Pnoc

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Pnoc 0.04 0.02 2.1e-04 0.02 0.04 0.03 0.03 5.8e-03 1.3e-04 5.9e-04 1.2e-03
2 Liver gene expression Pnoc 0.05 0.03 4.2e-05 0.01 0.01 0.01 0.01 4.3e-02 1.0e-02 5.5e-02 4.1e-02
3 PL gene expression Pnoc 0.15 0.09 4.1e-04 0.01 0.04 0.03 0.02 2.0e-02 2.4e-05 3.6e-04 1.3e-03
4 Brain intron excision ratio chr15_39624993_39628071 0.03 0.02 8.8e-03 0.01 0.01 0.01 0.01 1.3e-02 1.9e-02 3.2e-02 1.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.40.71.40.70.90.11.2
Area under the delay curve1.21.32.4-1.0-1.50.9-1.0
BMI with tail0.41.32.7-0.6-0.91.6-1.2
BMI without tail1.02.04.11.41.22.00.6
Body weight0.52.13.9-2.0-1.80.0-1.1
Weight adjusted by age3.33.75.1-2.3-1.9-2.2-1.2
Bone surface0.10.30.50.10.2-0.70.6
Bone volume0.10.10.40.20.2-0.20.6
Breakpoint value in progressive ratio session0.20.20.60.30.10.40.8
Number of licking bursts0.60.82.60.50.31.60.3
Context. condit. distance diff. score5.26.39.72.92.53.11.0
Locomotion velocity, session 10.10.10.1-0.3-0.3-0.20.3
Locomotion distance, session 10.50.61.6-0.6-0.8-1.2-0.0
Locomotion velocity, session 20.50.61.3-0.6-0.8-1.20.2
Locomotion distance, session 20.91.23.6-0.7-0.7-1.90.5
Locomotion velocity, session 30.60.71.0-0.7-0.60.9-1.0
Locomotion distance, session 30.40.51.7-0.1-0.11.3-0.3
Stereotopy head waving bouts, day 30.40.51.3-0.6-0.3-1.2-0.2
Stereotopy head waving duration, day 31.61.92.7-1.6-1.4-1.0-1.4
Locomotion velocity, session 77.17.89.73.02.93.12.1
Locomotion distance, session 76.78.510.43.23.12.72.5
Stereotopy head waving bouts, day 71.41.62.6-1.6-1.6-0.6-1.0
Stereotopy head waving duration, day 72.42.94.5-2.1-2.0-0.5-1.7
Locomotion velocity, session 80.40.41.40.50.21.2-0.3
Locomotion distance, session 81.01.52.11.51.21.30.9
Degree of sensitization distance7.57.611.03.33.21.42.7
Degree of sensitization stereotypy1.11.21.9-1.3-1.4-0.2-1.0
Conditioned locomotion0.70.81.11.11.00.80.6
Cocaine response after cond. corrected1.61.84.41.30.92.10.1
Cocaine response after cond. not corrected1.21.33.41.10.81.80.4
Cocaine response before conditioning0.60.81.6-0.9-0.6-1.20.7
Saline control response0.30.41.3-0.5-0.5-1.10.0
Bone: connectivity density1.52.44.61.21.9-0.22.1
Bone: cortical apparent density0.71.03.30.60.41.8-0.1
Bone: cortical area0.40.61.1-0.5-1.10.4-1.0
Bone: cortical porosity2.12.33.2-1.8-1.7-1.1-1.2
Bone: cortical porosity2.22.43.1-1.7-1.8-1.3-1.3
Bone: cortical thickness0.61.01.4-0.6-1.21.1-1.1
Bone: cortical thickness1.11.34.60.8-0.12.1-0.0
Bone: cortical tissue density0.81.03.60.60.41.9-0.1
Condit. Reinf. active minus inactive responses0.80.91.6-1.0-0.8-1.2-0.4
Condit. Reinf. active-inactive response ratio0.10.10.2-0.3-0.2-0.3-0.5
