Ppp1r14a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Ppp1r14a 0.02 0.02 7.3e-04 0.01 0.02 0.02 0.02 9.0e-03 2.5e-03 4.2e-03 5.5e-03
2 Brain mRNA stability Ppp1r14a 0.3 0 1.5e-10 0.11 0.1 0.1 0.1 4.7e-10 1.6e-09 4.0e-09 8.4e-10
3 Liver gene expression Ppp1r14a 0.19 0.1 0.0e+00 0.11 0.12 0.13 0.13 1.5e-12 2.5e-13 6.8e-14 8.5e-14
4 NAcc isoform ratio NM_130403.2 0.1 0.07 9.3e-03 -0 0.01 0 -0 7.3e-01 2.5e-02 2.8e-01 6.9e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.1-0.30.20.2-0.2
Area under the delay curve1.51.55.70.5-0.4-0.1-2.4
BMI with tail0.31.02.5-0.90.70.61.6
BMI without tail0.10.30.50.6-0.7-0.6-0.0
Body weight2.18.912.63.4-3.5-3.3-0.3
Weight adjusted by age0.20.20.3-0.50.40.40.5
Bone surface0.20.40.60.7-0.7-0.7-0.5
Bone volume0.20.40.50.7-0.7-0.7-0.3
Breakpoint value in progressive ratio session2.72.96.01.8-1.0-1.2-2.5
Number of licking bursts2.32.73.2-1.81.81.61.3
Context. condit. distance diff. score0.10.10.2-0.20.30.5-0.3
Locomotion velocity, session 11.82.02.9-1.51.71.6-0.5
Locomotion distance, session 10.70.81.31.0-1.0-1.2-0.1
Locomotion velocity, session 20.30.30.5-0.70.50.70.1
Locomotion distance, session 20.91.22.6-1.10.80.71.6
Locomotion velocity, session 30.30.40.6-0.60.60.50.8
Locomotion distance, session 34.44.86.62.5-2.6-2.60.3
Stereotopy head waving bouts, day 31.01.21.8-1.01.01.01.4
Stereotopy head waving duration, day 32.32.83.9-1.91.92.00.6
Locomotion velocity, session 70.00.00.20.1-0.10.0-0.4
Locomotion distance, session 70.10.10.10.3-0.3-0.30.1
Stereotopy head waving bouts, day 70.30.30.9-0.40.20.21.0
Stereotopy head waving duration, day 71.01.31.5-1.21.11.01.1
Locomotion velocity, session 83.33.94.8-2.22.12.11.4
Locomotion distance, session 80.40.50.6-0.80.70.70.6
Degree of sensitization distance2.72.73.8-1.71.82.0-0.8
Degree of sensitization stereotypy0.40.41.5-0.30.1-0.11.2
Conditioned locomotion0.81.03.30.3-0.5-0.61.8
Cocaine response after cond. corrected0.30.40.40.5-0.6-0.60.6
Cocaine response after cond. not corrected0.70.81.80.6-0.8-0.81.3
Cocaine response before conditioning1.21.51.81.1-1.2-1.21.3
Saline control response0.30.40.50.7-0.7-0.70.2
Bone: connectivity density0.40.60.7-0.80.70.9-0.6
Bone: cortical apparent density2.02.63.3-1.81.81.71.0
Bone: cortical area1.62.43.51.8-1.7-1.90.1
Bone: cortical porosity1.61.83.9-1.20.90.92.0
Bone: cortical porosity1.92.14.7-1.31.01.02.2
Bone: cortical thickness0.61.11.51.1-1.1-1.20.4
Bone: cortical thickness0.70.82.7-0.60.40.41.6
Bone: cortical tissue density2.33.03.9-2.01.91.91.0
Condit. Reinf. active minus inactive responses0.20.30.5-0.60.70.50.1
Condit. Reinf. active-inactive response ratio0.20.20.4-0.40.60.50.0
Condit. Reinf. active responses1.21.51.8-1.31.30.91.3
