.50.5
Stereotopy head waving bouts, day 31.01.21.81.31.2-0.7
Stereotopy head waving duration, day 31.82.32.41.61.5-1.4
Locomotion velocity, session 70.10.10.1-0.2-0.10.4
Locomotion distance, session 70.91.11.5-1.2-0.61.2
Stereotopy head waving bouts, day 72.32.75.41.30.9-2.3
Stereotopy head waving duration, day 71.92.34.71.30.7-2.2
Locomotion velocity, session 80.81.02.30.5-0.61.5
Locomotion distance, session 80.91.33.4-0.3-0.71.8
Degree of sensitization distance1.92.14.3-2.1-1.30.6
Degree of sensitization stereotypy1.21.33.70.40.3-1.9
Conditioned locomotion0.10.10.10.30.3-0.3
Cocaine response after cond. corrected1.62.42.51.51.61.5
Cocaine response after cond. not corrected1.82.63.21.81.21.8
Cocaine response before conditioning0.60.71.9-0.1-1.40.5
Saline control response1.01.42.01.41.4-0.6
Bone: connectivity density1.62.52.8-1.7-1.51.5
Bone: cortical apparent density3.55.510.23.22.21.2
Bone: cortical area6.110.022.3-4.7-2.7-0.3
Bone: cortical porosity0.50.61.1-1.1-0.80.2
Bone: cortical porosity1.41.63.2-1.8-1.3-0.1
Bone: cortical thickness3.35.413.7-3.7-1.6-0.3
Bone: cortical thickness1.82.23.7-1.90.5-1.6
Bone: cortical tissue density3.65.810.83.32.21.4
Condit. Reinf. active minus inactive responses1.82.14.7-0.4-1.22.2
Condit. Reinf. active-inactive response ratio0.80.81.50.7-0.71.2
Condit. Reinf. active responses3.95.06.3-2.2-1.92.5
Condit. Reinf. inactive responses4.55.810.6-3.3-1.91.8
Incentive salience index mean1.82.35.1-0.7-1.12.3
Condit. Reinf. lever presses0.91.33.2-0.7-0.51.8
Condit. Reinf. active minus inactive responses1.32.03.5-1.5-1.9-0.2
Condit. Reinf. active-inactive response ratio0.81.31.6-1.0-1.3-1.1
Condit. Reinf. active responses2.43.55.5-2.3-2.20.2
Condit. Reinf. inactive responses1.52.23.3-1.8-1.70.7
Condit. Reinf. lever presses1.52.24.7-2.2-1.30.3
Condit. Reinf. lever reinforcers received2.13.04.3-2.0-2.10.6
Conditioned reinforcement - actives0.51.95.32.30.5-0.0
Conditioned reinforcement - inactives0.10.20.50.70.30.3
Conditioned locomotion1.42.05.42.30.80.4
Patch foraging indifference point 0 sec1.33.59.6-3.1-0.8-0.7
Patch foraging indifference point AUC0.20.40.8-0.10.9-0.5
Delay disc. indifference point, 0s delay0.40.50.9-0.10.7-1.0
Delay disc. indifference point, 16s delay0.91.33.30.70.4-1.8
Delay disc. indifference point, 2s delay1.61.82.51.01.6-1.4
Delay disc. indifference point, 24s delay0.91.53.60.40.8-1.9
Delay disc. indifference point, 4s delay1.21.33.10.60.7-1.8
Delay disc. indifference point, 8s delay0.81.42.30.81.1-1.5
Indifference point function ln k0.20.60.8-0.9-0.70.7
Indifference point function log k0.20.60.8-0.9-0.70.7
Patch foraging total patch changes 0 sec1.44.211.3-3.4-0.8-0.8
Patch foraging total patch changes 12 sec1.72.36.3-2.5-0.5-0.4
Patch foraging total patch changes 18 sec0.71.74.7-2.2-0.6-0.1