Condit. Reinf. active responses0.81.02.3-1.0-0.9-1.50.1
Condit. Reinf. inactive responses0.91.12.5-0.6-0.4-1.61.2
Incentive salience index mean2.12.53.4-1.8-1.7-1.8-0.8
Condit. Reinf. lever presses2.22.94.2-1.9-1.9-2.1-0.5
Condit. Reinf. active minus inactive responses0.10.10.30.30.3-0.60.3
Condit. Reinf. active-inactive response ratio0.10.10.10.30.20.3-0.2
Condit. Reinf. active responses0.20.20.30.50.5-0.40.5
Condit. Reinf. inactive responses0.91.22.21.01.0-0.61.5
Condit. Reinf. lever presses0.81.12.6-1.1-0.8-1.6-0.3
Condit. Reinf. lever reinforcers received0.10.10.20.20.1-0.50.2
Conditioned reinforcement - actives3.43.45.92.42.30.91.4
Conditioned reinforcement - inactives1.82.04.31.01.3-0.92.1
Conditioned locomotion1.51.83.11.81.40.81.2
Patch foraging indifference point 0 sec1.83.08.6-1.3-0.9-2.90.9
Patch foraging indifference point AUC1.82.15.60.80.12.4-1.4
Delay disc. indifference point, 0s delay0.70.81.7-0.2-0.2-1.31.2
Delay disc. indifference point, 16s delay1.11.12.1-0.4-0.91.4-1.1
Delay disc. indifference point, 2s delay0.91.01.4-1.0-1.2-1.2-0.4
Delay disc. indifference point, 24s delay0.80.71.5-0.3-1.01.2-0.7
Delay disc. indifference point, 4s delay1.41.52.6-1.3-1.60.4-1.3
Delay disc. indifference point, 8s delay1.71.72.5-1.2-1.61.1-1.3
Indifference point function ln k1.21.63.8-1.3-0.9-1.90.4
Indifference point function log k1.21.63.8-1.3-0.9-1.90.4
Patch foraging total patch changes 0 sec1.83.07.9-1.5-1.2-2.80.6
Patch foraging total patch changes 12 sec0.10.10.3-0.4-0.5-0.20.0
Patch foraging total patch changes 18 sec0.10.10.30.50.30.30.1
Patch foraging total patch changes 24 sec0.80.91.5-1.0-1.0-1.2-0.5
Patch foraging total patch changes 6 sec0.00.00.0-0.1-0.1-0.00.1
Patch foraging time to switch 0 sec0.50.82.10.60.7-0.31.5
Patch foraging water rate 0 sec0.71.11.6-1.2-1.3-0.0-1.2
Patch foraging water rate 12 sec0.91.42.5-1.1-1.1-1.6-0.8
Patch foraging water rate 18 sec2.83.75.6-2.1-2.20.4-2.4
Patch foraging water rate 24 sec0.10.20.60.1-0.00.3-0.8
Patch foraging water rate 6 sec2.23.24.0-1.9-2.0-1.1-1.9
Seeking ratio, delayed vs. immediate footshock1.11.23.2-0.20.2-1.81.3
Distance traveled before self-admin0.20.30.3-0.4-0.6-0.5-0.5
Distance traveled after self-admin0.20.30.7-0.3-0.50.2-0.8
Extensor digitorum longus weight5.722.338.0-4.7-5.30.9-6.2
Bone: elastic displacement1.11.24.2-0.6-0.5-2.10.3
Bone: elastic work1.92.54.5-1.6-1.6-2.1-0.5
Bone: endosteal estimation0.10.20.8-0.2-0.2-0.9-0.1
Bone: endosteal perimeter0.30.72.7-0.1-0.0-1.60.3
Epididymis fat weight0.30.61.40.70.8-0.01.2
Delta time in closed arm before/after self-admin0.40.40.70.40.6-0.80.7
Delta time in open arm before/after self-admin0.40.40.50.60.70.70.4