Condit. Reinf. inactive responses0.91.12.1-1.10.90.61.4
Incentive salience index mean0.10.10.4-0.20.20.00.6
Condit. Reinf. lever presses0.10.20.30.3-0.4-0.50.4
Condit. Reinf. active minus inactive responses3.13.85.32.3-2.2-2.3-0.3
Condit. Reinf. active-inactive response ratio2.12.32.81.4-1.5-1.71.4
Condit. Reinf. active responses3.75.27.22.7-2.5-2.6-0.8
Condit. Reinf. inactive responses2.12.53.41.6-1.5-1.3-1.8
Condit. Reinf. lever presses6.69.011.83.4-3.1-3.1-2.3
Condit. Reinf. lever reinforcers received4.36.18.42.9-2.8-2.8-0.6
Conditioned reinforcement - actives0.40.40.60.3-0.8-0.60.7
Conditioned reinforcement - inactives1.61.82.61.5-1.6-1.5-0.0
Conditioned locomotion1.31.52.1-1.51.01.21.3
Patch foraging indifference point 0 sec0.20.30.40.5-0.7-0.70.3
Patch foraging indifference point AUC0.40.40.6-0.70.50.50.8
Delay disc. indifference point, 0s delay1.01.11.90.9-1.0-0.8-1.4
Delay disc. indifference point, 16s delay2.52.64.91.4-1.4-1.1-2.2
Delay disc. indifference point, 2s delay2.12.49.20.5-0.20.1-3.0
Delay disc. indifference point, 24s delay1.81.82.11.4-1.3-1.1-1.5
Delay disc. indifference point, 4s delay0.20.30.70.4-0.4-0.3-0.8
Delay disc. indifference point, 8s delay1.41.43.8-0.50.81.0-2.0
Indifference point function ln k0.40.50.70.8-0.7-0.7-0.7
Indifference point function log k0.40.50.70.8-0.7-0.7-0.7
Patch foraging total patch changes 0 sec0.30.40.60.7-0.8-0.80.0
Patch foraging total patch changes 12 sec0.20.30.50.5-0.7-0.60.3
Patch foraging total patch changes 18 sec0.20.20.5-0.40.20.30.7
Patch foraging total patch changes 24 sec0.70.81.00.9-1.0-1.0-0.5
Patch foraging total patch changes 6 sec0.10.20.30.2-0.4-0.40.5
Patch foraging time to switch 0 sec0.91.42.1-1.21.21.5-0.7
Patch foraging water rate 0 sec0.50.80.9-0.90.90.71.0
Patch foraging water rate 12 sec0.60.91.51.1-1.0-1.2-0.3
Patch foraging water rate 18 sec0.71.01.3-0.71.10.9-1.2
Patch foraging water rate 24 sec0.20.20.40.6-0.4-0.60.3
Patch foraging water rate 6 sec0.20.41.00.5-0.2-0.4-1.0
Seeking ratio, delayed vs. immediate footshock1.01.21.91.4-1.0-1.1-0.7
Distance traveled before self-admin1.31.32.01.4-1.1-1.40.5
Distance traveled after self-admin4.55.16.62.6-2.5-2.6-0.8
Extensor digitorum longus weight0.20.60.9-0.90.90.90.1
Bone: elastic displacement0.00.00.1-0.20.20.2-0.3
Bone: elastic work1.72.13.01.7-1.6-1.7-0.1
Bone: endosteal estimation1.12.53.11.8-1.7-1.7-1.0
Bone: endosteal perimeter1.32.73.11.7-1.7-1.6-1.5
Epididymis fat weight0.00.00.1-0.20.00.10.3
Delta time in closed arm before/after self-admin0.90.91.30.8-1.2-0.8-0.9
Delta time in open arm before/after self-admin0.70.72.3-0.40.60.21.5
Diff in mean of infusions in LGA sessions0.20.20.60.4-0.1-0.2-0.8
