Ppp6r1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Ppp6r1 0.05 0.04 5.5e-04 0.01 0 0.01 0.01 6.4e-02 8.7e-02 2.4e-02 4.2e-02
2 LHb isoform ratio XM_063266289.1 0.13 0.09 8.6e-03 0.05 0.06 -0 0.05 2.7e-02 1.7e-02 4.4e-01 2.5e-02
3 BLA gene expression Ppp6r1 0.06 0.05 3.5e-03 0.04 0.03 0.03 0.03 4.1e-03 7.9e-03 8.5e-03 6.3e-03
4 Adipose mRNA stability Ppp6r1 0.04 0.03 5.3e-03 0.01 0 0.01 0.01 3.2e-02 9.8e-02 3.0e-02 4.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.10.30.3-0.20.0
Area under the delay curve0.40.51.0-0.7-0.61.0-0.2
BMI with tail0.41.41.9-1.4-1.31.2-0.6
BMI without tail0.10.30.50.60.4-0.60.7
Body weight1.46.06.62.42.4-2.62.4
Weight adjusted by age0.30.40.70.80.9-0.5-0.2
Bone surface2.95.36.62.52.5-2.61.6
Bone volume2.24.04.72.22.2-2.11.4
Breakpoint value in progressive ratio session0.20.30.6-0.8-0.7-0.1-0.3
Number of licking bursts0.00.00.1-0.2-0.30.1-0.2
Context. condit. distance diff. score0.20.20.7-0.2-0.3-0.0-0.9
Locomotion velocity, session 11.41.55.2-0.3-0.30.9-2.3
Locomotion distance, session 11.31.62.21.51.5-1.5-0.2
Locomotion velocity, session 20.50.61.6-0.5-0.50.6-1.3
Locomotion distance, session 20.91.32.21.51.5-0.90.4
Locomotion velocity, session 30.10.10.1-0.4-0.30.1-0.1
Locomotion distance, session 30.10.10.20.20.3-0.5-0.3
Stereotopy head waving bouts, day 30.10.10.1-0.2-0.3-0.3-0.3
Stereotopy head waving duration, day 30.00.10.1-0.2-0.3-0.2-0.2
Locomotion velocity, session 70.10.10.30.10.1-0.4-0.5
Locomotion distance, session 70.20.31.00.0-0.00.3-1.0
Stereotopy head waving bouts, day 70.50.51.50.50.4-1.20.5
Stereotopy head waving duration, day 70.40.51.10.50.5-1.10.5
Locomotion velocity, session 80.30.31.2-0.2-0.2-0.2-1.1
Locomotion distance, session 80.10.20.40.40.3-0.3-0.6
Degree of sensitization distance0.00.00.10.20.0-0.1-0.3
Degree of sensitization stereotypy0.20.20.50.20.2-0.70.5
Conditioned locomotion0.20.20.8-0.00.1-0.5-0.9
Cocaine response after cond. corrected1.31.62.3-1.4-1.31.50.5
Cocaine response after cond. not corrected0.30.41.40.20.30.21.2
Cocaine response before conditioning6.07.210.33.23.0-2.81.2
Saline control response0.50.62.1-0.1-0.0-0.6-1.4
Bone: connectivity density0.00.10.1-0.3-0.20.3-0.2
Bone: cortical apparent density0.30.41.1-0.00.11.1-0.8
Bone: cortical area1.01.52.41.31.2-1.60.8
Bone: cortical porosity0.30.40.7-0.9-0.8-0.4-0.0
Bone: cortical porosity0.30.40.9-0.4-0.3-1.00.5
Bone: cortical thickness0.40.61.0-0.9-0.80.4-1.0
Bone: cortical thickness0.10.10.30.20.30.4-0.5
Bone: cortical tissue density0.30.41.2-0.00.01.1-0.7
Condit. Reinf. active minus inactive responses0.20.20.4-0.6-0.5-0.10.4
Condit. Reinf. active-inactive response ratio1.11.22.1-1.4-1.31.0-0.1
Condit. Reinf. active responses0.30.31.00.30.3-1.00.4
Condit. Reinf. inactive responses2.73.35.12.02.0-2.30.5
Incentive salience index mean0.20.20.50.20.3-0.40.7
Condit. Reinf. lever presses0.50.71.11.01.0-0.40.9
Condit. Reinf. active minus inactive responses3.74.86.52.42.3-2.61.2
Condit. Reinf. active-inactive response ratio5.66.58.12.82.7-2.61.9
Condit. Reinf. active responses3.04.27.02.22.1-2.70.6
Condit. Reinf. inactive responses0.20.30.90.10.0-0.9-0.4
Condit. Reinf. lever presses1.52.13.41.11.0-1.81.7