Diff in mean of infusions in LGA sessions2.12.34.4-2.1-1.8-1.2-0.8
Delay discount exponential model param1.71.72.91.21.7-1.01.3
Extinction: sum of active levers before priming1.01.01.51.01.00.61.2
Active lever presses in extinction session 60.70.71.01.00.90.60.8
Bone: final force0.40.61.1-0.7-1.00.2-0.9
Bone: final moment0.61.01.6-1.0-1.3-0.2-1.0
Food consumed during 24 hour testing period0.70.80.9-0.9-0.9-0.9-0.9
Glucose0.81.13.80.70.31.9-0.5
Heart weight0.20.20.4-0.4-0.2-0.7-0.5
Delay discount hyperbolic model param1.92.03.71.41.9-0.61.4
Intermittent access intake day 1-15 change0.40.41.00.30.5-1.00.5
Intermittent access intake escalation0.20.20.70.30.3-0.80.2
Intermittent access intake escalation 20.30.31.20.00.2-1.10.1
Intermitt. access day 1 inactive lever presses1.41.52.41.01.5-0.71.6
Intermitt. access day 15 inactive lever presses0.20.20.5-0.6-0.1-0.7-0.2
Intermitt. access escalation Index0.40.30.70.80.60.40.5
Intermittent access day 1 total infusions0.70.82.20.90.41.5-0.3
Intermittent access day 15 total infusions0.70.81.71.31.10.50.3
Intermittent access terminal intake (last 3 days)0.50.61.01.00.60.8-0.5
Intermittent access total infusions1.61.83.11.81.31.50.4
Intermittent access day 1 locomotion0.50.51.60.50.31.20.2
Intermittent access day 15 total locomotion0.30.30.50.70.60.50.2
Intermittent access total locomotion0.20.20.40.50.40.70.3
Intermittent access standard deviation0.70.71.5-0.2-0.3-1.2-1.1
Left kidney weight1.02.94.7-2.2-1.8-0.6-1.8
Right kidney weight1.02.95.7-2.4-1.7-1.7-0.5
Cocaine induced anxiety1.61.94.3-1.2-1.0-2.1-0.8
Post-drug Anxiety0.20.20.6-0.40.2-0.80.4
Baseline Anxiety0.90.92.00.70.80.81.4
Tail length0.20.71.60.40.8-0.61.3
Length with tail0.52.03.4-1.7-1.2-1.90.1
Length without tail2.96.39.9-3.1-2.9-1.8-1.9
Times rat made contact with spout0.30.30.80.50.30.9-0.0
Lifetime Intake1.11.32.61.61.30.90.4
Liver weight, left2.54.07.4-2.0-2.1-0.0-2.7
Liver weight, right1.52.54.8-1.3-1.70.9-2.2
Locomotor activity4.97.710.5-3.2-2.9-3.1-1.5
Locomotor testing distance2.64.412.4-1.8-1.3-3.50.2
Locomotor testing rearing4.36.721.2-1.8-1.0-4.61.2
Locomotion in novel chamber0.30.41.1-0.4-0.51.1-0.2
Locomotion in novel chamber post-restriction0.50.61.8-0.3-0.60.5-1.3
Fecal boli incidents, locomotor time 11.31.43.2-0.9-1.30.1-1.8
Change in fecal boli incidents, locomotor task0.30.30.70.30.7-0.10.9
Time >=10cm from walls, locomotor time 10.20.20.7-0.40.0-0.80.3
Bouts of movement, locomotor time 10.20.20.8-0.1-0.2-0.0-0.9
Total resting periods, locomotor time 10.30.30.60.40.10.6-0.8
Rest time, locomotor task time 10.60.72.40.50.01.6-0.5
Distance moved, locomotor task time 10.30.40.90.10.4-1.00.6