Patch foraging total patch changes 24 sec0.20.61.4-1.20.6-0.2
Patch foraging total patch changes 6 sec1.62.77.8-2.8-0.0-0.6
Patch foraging time to switch 0 sec0.20.82.21.50.10.5
Patch foraging water rate 0 sec0.51.85.0-2.2-0.3-0.6
Patch foraging water rate 12 sec0.41.84.1-2.0-0.9-0.7
Patch foraging water rate 18 sec0.20.50.8-0.90.6-0.6
Patch foraging water rate 24 sec1.11.53.6-1.90.5-0.9
Patch foraging water rate 6 sec0.60.92.5-1.6-0.2-0.3
Seeking ratio, delayed vs. immediate footshock2.23.25.51.90.62.3
Distance traveled before self-admin2.04.37.02.72.3-0.7
Distance traveled after self-admin2.23.96.32.52.3-0.4
Extensor digitorum longus weight0.93.88.2-2.9-1.80.0
Bone: elastic displacement1.11.32.01.01.0-1.4
Bone: elastic work1.21.63.4-0.11.2-1.9
Bone: endosteal estimation1.02.44.4-2.1-1.7-0.1
Bone: endosteal perimeter1.02.54.1-2.0-1.3-1.3
Epididymis fat weight13.266.4150.0-12.2-7.00.2
Delta time in closed arm before/after self-admin0.20.20.5-0.10.10.7
Delta time in open arm before/after self-admin2.02.34.7-1.5-2.20.2
Diff in mean of infusions in LGA sessions0.61.12.80.00.6-1.7
Delay discount exponential model param1.52.04.5-0.7-1.12.1
Extinction: sum of active levers before priming0.20.40.8-0.9-0.2-0.5
Active lever presses in extinction session 61.61.63.5-0.61.0-1.9
Bone: final force3.76.114.7-3.8-1.8-0.4
Bone: final moment4.37.016.4-4.1-2.1-0.2
Food consumed during 24 hour testing period0.20.30.5-0.7-0.60.3
Glucose2.84.56.5-2.5-1.7-2.0
Heart weight8.012.926.5-5.2-3.5-0.4
Delay discount hyperbolic model param1.82.34.9-0.8-1.22.2
Intermittent access intake day 1-15 change0.31.42.01.41.2-0.9
Intermittent access intake escalation0.10.81.31.20.7-0.8
Intermittent access intake escalation 20.10.20.30.50.1-0.6
Intermitt. access day 1 inactive lever presses0.11.12.2-1.5-1.0-0.0
Intermitt. access day 15 inactive lever presses0.10.71.9-0.20.4-1.4
Intermitt. access escalation Index0.20.61.2-0.3-0.71.1
Intermittent access day 1 total infusions0.10.30.50.70.7-0.0
Intermittent access day 15 total infusions0.61.62.51.61.2-0.8
Intermittent access terminal intake (last 3 days)0.61.11.31.11.1-0.8
Intermittent access total infusions0.50.50.90.90.9-0.0
Intermittent access day 1 locomotion0.81.42.51.31.6-0.2
Intermittent access day 15 total locomotion0.31.01.30.81.1-1.0
Intermittent access total locomotion0.91.01.81.21.30.1
Intermittent access standard deviation0.31.62.91.00.9-1.7
Left kidney weight2.620.949.8-7.1-3.6-0.2
Right kidney weight3.725.965.0-8.1-3.50.4
Cocaine induced anxiety0.82.24.82.21.30.3
Post-drug Anxiety0.20.30.4-0.3-0.60.6
Baseline Anxiety2.03.36.2-2.5-1.9-0.0
Tail length0.20.91.9-0.8-1.4-0.2
Length with tail1.56.812.0-3.5-2.90.1
Length without tail2.211.622.1-4.7-3.50.3
Times rat made contact with spout0.91.11.9-1.4-1.10.1