Condit. Reinf. lever reinforcers received3.85.38.62.52.4-2.90.7
Conditioned reinforcement - actives0.20.40.40.60.60.60.6
Conditioned reinforcement - inactives1.42.13.92.01.9-0.50.8
Conditioned locomotion0.10.10.20.40.40.10.5
Patch foraging indifference point 0 sec0.50.91.5-0.8-0.80.9-1.2
Patch foraging indifference point AUC0.50.70.9-0.9-1.00.9-0.7
Delay disc. indifference point, 0s delay0.20.30.8-0.2-0.10.5-0.9
Delay disc. indifference point, 16s delay0.40.40.6-0.7-0.80.30.6
Delay disc. indifference point, 2s delay1.31.43.8-0.9-0.81.9-0.7
Delay disc. indifference point, 24s delay0.30.40.7-0.7-0.80.50.3
Delay disc. indifference point, 4s delay0.10.10.30.20.30.30.5
Delay disc. indifference point, 8s delay0.10.20.4-0.3-0.30.6-0.3
Indifference point function ln k3.56.18.02.82.8-2.71.1
Indifference point function log k3.56.18.02.82.8-2.71.1
Patch foraging total patch changes 0 sec0.40.81.4-0.7-0.80.8-1.2
Patch foraging total patch changes 12 sec0.10.20.3-0.5-0.60.5-0.2
Patch foraging total patch changes 18 sec0.50.81.0-1.0-0.91.0-0.7
Patch foraging total patch changes 24 sec0.10.20.80.20.1-0.20.9
Patch foraging total patch changes 6 sec0.71.11.5-1.0-1.21.1-0.9
Patch foraging time to switch 0 sec1.32.72.8-1.6-1.71.51.7
Patch foraging water rate 0 sec0.40.71.00.90.8-0.8-1.0
Patch foraging water rate 12 sec1.02.23.21.81.7-1.6-0.5
Patch foraging water rate 18 sec0.61.01.11.01.1-1.1-0.8
Patch foraging water rate 24 sec0.50.81.11.01.0-0.9-0.4
Patch foraging water rate 6 sec5.37.79.13.03.0-2.92.0
Seeking ratio, delayed vs. immediate footshock0.30.41.5-0.00.1-0.4-1.2
Distance traveled before self-admin0.91.21.81.11.3-1.1-0.7
Distance traveled after self-admin0.81.02.9-0.8-0.7-0.5-1.7
Extensor digitorum longus weight0.31.31.51.01.1-1.11.2
Bone: elastic displacement0.40.40.8-0.6-0.7-0.2-0.9
Bone: elastic work0.30.40.80.90.7-0.5-0.0
Bone: endosteal estimation3.06.58.42.92.8-2.32.1
Bone: endosteal perimeter2.04.25.32.32.2-2.11.5
Epididymis fat weight0.20.72.50.30.1-0.31.6
Delta time in closed arm before/after self-admin0.30.31.0-0.1-0.31.0-0.4
Delta time in open arm before/after self-admin1.81.84.31.11.3-2.10.1
Diff in mean of infusions in LGA sessions0.20.20.40.00.10.6-0.7
Delay discount exponential model param0.30.30.80.50.5-0.90.1
Extinction: sum of active levers before priming0.10.10.2-0.3-0.3-0.3-0.4
Active lever presses in extinction session 60.20.20.6-0.2-0.1-0.30.8
Bone: final force1.72.74.32.12.0-1.01.1
Bone: final moment2.03.35.32.32.3-1.11.1
Food consumed during 24 hour testing period1.52.13.01.71.6-1.30.9
Glucose1.93.13.4-1.7-1.71.7-1.8
Heart weight1.72.62.71.61.6-1.61.7
Delay discount hyperbolic model param0.40.51.20.60.6-1.10.1
Intermittent access intake day 1-15 change0.40.81.10.91.1-0.80.8
Intermittent access intake escalation0.71.41.81.11.4-1.11.2
Intermittent access intake escalation 20.10.10.10.20.4-0.4-0.2
Intermitt. access day 1 inactive lever presses0.62.12.51.61.5-1.31.4
Intermitt. access day 15 inactive lever presses1.93.94.92.22.0-1.91.7
Intermitt. access escalation Index0.40.60.9-1.0-0.70.8-0.6
Intermittent access day 1 total infusions0.30.40.70.80.8-0.10.6
Intermittent access day 15 total infusions0.71.01.61.01.3-0.41.1