Vertical activity count, locomotor time 11.71.83.5-1.3-1.2-1.9-0.7
Time >=10cm from walls, locomotor time 20.20.20.7-0.5-0.2-0.8-0.1
Bouts of movement, locomotor time 20.70.71.3-0.3-0.61.1-1.1
Total resting periods, locomotor time 21.31.42.8-0.3-0.71.7-1.4
Rest time, locomotor task time 23.33.79.40.0-0.83.1-2.2
Distance moved, locomotor task time 21.31.54.3-0.10.2-2.11.3
Vertical activity count, locomotor time 21.41.64.5-0.9-0.9-2.10.4
Light reinforcement 10.61.11.41.01.01.01.2
Light reinforcement 22.02.75.81.61.52.40.5
Bone: marrow area0.10.20.8-0.1-0.1-0.90.0
Bone: maximum diameter0.30.61.4-0.3-0.90.2-1.2
Bone: maximum force0.81.32.4-1.1-1.6-0.0-1.3
Bone: maximum moment1.01.83.1-1.4-1.8-0.5-1.4
Mean time between licks in bursts2.33.35.91.62.1-0.62.4
Mean num. licks in bursts0.20.20.6-0.1-0.1-0.8-0.3
Cd content in liver0.10.10.40.00.3-0.70.2
Co content in liver0.80.91.8-0.0-0.61.4-1.3
Cu content in liver0.30.40.8-0.5-0.50.4-0.9
Fe content in liver0.60.71.20.61.1-0.61.1
K content in liver0.90.91.21.11.00.81.0
Mg content in liver0.80.91.21.11.00.60.9
Mn content in liver1.72.03.71.51.40.11.9
Na content in liver6.77.010.6-3.3-3.0-2.2-1.9
Rb content in liver0.60.71.51.01.20.30.5
Se content in liver2.02.47.6-0.7-0.3-2.81.2
Sr content in liver0.90.81.60.71.0-0.51.3
Zn content in liver2.62.84.2-2.1-1.8-1.6-1.2
Bone: minimum diameter0.71.31.9-1.0-1.4-1.1-1.1
Time in familiar zone, hab. session 10.50.40.70.80.60.60.6
Time in novel zone, hab. session 11.11.12.1-1.0-1.00.5-1.4
Total zone transitions, hab. session 10.30.51.1-0.7-1.1-0.3-0.4
Total locomotion distance, hab. session 10.20.30.8-0.3-0.5-0.90.4
Locomotion velocity, hab. session 10.60.92.3-0.6-0.7-1.50.6
Time in familiar zone, hab. session 20.80.81.70.90.81.30.2
Time in novel zone, hab. session 20.40.40.8-0.5-0.6-0.9-0.1
Total zone transitions, hab. session 21.21.52.1-1.3-1.5-1.2-0.8
Total locomotion distance, hab. session 20.20.30.5-0.5-0.7-0.7-0.1
Locomotion velocity, hab. session 20.50.71.2-0.9-1.1-0.8-0.4
Novel to familiar place preference ratio0.30.30.90.2-0.0-0.90.5
Novelty place preference0.40.41.20.10.0-1.10.5
Time in novel zone, NPP test0.40.41.4-0.1-0.1-1.20.4
Total zone transitions, NPP test0.20.20.6-0.3-0.3-0.80.4
Total locomotion distance, NPP test1.31.74.10.81.0-1.12.0
Locomotion velocity, NPP test1.11.63.90.91.0-0.92.0
Intraocular pressure0.91.21.50.91.2-1.01.2
Delta distance traveled before/after self-admin0.30.30.6-0.2-0.40.7-0.8
Delta ambulatory time before/after self-admin0.30.30.7-0.2-0.50.3-0.9
Parametrial fat weight2.75.27.32.72.50.72.6
Pavlov. Cond. lever latency1.01.22.31.11.11.50.2
Pavlov. Cond. magazine entry latency0.40.50.8-0.9-0.6-0.9-0.4
Pavlov. Cond. change in total contacts3.23.45.0-2.1-2.2-1.5-1.5