Lifetime Intake0.40.60.80.90.90.1
Liver weight, left6.611.427.5-5.2-2.6-0.0
Liver weight, right5.08.818.9-4.4-2.31.4
Locomotor activity0.10.10.20.4-0.20.3
Locomotor testing distance0.30.71.61.30.60.4
Locomotor testing rearing0.51.92.11.51.3-1.3
Locomotion in novel chamber0.30.40.8-0.60.90.4
Locomotion in novel chamber post-restriction0.72.34.90.92.2-1.1
Fecal boli incidents, locomotor time 10.20.40.7-0.0-0.7-0.8
Change in fecal boli incidents, locomotor task0.80.81.4-1.2-0.60.9
Time >=10cm from walls, locomotor time 10.10.10.1-0.0-0.30.4
Bouts of movement, locomotor time 10.20.30.5-0.6-0.70.1
Total resting periods, locomotor time 10.10.20.3-0.4-0.50.1
Rest time, locomotor task time 10.00.00.1-0.30.10.2
Distance moved, locomotor task time 10.20.71.10.51.1-0.8
Vertical activity count, locomotor time 10.10.51.20.51.1-0.3
Time >=10cm from walls, locomotor time 20.20.51.1-1.10.10.5
Bouts of movement, locomotor time 20.10.30.80.90.2-0.3
Total resting periods, locomotor time 20.10.41.01.00.4-0.3
Rest time, locomotor task time 20.20.30.70.80.2-0.2
Distance moved, locomotor task time 20.20.20.5-0.40.70.2
Vertical activity count, locomotor time 20.10.30.4-0.50.40.7
Light reinforcement 10.10.40.70.10.80.8
Light reinforcement 20.10.30.60.7-0.30.4
Bone: marrow area1.12.74.9-2.2-1.8-0.1
Bone: maximum diameter3.77.414.7-3.8-2.7-0.4
Bone: maximum force3.16.113.8-3.7-2.10.2
Bone: maximum moment3.66.914.9-3.9-2.40.4
Mean time between licks in bursts0.52.83.7-1.1-1.91.9
Mean num. licks in bursts0.00.10.2-0.20.5-0.0
Cd content in liver0.70.81.31.01.2-0.2
Co content in liver0.20.30.7-0.20.9-0.0
Cu content in liver0.10.10.10.10.4-0.4
Fe content in liver2.83.44.8-2.2-2.01.2
K content in liver0.10.10.30.30.2-0.5
Mg content in liver1.51.72.11.11.3-1.5
Mn content in liver0.20.20.4-0.00.5-0.7
Na content in liver1.11.33.7-0.00.3-1.9
Rb content in liver0.20.20.50.30.1-0.7
Se content in liver0.10.10.20.40.2-0.0
Sr content in liver7.16.28.83.03.0-1.0
Zn content in liver2.02.33.31.81.7-0.8
Bone: minimum diameter3.26.111.6-3.4-2.5-0.6
Time in familiar zone, hab. session 10.80.92.3-0.5-0.0-1.5
Time in novel zone, hab. session 11.01.12.21.0-0.41.5
Total zone transitions, hab. session 10.50.61.50.21.2-0.6
Total locomotion distance, hab. session 10.10.10.2-0.3-0.20.5
Locomotion velocity, hab. session 10.20.30.5-0.6-0.30.7
Time in familiar zone, hab. session 21.31.52.8-0.8-1.71.1
Time in novel zone, hab. session 20.60.70.90.60.8-0.9
Total zone transitions, hab. session 20.20.30.60.00.8-0.5
Total locomotion distance, hab. session 20.40.51.0-1.0-0.60.1
Locomotion velocity, hab. session 20.30.41.0-1.0-0.4-0.2
Novel to familiar place preference ratio1.01.32.1-0.8-1.41.1
Novelty place preference0.70.91.6-0.4-1.30.9
Time in novel zone, NPP test1.61.93.9-0.9-2.01.1