Intermittent access terminal intake (last 3 days)0.60.81.41.01.2-0.10.9
Intermittent access total infusions1.01.22.01.31.4-0.21.0
Intermittent access day 1 locomotion0.81.01.71.21.3-0.10.8
Intermittent access day 15 total locomotion0.40.82.01.11.4-0.20.0
Intermittent access total locomotion1.92.34.31.82.1-0.71.0
Intermittent access standard deviation0.20.50.7-0.8-0.50.8-0.6
Left kidney weight5.224.128.65.35.3-5.33.5
Right kidney weight5.726.230.05.45.3-5.54.1
Cocaine induced anxiety1.11.63.61.11.1-1.90.5
Post-drug Anxiety1.21.33.30.80.8-1.80.8
Baseline Anxiety0.60.61.1-0.9-0.91.0-0.1
Tail length3.312.914.93.93.8-3.82.8
Length with tail3.414.915.83.93.9-4.03.6
Length without tail1.96.38.92.22.4-2.43.0
Times rat made contact with spout0.00.10.1-0.2-0.20.10.4
Lifetime Intake0.70.81.41.11.20.10.9
Liver weight, left1.11.92.11.51.4-1.41.1
Liver weight, right0.00.10.10.20.1-0.20.4
Locomotor activity0.00.10.1-0.2-0.30.30.3
Locomotor testing distance0.10.20.80.30.2-0.20.9
Locomotor testing rearing0.50.91.11.01.0-1.10.8
Locomotion in novel chamber1.52.02.5-1.6-1.31.4-1.3
Locomotion in novel chamber post-restriction0.61.12.5-0.9-0.91.6-0.3
Fecal boli incidents, locomotor time 10.10.20.40.60.6-0.10.1
Change in fecal boli incidents, locomotor task3.53.44.9-1.8-1.82.2-1.4
Time >=10cm from walls, locomotor time 10.00.00.0-0.1-0.10.20.1
Bouts of movement, locomotor time 10.40.51.40.40.5-0.3-1.2
Total resting periods, locomotor time 10.30.31.2-0.1-0.00.2-1.1
Rest time, locomotor task time 10.91.21.81.31.3-0.60.9
Distance moved, locomotor task time 10.91.32.0-1.4-1.40.5-1.0
Vertical activity count, locomotor time 11.63.95.0-2.1-2.01.5-2.2
Time >=10cm from walls, locomotor time 20.50.71.0-1.0-1.00.9-0.4
Bouts of movement, locomotor time 20.00.00.00.10.1-0.00.1
Total resting periods, locomotor time 20.00.00.00.20.20.2-0.0
Rest time, locomotor task time 20.10.10.20.00.10.3-0.5
Distance moved, locomotor task time 20.10.10.2-0.5-0.5-0.1-0.4
Vertical activity count, locomotor time 20.20.30.5-0.6-0.50.4-0.7
Light reinforcement 10.30.72.2-0.5-0.40.5-1.5
Light reinforcement 21.82.83.1-1.7-1.51.7-1.8
Bone: marrow area3.06.68.52.92.8-2.32.2
Bone: maximum diameter1.42.63.21.61.6-1.81.5
Bone: maximum force2.95.17.32.72.6-1.81.7
Bone: maximum moment3.15.58.12.92.8-1.91.7
Mean time between licks in bursts0.51.21.9-0.9-1.01.0-1.4
Mean num. licks in bursts0.10.20.50.40.4-0.10.7
Cd content in liver1.71.92.71.61.6-1.50.2
Co content in liver0.50.61.20.80.80.2-1.1
Cu content in liver0.60.71.11.01.1-0.80.2
Fe content in liver0.20.20.40.50.6-0.50.1
K content in liver0.10.10.1-0.1-0.0-0.4-0.3
Mg content in liver0.00.00.1-0.3-0.3-0.10.1
Mn content in liver0.30.30.9-0.1-0.1-1.00.6
Na content in liver2.52.63.8-2.0-1.91.0-1.4
Rb content in liver3.13.65.41.71.8-2.31.6
Se content in liver1.21.42.4-1.6-1.50.7-0.6
Sr content in liver7.66.67.3-2.6-2.42.7-2.5
Zn content in liver0.30.40.5-0.7-0.60.70.1
Bone: minimum diameter3.56.47.92.82.7-2.81.7
Time in familiar zone, hab. session 12.12.14.12.01.9-0.7-0.3
Time in novel zone, hab. session 11.91.93.6-1.9-1.80.7-0.6
Total zone transitions, hab. session 10.30.40.90.60.6-0.3-1.0
Total locomotion distance, hab. session 10.20.31.20.20.30.1-1.1
Locomotion velocity, hab. session 10.10.20.60.10.20.1-0.8