Delay discount exponential model param1.41.45.2-0.60.40.22.3
Extinction: sum of active levers before priming1.31.31.61.3-1.2-1.2-0.8
Active lever presses in extinction session 61.51.53.70.9-0.9-0.7-1.9
Bone: final force1.32.12.91.6-1.7-1.70.1
Bone: final moment1.93.14.32.0-2.0-2.10.1
Food consumed during 24 hour testing period0.40.50.60.8-0.6-0.7-0.8
Glucose0.20.30.4-0.70.60.50.1
Heart weight0.50.70.90.9-0.9-0.90.5
Delay discount hyperbolic model param1.31.45.4-0.50.30.12.3
Intermittent access intake day 1-15 change1.61.52.21.3-1.5-1.3-0.8
Intermittent access intake escalation1.21.21.51.1-1.2-1.1-0.9
Intermittent access intake escalation 22.62.53.41.8-1.9-1.8-0.3
Intermitt. access day 1 inactive lever presses1.41.54.01.0-0.8-0.7-2.0
Intermitt. access day 15 inactive lever presses0.70.71.70.7-0.7-0.6-1.3
Intermitt. access escalation Index0.10.00.10.20.1-0.20.3
Intermittent access day 1 total infusions1.01.24.0-0.50.60.22.0
Intermittent access day 15 total infusions0.50.60.90.8-0.8-0.90.5
Intermittent access terminal intake (last 3 days)1.11.21.51.0-1.1-1.20.9
Intermittent access total infusions0.50.61.30.4-0.5-0.81.2
Intermittent access day 1 locomotion0.60.72.4-0.40.20.11.6
Intermittent access day 15 total locomotion0.00.00.1-0.2-0.10.20.3
Intermittent access total locomotion0.50.61.1-0.90.40.61.0
Intermittent access standard deviation4.95.26.62.6-2.3-2.5-1.7
Left kidney weight2.26.18.12.5-2.7-2.81.5
Right kidney weight3.18.812.03.5-3.4-3.4-0.1
Cocaine induced anxiety0.40.41.60.2-0.3-0.1-1.3
Post-drug Anxiety0.60.72.3-0.40.10.6-1.5
Baseline Anxiety0.70.82.2-0.60.60.41.5
Tail length4.714.218.44.3-4.2-4.0-2.1
Length with tail6.724.532.75.7-5.6-5.2-2.6
Length without tail2.96.49.03.0-2.8-2.7-1.2
Times rat made contact with spout0.91.02.3-0.90.70.61.5
Lifetime Intake0.40.41.6-0.10.1-0.21.3
Liver weight, left0.50.82.7-0.60.20.21.6
Liver weight, right0.10.10.4-0.0-0.1-0.10.6
Locomotor activity0.50.81.1-0.90.80.71.1
Locomotor testing distance0.71.21.7-1.21.31.10.5
Locomotor testing rearing1.52.42.7-1.71.61.51.4
Locomotion in novel chamber0.30.40.5-0.50.70.7-0.7
Locomotion in novel chamber post-restriction0.60.72.60.40.2-0.0-1.6
Fecal boli incidents, locomotor time 12.42.63.7-1.71.71.9-0.9
Change in fecal boli incidents, locomotor task0.10.10.10.4-0.3-0.30.3
Time >=10cm from walls, locomotor time 10.00.00.0-0.10.10.10.0
Bouts of movement, locomotor time 12.22.48.11.0-0.6-0.5-2.8
Total resting periods, locomotor time 12.32.58.90.9-0.4-0.4-3.0
Rest time, locomotor task time 10.00.00.1-0.20.20.2-0.1
Distance moved, locomotor task time 10.40.41.50.1-0.3-0.31.2
Vertical activity count, locomotor time 10.80.91.21.0-1.1-1.10.4