Total zone transitions, NPP test0.30.51.0-1.00.10.6
Total locomotion distance, NPP test0.50.71.1-1.1-0.20.9
Locomotion velocity, NPP test0.40.60.9-0.70.60.9
Intraocular pressure0.50.91.2-1.1-1.10.5
Delta distance traveled before/after self-admin0.10.10.20.40.50.0
Delta ambulatory time before/after self-admin0.00.10.10.00.40.2
Parametrial fat weight19.445.8107.5-10.4-5.50.0
Pavlov. Cond. lever latency0.30.30.80.90.4-0.1
Pavlov. Cond. magazine entry latency1.11.52.5-1.6-1.20.7
Pavlov. Cond. change in total contacts2.83.14.6-2.1-2.10.3
Pavlov. Cond. index score1.11.42.6-1.6-1.20.4
Pavlov. Cond. latency score0.81.02.0-1.4-1.00.3
Pavlov. Cond. lever contacts0.50.61.4-1.2-0.6-0.3
Pavlov. Cond. magazine entry number1.21.52.71.61.3-0.5
Pavlov. Cond. intertrial magazine entries2.22.65.2-2.3-1.11.1
Pavlov. Cond. lever-magazine prob. diff.1.51.93.4-1.8-1.40.5
Pavlov. Cond. response bias0.60.81.6-1.3-0.90.3
Pavlov. Cond. lever latency2.12.94.62.11.8-1.0
Pavlov. Cond. magazine entry latency0.20.30.5-0.5-0.70.2
Pavlov. Cond. change in total contacts0.41.01.5-1.2-1.10.5
Pavlov. Cond. index score1.01.62.4-1.6-1.30.8
Pavlov. Cond. latency score0.91.52.4-1.5-1.20.8
Pavlov. Cond. lever contacts1.31.93.3-1.8-1.30.8
Pavlov. Cond. magazine entry number0.10.20.30.60.4-0.1
Pavlov. Cond. intertrial magazine entries0.40.82.4-1.5-0.2-0.3
Pavlov. Cond. lever-magazine prob. diff.0.60.91.4-1.2-1.00.6
Pavlov. Cond. response bias2.02.73.7-1.9-1.91.0
Time in closed arm before self-admin0.00.10.20.20.4-0.1
Time in closed arm after self-admin0.50.60.80.90.90.4
Time in open arm before self-admin0.91.12.81.70.6-0.3
Time in open arm after self-admin0.60.71.9-0.1-1.4-0.5
Bone: periosteal estimation3.89.019.1-4.4-2.8-0.2
Bone: periosteal perimeter3.87.415.0-3.9-2.2-1.5
Bone: post-yield work2.54.35.3-2.3-2.11.7
Progressive ratio test 1 active lever presses0.81.52.41.61.4-0.4
Progressive ratio test 1 breakpoint0.81.42.21.51.3-0.5
Progressive ratio test 1 inactive lever presses0.00.10.10.00.30.3
Progressive ratio test 2 active lever presses0.50.71.10.71.1-0.7
Progressive ratio test 2 breakpoint0.40.50.90.60.9-0.6
Progressive ratio test 2 inactive lever presses0.10.20.5-0.3-0.10.7
Incentive Sensitization - Responses0.10.20.5-0.20.2-0.7
Incentive Sensitization - Breakpoint0.00.10.3-0.20.1-0.5
Sum of active levers in priming session hrs 5-60.20.20.5-0.7-0.2-0.1
Progressive ratio1.44.17.62.82.0-0.8
Food seeking constrained by brief footshock3.03.77.82.81.8-0.6
Seeking ratio, punishment vs. effort0.10.20.3-0.3-0.30.5
Retroperitoneal fat weight21.797.0225.0-15.0-8.10.6
Reaction time number correct0.10.40.5-0.6-0.7-0.4
Reaction time mean minus median0.21.61.91.11.4-1.3
Reaction time mean minus median AUC0.74.65.31.92.2-2.3
Reaction time num false alarms0.61.01.5-1.2-0.71.0