Pavlov. Cond. index score1.41.83.0-1.7-1.6-1.1-0.7
Pavlov. Cond. latency score1.21.62.4-1.6-1.4-1.3-0.5
Pavlov. Cond. lever contacts1.31.52.1-1.5-1.3-1.4-0.5
Pavlov. Cond. magazine entry number1.21.52.31.51.40.81.0
Pavlov. Cond. intertrial magazine entries0.30.30.8-0.5-0.4-0.90.3
Pavlov. Cond. lever-magazine prob. diff.1.72.23.6-1.9-1.8-1.0-1.0
Pavlov. Cond. response bias1.51.82.8-1.7-1.5-0.8-1.2
Pavlov. Cond. lever latency2.33.14.32.11.81.51.7
Pavlov. Cond. magazine entry latency1.01.22.0-1.4-1.3-0.9-0.6
Pavlov. Cond. change in total contacts4.05.57.6-2.8-2.6-1.3-2.5
Pavlov. Cond. index score2.73.55.2-2.3-2.0-1.5-1.5
Pavlov. Cond. latency score2.73.35.0-2.2-1.9-1.7-1.3
Pavlov. Cond. lever contacts2.53.54.7-2.2-1.9-1.8-1.5
Pavlov. Cond. magazine entry number0.50.60.90.90.90.80.2
Pavlov. Cond. intertrial magazine entries5.37.010.32.83.1-0.43.2
Pavlov. Cond. lever-magazine prob. diff.2.53.24.8-2.2-2.0-1.3-1.5
Pavlov. Cond. response bias2.73.75.1-2.3-2.1-1.7-1.5
Time in closed arm before self-admin1.11.21.8-1.4-1.20.6-1.0
Time in closed arm after self-admin0.40.40.6-0.8-0.5-0.70.1
Time in open arm before self-admin0.10.10.20.40.2-0.50.0
Time in open arm after self-admin0.60.61.00.91.00.70.5
Bone: periosteal estimation0.10.20.4-0.3-0.6-0.3-0.5
Bone: periosteal perimeter0.10.20.5-0.2-0.4-0.70.0
Bone: post-yield work1.72.36.61.50.42.6-0.6
Progressive ratio test 1 active lever presses1.71.74.71.20.72.2-0.6
Progressive ratio test 1 breakpoint1.81.95.21.30.72.3-0.5
Progressive ratio test 1 inactive lever presses0.80.91.31.11.10.51.0
Progressive ratio test 2 active lever presses1.21.32.41.51.21.00.3
Progressive ratio test 2 breakpoint0.70.81.61.31.00.90.2
Progressive ratio test 2 inactive lever presses0.60.71.21.11.1-0.00.6
Incentive Sensitization - Responses0.40.41.10.30.4-1.10.6
Incentive Sensitization - Breakpoint0.50.51.20.30.4-1.10.7
Sum of active levers in priming session hrs 5-61.91.92.81.51.31.70.8
Progressive ratio1.01.21.8-1.4-1.20.2-1.2
Food seeking constrained by brief footshock1.41.73.51.31.21.90.5
Seeking ratio, punishment vs. effort0.81.01.71.31.10.70.7
Retroperitoneal fat weight0.61.93.01.71.50.81.3
Reaction time number correct0.20.30.50.60.70.30.3
Reaction time mean minus median0.60.81.3-1.2-0.9-1.0-0.4
Reaction time mean minus median AUC0.20.30.6-0.8-0.5-0.60.0
Reaction time num false alarms0.20.30.7-0.9-0.7-0.10.3
Reaction time num false alarms AUC0.30.40.9-0.9-0.90.0-0.0
Reaction time trials correct on left0.20.30.50.60.70.30.3
Reaction time trials on left0.20.30.60.70.80.30.4
Reaction time mean0.20.30.5-0.5-0.1-0.7-0.6
Reaction time mean AUC0.50.61.0-0.8-0.4-1.0-0.8
Median of all reaction times0.10.20.4-0.20.2-0.7-0.4