Time >=10cm from walls, locomotor time 20.30.31.2-0.1-0.1-0.11.1
Bouts of movement, locomotor time 21.11.24.6-0.10.00.5-2.1
Total resting periods, locomotor time 20.80.82.9-0.20.10.6-1.7
Rest time, locomotor task time 20.30.30.70.4-0.2-0.60.9
Distance moved, locomotor task time 20.20.20.7-0.40.00.20.8
Vertical activity count, locomotor time 20.30.30.50.5-0.6-0.4-0.7
Light reinforcement 10.10.10.3-0.50.40.40.2
Light reinforcement 25.16.99.7-2.93.03.1-0.5
Bone: marrow area1.22.63.21.8-1.8-1.7-1.0
Bone: maximum diameter1.22.12.91.6-1.7-1.7-0.3
Bone: maximum force2.23.85.32.3-2.2-2.3-0.3
Bone: maximum moment2.95.16.92.6-2.6-2.6-0.3
Mean time between licks in bursts0.10.10.20.4-0.4-0.20.3
Mean num. licks in bursts0.70.81.31.0-1.1-1.0-0.1
Cd content in liver0.30.30.4-0.50.70.6-0.5
Co content in liver1.51.72.5-1.51.61.50.0
Cu content in liver0.81.01.31.1-1.1-1.20.3
Fe content in liver0.30.40.6-0.50.50.6-0.8
K content in liver0.60.50.80.6-0.7-0.70.9
Mg content in liver0.50.52.0-0.1-0.1-0.01.4
Mn content in liver2.22.59.50.1-0.4-0.63.1
Na content in liver4.14.36.12.3-2.5-2.40.3
Rb content in liver0.00.00.00.1-0.10.0-0.2
Se content in liver5.16.39.7-2.52.22.03.1
Sr content in liver0.80.70.9-0.90.90.80.7
Zn content in liver0.20.30.4-0.60.60.60.1
Bone: minimum diameter4.38.110.93.3-3.2-3.3-0.5
Time in familiar zone, hab. session 10.30.30.50.5-0.6-0.7-0.3
Time in novel zone, hab. session 10.30.30.4-0.50.50.50.7
Total zone transitions, hab. session 10.50.71.00.7-0.9-1.00.6
Total locomotion distance, hab. session 12.73.85.02.2-2.2-2.2-0.8
Locomotion velocity, hab. session 11.21.72.21.4-1.4-1.5-0.7
Time in familiar zone, hab. session 21.51.54.11.0-0.8-0.7-2.0
Time in novel zone, hab. session 20.90.91.2-0.90.80.81.1
Total zone transitions, hab. session 21.31.76.1-0.70.40.12.5
Total locomotion distance, hab. session 20.30.40.60.6-0.6-0.80.7
Locomotion velocity, hab. session 20.40.51.20.4-0.5-0.71.1
Novel to familiar place preference ratio1.01.01.51.0-1.2-1.20.4
Novelty place preference0.90.91.40.9-1.1-1.20.5
Time in novel zone, NPP test0.60.60.90.7-0.8-0.90.5
Total zone transitions, NPP test0.10.10.2-0.50.40.30.1
Total locomotion distance, NPP test1.82.52.91.7-1.6-1.6-1.4
Locomotion velocity, NPP test2.13.03.71.9-1.8-1.8-1.2
Intraocular pressure0.10.20.7-0.00.10.1-0.8
Delta distance traveled before/after self-admin1.92.15.21.2-1.1-0.8-2.3
Delta ambulatory time before/after self-admin1.51.71.91.3-1.4-1.1-1.3
Parametrial fat weight0.71.31.6-1.21.11.11.2
Pavlov. Cond. lever latency0.50.62.0-0.10.40.5-1.4
Pavlov. Cond. magazine entry latency0.10.10.2-0.40.50.30.1
Pavlov. Cond. change in total contacts0.00.00.1-0.00.0-0.10.4