Time in familiar zone, hab. session 23.43.64.22.12.0-1.51.9
Time in novel zone, hab. session 22.02.02.7-1.6-1.61.0-1.3
Total zone transitions, hab. session 21.62.13.21.61.6-1.80.3
Total locomotion distance, hab. session 20.10.10.5-0.00.00.0-0.7
Locomotion velocity, hab. session 20.20.20.8-0.2-0.10.1-0.9
Novel to familiar place preference ratio0.10.10.20.20.2-0.40.3
Novelty place preference0.20.20.40.40.4-0.60.3
Time in novel zone, NPP test0.20.30.40.50.5-0.60.4
Total zone transitions, NPP test0.10.20.30.60.5-0.2-0.2
Total locomotion distance, NPP test0.30.40.50.60.6-0.70.5
Locomotion velocity, NPP test0.20.30.60.60.6-0.80.2
Intraocular pressure0.10.10.1-0.4-0.30.30.1
Delta distance traveled before/after self-admin1.51.62.6-1.6-1.60.7-0.8
Delta ambulatory time before/after self-admin1.11.32.0-1.3-1.40.9-0.9
Parametrial fat weight1.43.34.5-2.1-2.11.9-0.9
Pavlov. Cond. lever latency0.10.20.4-0.3-0.40.2-0.6
Pavlov. Cond. magazine entry latency0.50.70.9-1.0-0.90.90.1
Pavlov. Cond. change in total contacts0.30.30.6-0.6-0.50.7-0.3
Pavlov. Cond. index score0.30.30.6-0.6-0.60.8-0.1
Pavlov. Cond. latency score0.20.20.5-0.5-0.50.70.1
Pavlov. Cond. lever contacts0.30.41.00.40.4-0.41.0
Pavlov. Cond. magazine entry number0.20.20.40.50.5-0.6-0.2
Pavlov. Cond. intertrial magazine entries0.70.93.4-0.2-0.3-0.2-1.8
Pavlov. Cond. lever-magazine prob. diff.0.30.30.5-0.6-0.60.7-0.1
Pavlov. Cond. response bias0.10.20.7-0.1-0.10.20.8
Pavlov. Cond. lever latency0.20.30.50.70.60.20.3
Pavlov. Cond. magazine entry latency0.50.61.0-1.0-1.00.4-0.5
Pavlov. Cond. change in total contacts0.30.41.30.30.3-1.2-0.3
Pavlov. Cond. index score0.10.10.3-0.3-0.3-0.5-0.1
Pavlov. Cond. latency score0.20.30.6-0.7-0.7-0.1-0.3
Pavlov. Cond. lever contacts0.10.10.3-0.4-0.3-0.5-0.1
Pavlov. Cond. magazine entry number0.40.40.60.80.8-0.50.5
Pavlov. Cond. intertrial magazine entries2.74.05.02.22.2-2.11.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.4-0.4-0.3-0.3
Pavlov. Cond. response bias0.20.31.00.30.3-1.00.3
Time in closed arm before self-admin0.81.01.60.91.0-1.20.8
Time in closed arm after self-admin0.20.20.60.40.20.10.8
Time in open arm before self-admin2.32.54.2-1.5-1.62.1-1.0
Time in open arm after self-admin0.40.41.1-0.6-0.4-0.1-1.0
Bone: periosteal estimation2.35.06.22.52.4-2.31.7
Bone: periosteal perimeter1.83.24.12.01.9-2.01.0
Bone: post-yield work3.65.25.72.42.4-2.42.0
Progressive ratio test 1 active lever presses0.30.40.80.90.9-0.0-0.2
Progressive ratio test 1 breakpoint0.30.40.80.90.90.0-0.2
Progressive ratio test 1 inactive lever presses1.82.64.62.22.0-0.81.0
Progressive ratio test 2 active lever presses0.50.61.00.80.9-0.21.0
Progressive ratio test 2 breakpoint0.70.71.20.91.0-0.31.1
Progressive ratio test 2 inactive lever presses2.03.35.02.22.2-1.31.2
Incentive Sensitization - Responses1.62.33.11.31.5-1.41.8
Incentive Sensitization - Breakpoint1.31.72.61.01.2-1.21.6
Sum of active levers in priming session hrs 5-60.10.10.4-0.3-0.1-0.6-0.3
Progressive ratio0.10.20.50.0-0.0-0.6-0.7
Food seeking constrained by brief footshock1.51.87.1-0.0-0.00.2-2.7
Seeking ratio, punishment vs. effort0.20.30.60.70.7-0.20.1
Retroperitoneal fat weight3.012.717.7-4.1-4.23.9-1.0