Reaction time omissions1.11.52.51.11.5-0.21.6
Reaction time false alarm rate0.30.40.8-0.9-0.90.2-0.1
Reaction time premature initiation rate0.20.30.6-0.5-0.6-0.2-0.8
Reaction time premature initiations0.10.10.4-0.1-0.10.1-0.6
Std. dev. reaction times0.10.20.2-0.4-0.2-0.5-0.5
Reaction time trials completed0.20.30.60.70.80.30.4
Reaction time trials AUC0.20.30.60.70.80.20.3
Run reversals in cocaine runway, females0.80.80.91.00.90.90.6
Run reversals in cocaine runway, males3.93.87.2-1.8-2.20.1-2.7
Latency to leave start box in cocaine runway0.30.41.20.10.1-1.1-0.5
Latency to leave start box in cocaine runway, F0.80.91.6-0.7-0.7-1.3-1.0
Latency to leave start box in cocaine runway, M0.50.51.00.71.0-0.40.6
Std. dev. time between licks in bursts2.02.45.40.30.7-2.31.9
Total sessions with >9 infusions1.11.21.81.21.30.71.0
Short access day 1 total inactive lever presses0.91.01.91.00.71.4-0.7
Short access day 10 total inactive lever presses1.01.11.61.11.20.41.3
Short access day 1 total infusions1.51.63.01.71.60.90.4
Short access day 10 total infusions0.10.20.30.1-0.40.4-0.5
Short access total infusions0.20.20.50.70.50.40.0
Short access day 1 locomotion0.20.20.7-0.4-0.2-0.80.1
Short access day 10 total locomotion0.20.20.6-0.3-0.00.20.8
Short access total locomotion0.10.10.5-0.20.10.10.7
One hour access (0.3 mA shock)0.40.41.11.00.60.50.1
Compulsive drug intake0.20.30.60.30.20.50.8
One hour access (shock baseline)0.30.40.91.00.60.3-0.3
Social response proportion1.92.03.31.71.80.61.2
Social responses3.03.86.61.82.1-1.02.6
Social time0.40.51.4-0.7-0.2-1.20.4
Soleus weight0.20.61.0-0.3-0.61.0-0.9
Bone: stiffness0.40.60.9-0.6-0.80.6-0.9
Tibialis anterior weight5.017.125.2-4.4-4.80.8-5.0
Time to tail flick, vehicle, before self-admin0.30.30.6-0.8-0.70.0-0.0
Time to tail flick, vehicle, after self-admin1.01.12.5-0.7-0.90.8-1.6
Time to tail flick, test, before self-admin0.20.20.4-0.4-0.40.6-0.5
Time to tail flick, test, after self-admin4.85.07.72.52.81.32.1
Delta time to tail flick, vehicle, before/after SA0.50.51.10.50.40.7-1.0
Delta time to tail flick, test, before/after SA4.94.46.62.52.61.11.9
Tibia length1.43.98.0-2.3-1.5-2.80.3
Ambulatory time before self-admin0.10.10.2-0.2-0.4-0.3-0.4
Ambulatory time after self-admin0.91.01.8-0.9-1.2-0.1-1.3
Bone: tissue strength0.10.10.3-0.2-0.1-0.5-0.0
Total heroin consumption0.91.01.6-1.1-1.3-0.4-1.1
Bone: trabecular number0.81.22.41.01.30.01.6
Bone: trabecular spacing1.01.32.2-1.1-1.50.4-1.4
Bone: trabecular thickness0.10.10.1-0.3-0.40.10.1
Bone: trabecular tissue density1.01.42.1-1.4-1.40.1-1.3
Water consumed over 24 hours1.11.32.1-1.2-1.30.0-1.4
Number of responses in last shaping day0.90.91.6-1.0-1.0-1.2-0.4