Pavlov. Cond. index score0.30.41.7-0.20.0-0.11.3
Pavlov. Cond. latency score0.20.31.2-0.0-0.2-0.21.1
Pavlov. Cond. lever contacts0.60.81.00.8-1.0-1.00.7
Pavlov. Cond. magazine entry number0.10.10.30.4-0.4-0.2-0.5
Pavlov. Cond. intertrial magazine entries0.40.41.1-0.50.40.41.0
Pavlov. Cond. lever-magazine prob. diff.0.60.72.6-0.1-0.1-0.31.6
Pavlov. Cond. response bias0.10.20.40.2-0.2-0.40.6
Pavlov. Cond. lever latency3.34.55.7-2.42.12.21.8
Pavlov. Cond. magazine entry latency2.22.52.81.7-1.5-1.5-1.7
Pavlov. Cond. change in total contacts6.28.611.23.3-2.9-3.0-2.4
Pavlov. Cond. index score3.54.55.22.3-2.0-2.0-2.2
Pavlov. Cond. latency score3.34.14.82.2-1.9-1.9-2.1
Pavlov. Cond. lever contacts3.24.35.52.3-2.0-2.1-1.8
Pavlov. Cond. magazine entry number2.32.85.5-1.61.31.32.3
Pavlov. Cond. intertrial magazine entries1.52.03.2-1.41.31.11.8
Pavlov. Cond. lever-magazine prob. diff.3.64.65.62.4-2.1-2.1-1.9
Pavlov. Cond. response bias3.54.86.22.5-2.2-2.2-1.8
Time in closed arm before self-admin0.40.50.8-0.40.80.50.9
Time in closed arm after self-admin0.50.51.40.6-0.4-0.2-1.2
Time in open arm before self-admin1.41.52.21.3-1.5-1.3-0.6
Time in open arm after self-admin1.11.32.60.7-0.8-1.11.6
Bone: periosteal estimation1.73.64.82.2-2.1-2.2-0.6
Bone: periosteal perimeter1.72.83.61.9-1.8-1.8-1.0
Bone: post-yield work1.11.42.11.2-1.1-1.0-1.5
Progressive ratio test 1 active lever presses0.80.91.11.1-0.7-1.00.9
Progressive ratio test 1 breakpoint1.11.21.71.3-0.9-1.20.8
Progressive ratio test 1 inactive lever presses0.70.71.20.7-0.9-0.6-1.1
Progressive ratio test 2 active lever presses0.40.40.60.7-0.7-0.7-0.0
Progressive ratio test 2 breakpoint0.40.40.60.7-0.7-0.80.3
Progressive ratio test 2 inactive lever presses2.83.24.02.0-1.8-1.8-1.5
Incentive Sensitization - Responses0.10.10.40.1-0.3-0.1-0.6
Incentive Sensitization - Breakpoint0.10.10.5-0.1-0.20.1-0.7
Sum of active levers in priming session hrs 5-60.00.00.00.2-0.1-0.00.1
Progressive ratio0.30.40.9-0.50.30.5-1.0
Food seeking constrained by brief footshock2.53.14.32.1-1.9-1.9-1.0
Seeking ratio, punishment vs. effort1.11.32.31.5-1.0-1.30.2
Retroperitoneal fat weight1.34.25.8-2.21.81.72.4
Reaction time number correct0.50.72.9-0.1-0.0-0.11.7
Reaction time mean minus median0.10.10.20.4-0.4-0.40.2
Reaction time mean minus median AUC0.20.20.30.5-0.5-0.50.4
Reaction time num false alarms0.91.21.6-1.31.01.10.9
Reaction time num false alarms AUC1.21.72.2-1.51.31.41.0
Reaction time trials correct on left0.50.72.9-0.1-0.0-0.11.7
Reaction time trials on left0.50.83.0-0.20.0-0.11.7
Reaction time mean0.10.10.1-0.30.40.30.2
Reaction time mean AUC0.20.30.3-0.50.60.50.5
Median of all reaction times0.20.20.4-0.50.60.50.2