Reaction time num false alarms AUC0.30.61.3-1.1-0.60.5
Reaction time trials correct on left0.10.40.5-0.6-0.7-0.4
Reaction time trials on left0.10.40.6-0.6-0.8-0.4
Reaction time mean2.04.56.62.62.2-1.3
Reaction time mean AUC2.35.58.12.82.5-1.5
Median of all reaction times3.04.77.52.72.3-1.2
Reaction time omissions0.00.00.0-0.00.10.1
Reaction time false alarm rate0.50.61.0-1.0-0.40.8
Reaction time premature initiation rate0.30.51.30.31.1-0.1
Reaction time premature initiations0.10.20.4-0.10.6-0.5
Std. dev. reaction times0.41.21.41.01.1-1.2
Reaction time trials completed0.10.40.6-0.6-0.8-0.4
Reaction time trials AUC0.20.60.9-0.8-0.9-0.4
Run reversals in cocaine runway, females0.20.20.40.60.4-0.3
Run reversals in cocaine runway, males1.61.83.61.31.9-0.3
Latency to leave start box in cocaine runway1.01.42.31.4-0.0-1.5
Latency to leave start box in cocaine runway, F0.30.30.60.4-0.5-0.8
Latency to leave start box in cocaine runway, M1.51.52.81.10.6-1.7
Std. dev. time between licks in bursts0.71.43.4-0.1-0.91.9
Total sessions with >9 infusions1.01.32.61.11.60.3
Short access day 1 total inactive lever presses0.91.94.3-0.7-0.92.1
Short access day 10 total inactive lever presses0.21.53.9-2.0-0.70.5
Short access day 1 total infusions0.20.40.70.40.60.8
Short access day 10 total infusions1.01.63.82.01.0-0.2
Short access total infusions0.71.01.51.21.10.5
Short access day 1 locomotion0.40.71.80.61.3-0.3
Short access day 10 total locomotion0.31.22.01.21.4-0.5
Short access total locomotion1.82.75.01.72.2-0.2
One hour access (0.3 mA shock)0.10.10.20.40.00.1
Compulsive drug intake1.11.62.7-1.6-1.11.0
One hour access (shock baseline)0.41.02.21.50.9-0.1
Social response proportion1.92.43.3-1.7-1.11.8
Social responses2.43.16.9-2.6-1.40.6
Social time0.10.20.4-0.2-0.2-0.6
Soleus weight0.82.44.8-2.20.3-1.5
Bone: stiffness1.52.75.8-2.4-1.50.4
Tibialis anterior weight0.20.61.0-1.0-0.80.2
Time to tail flick, vehicle, before self-admin0.30.30.4-0.6-0.50.6
Time to tail flick, vehicle, after self-admin0.10.20.4-0.00.4-0.6
Time to tail flick, test, before self-admin2.52.94.62.11.8-0.8
Time to tail flick, test, after self-admin1.31.41.9-1.0-1.11.4
Delta time to tail flick, vehicle, before/after SA1.01.13.0-0.10.5-1.7
Delta time to tail flick, test, before/after SA3.64.55.6-2.4-2.11.8
Tibia length0.20.61.1-1.1-0.80.1
Ambulatory time before self-admin1.03.04.62.12.0-0.5
Ambulatory time after self-admin2.33.65.62.42.3-0.3
Bone: tissue strength0.00.00.10.3-0.2-0.0
Total heroin consumption2.12.54.1-1.8-0.0-2.0
Bone: trabecular number2.44.47.7-2.8-2.11.1
Bone: trabecular spacing1.01.43.71.90.30.7
Bone: trabecular thickness4.86.715.9-4.0-1.9-0.7
Bone: trabecular tissue density0.61.01.71.10.31.3
Water consumed over 24 hours0.00.10.2-0.10.0-0.5
Number of responses in last shaping day0.50.71.10.91.10.1