Reaction time number correct0.20.51.3-0.4-0.40.4-1.1
Reaction time mean minus median0.00.00.0-0.10.0-0.0-0.0
Reaction time mean minus median AUC0.00.00.0-0.1-0.00.1-0.0
Reaction time num false alarms0.00.00.1-0.2-0.00.2-0.3
Reaction time num false alarms AUC0.40.61.2-0.7-0.50.7-1.1
Reaction time trials correct on left0.20.51.3-0.4-0.40.4-1.1
Reaction time trials on left0.20.51.3-0.4-0.40.4-1.2
Reaction time mean0.71.11.51.01.0-0.91.2
Reaction time mean AUC0.30.51.20.60.6-0.51.1
Median of all reaction times0.81.11.71.01.0-0.91.3
Reaction time omissions0.30.41.1-0.5-0.20.5-1.0
Reaction time false alarm rate0.10.20.3-0.4-0.20.5-0.5
Reaction time premature initiation rate0.10.20.60.20.2-0.20.8
Reaction time premature initiations0.00.00.1-0.1-0.10.10.3
Std. dev. reaction times0.40.70.80.70.8-0.80.9
Reaction time trials completed0.20.51.3-0.4-0.40.4-1.2
Reaction time trials AUC0.10.30.8-0.3-0.40.3-0.9
Run reversals in cocaine runway, females0.70.71.30.70.6-0.71.2
Run reversals in cocaine runway, males0.10.10.20.20.10.50.3
Latency to leave start box in cocaine runway0.40.50.60.80.8-0.50.7
Latency to leave start box in cocaine runway, F0.10.10.10.30.30.00.3
Latency to leave start box in cocaine runway, M1.41.31.61.11.3-1.11.1
Std. dev. time between licks in bursts0.81.13.9-0.4-0.50.3-2.0
Total sessions with >9 infusions0.50.61.21.01.1-0.20.3
Short access day 1 total inactive lever presses0.91.12.21.01.0-0.51.5
Short access day 10 total inactive lever presses0.10.30.50.50.5-0.10.7
Short access day 1 total infusions0.10.10.60.10.10.80.0
Short access day 10 total infusions0.20.20.8-0.1-0.10.9-0.3
Short access total infusions0.40.51.8-0.2-0.21.3-0.1
Short access day 1 locomotion0.40.50.90.80.70.31.0
Short access day 10 total locomotion0.20.40.90.80.9-0.1-0.3
Short access total locomotion0.30.30.50.30.50.7-0.7
One hour access (0.3 mA shock)3.33.85.62.22.4-1.71.5
Compulsive drug intake1.92.34.11.41.6-2.00.6
One hour access (shock baseline)0.30.51.00.70.60.31.0
Social response proportion1.21.42.51.01.0-1.01.6
Social responses3.03.94.22.02.0-2.01.8
Social time2.53.44.82.22.1-2.10.2
Soleus weight0.10.20.30.40.4-0.50.6
Bone: stiffness2.33.75.42.32.3-1.71.1
Tibialis anterior weight0.41.32.0-1.4-1.41.20.2
Time to tail flick, vehicle, before self-admin0.30.30.40.60.6-0.6-0.3
Time to tail flick, vehicle, after self-admin0.60.82.30.60.7-0.41.5
Time to tail flick, test, before self-admin0.80.81.4-0.6-0.31.1-1.2
Time to tail flick, test, after self-admin0.10.10.2-0.3-0.5-0.00.0
Delta time to tail flick, vehicle, before/after SA0.50.51.0-0.3-0.20.91.0
Delta time to tail flick, test, before/after SA0.60.61.40.50.3-1.20.9
Tibia length4.111.312.83.63.4-3.62.8
Ambulatory time before self-admin0.81.32.01.11.3-1.4-0.4
Ambulatory time after self-admin0.70.92.2-0.1-0.0-1.1-1.5
Bone: tissue strength0.30.31.00.40.30.4-1.0
Total heroin consumption0.10.10.2-0.2-0.2-0.5-0.2
Bone: trabecular number0.20.30.5-0.5-0.50.7-0.5
Bone: trabecular spacing0.00.10.20.10.0-0.00.5
Bone: trabecular thickness0.00.00.00.10.10.00.1
Bone: trabecular tissue density0.40.51.0-1.0-1.00.40.2
Water consumed over 24 hours0.50.71.31.21.1-0.60.1
Number of responses in last shaping day0.20.30.60.30.10.70.7