Reaction time omissions0.30.30.4-0.60.60.60.5
Reaction time false alarm rate0.81.11.6-1.21.11.3-0.2
Reaction time premature initiation rate0.10.20.70.2-0.1-0.1-0.9
Reaction time premature initiations0.00.00.00.1-0.0-0.10.1
Std. dev. reaction times0.00.10.10.3-0.1-0.20.3
Reaction time trials completed0.50.83.0-0.20.0-0.11.7
Reaction time trials AUC0.71.03.8-0.30.20.02.0
Run reversals in cocaine runway, females0.30.30.4-0.40.50.5-0.6
Run reversals in cocaine runway, males1.51.42.3-1.11.51.21.0
Latency to leave start box in cocaine runway0.00.00.0-0.2-0.00.2-0.0
Latency to leave start box in cocaine runway, F0.30.40.6-0.70.60.70.1
Latency to leave start box in cocaine runway, M0.10.10.10.3-0.4-0.3-0.3
Std. dev. time between licks in bursts0.91.11.41.1-1.1-0.8-1.2
Total sessions with >9 infusions1.82.07.2-0.70.40.32.7
Short access day 1 total inactive lever presses0.91.01.60.9-0.9-0.8-1.3
Short access day 10 total inactive lever presses1.61.85.30.9-0.8-0.6-2.3
Short access day 1 total infusions0.40.41.40.3-0.0-0.41.2
Short access day 10 total infusions0.60.71.9-0.60.60.41.4
Short access total infusions1.11.23.6-0.80.70.41.9
Short access day 1 locomotion1.71.82.7-1.51.01.21.6
Short access day 10 total locomotion0.40.40.90.5-0.9-0.70.3
Short access total locomotion1.11.13.8-0.80.10.31.9
One hour access (0.3 mA shock)1.31.62.01.3-1.4-1.3-0.9
Compulsive drug intake0.40.40.60.7-0.6-0.6-0.8
One hour access (shock baseline)0.10.10.30.4-0.5-0.4-0.0
Social response proportion3.13.34.82.2-2.0-2.1-0.2
Social responses0.20.30.90.5-0.3-0.2-0.9
Social time1.31.74.31.1-0.8-0.8-2.1
Soleus weight0.61.82.3-1.41.51.5-0.8
Bone: stiffness1.21.82.41.6-1.5-1.5-0.4
Tibialis anterior weight0.00.10.4-0.1-0.0-0.00.6
Time to tail flick, vehicle, before self-admin1.31.35.0-0.2-0.4-0.42.2
Time to tail flick, vehicle, after self-admin0.40.41.10.6-0.2-0.3-1.0
Time to tail flick, test, before self-admin0.60.62.3-0.2-0.10.11.5
Time to tail flick, test, after self-admin0.20.30.9-0.2-0.3-0.00.9
Delta time to tail flick, vehicle, before/after SA0.50.51.60.6-0.0-0.1-1.3
Delta time to tail flick, test, before/after SA0.10.10.4-0.2-0.1-0.00.6
Tibia length1.54.35.82.4-2.4-2.3-0.2
Ambulatory time before self-admin0.70.71.11.0-0.8-1.00.2
Ambulatory time after self-admin5.25.77.62.8-2.6-2.5-1.4
Bone: tissue strength3.53.44.52.1-2.1-2.1-0.5
Total heroin consumption1.21.42.21.4-1.3-1.5-0.0
Bone: trabecular number0.10.20.30.4-0.5-0.4-0.5
Bone: trabecular spacing1.31.62.21.5-1.5-1.5-0.1
Bone: trabecular thickness0.40.51.0-0.60.50.51.0
Bone: trabecular tissue density2.02.93.9-2.01.91.80.7
Water consumed over 24 hours0.70.91.20.7-0.9-0.91.1
Number of responses in last shaping day1.51.52.11.4-1.3-1.40.7