Pnliprp2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Pnliprp2 0.1 0.05 9.7e-10 0.12 0.13 0.13 0.13 1.2e-09 8.4e-11 2.4e-10 1.2e-10
2 Brain gene expression Pnliprp2 0.1 0.05 6.4e-08 0.09 0.09 0.09 0.09 8.0e-09 1.2e-08 1.6e-08 1.4e-08
3 BLA gene expression Pnliprp2 0.2 0.13 1.5e-07 0.09 0.12 0.1 0.12 1.7e-05 5.9e-07 3.7e-06 3.7e-07
4 NAcc gene expression Pnliprp2 0.03 0.02 3.7e-05 0.01 0.03 0.02 0.02 1.8e-03 7.5e-05 8.1e-04 9.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.54.45.02.21.92.22.0
Area under the delay curve0.20.20.30.40.4-0.3-0.5
BMI with tail2.37.913.43.73.32.31.3
BMI without tail1.13.46.12.52.11.50.8
Body weight3.716.324.85.04.53.62.6
Weight adjusted by age0.10.20.30.60.3-0.0-0.5
Bone surface1.52.73.41.61.51.81.6
Bone volume1.52.83.51.91.81.71.2
Breakpoint value in progressive ratio session1.41.72.71.71.51.00.8
Number of licking bursts1.32.12.91.21.01.71.7
Context. condit. distance diff. score0.30.41.0-0.7-1.0-0.20.1
Locomotion velocity, session 10.10.10.2-0.3-0.50.0-0.1
Locomotion distance, session 11.21.52.2-1.4-1.5-1.0-0.9
Locomotion velocity, session 22.02.33.3-1.8-1.8-1.3-1.0
Locomotion distance, session 20.81.11.5-1.2-1.2-0.8-0.8
Locomotion velocity, session 30.70.81.2-1.1-0.9-0.8-0.6
Locomotion distance, session 32.02.23.0-1.7-1.7-1.3-1.1
Stereotopy head waving bouts, day 30.20.20.3-0.4-0.2-0.5-0.5
Stereotopy head waving duration, day 30.00.00.10.20.20.10.1
Locomotion velocity, session 70.00.00.1-0.2-0.30.0-0.1
Locomotion distance, session 70.40.60.8-0.9-0.9-0.6-0.6
Stereotopy head waving bouts, day 70.00.00.10.20.40.0-0.0
Stereotopy head waving duration, day 70.50.51.10.91.10.40.2
Locomotion velocity, session 80.40.40.8-0.4-0.80.40.9
Locomotion distance, session 81.01.43.3-1.5-1.8-0.30.3
Degree of sensitization distance0.90.91.21.11.00.90.8
Degree of sensitization stereotypy0.60.60.90.90.90.70.5
Conditioned locomotion0.00.00.10.10.2-0.1-0.3
Cocaine response after cond. corrected5.66.78.3-2.9-2.8-2.5-2.1
Cocaine response after cond. not corrected4.24.96.3-2.5-2.5-2.1-1.7
Cocaine response before conditioning1.31.51.81.21.21.21.3
Saline control response0.70.91.1-1.0-1.1-0.9-0.9
Bone: connectivity density1.62.43.21.51.21.81.7
Bone: cortical apparent density4.25.77.2-2.7-2.7-2.1-2.0
Bone: cortical area2.53.84.82.22.02.11.4
Bone: cortical porosity0.40.50.60.70.80.60.6
Bone: cortical porosity1.61.82.21.41.51.21.2
Bone: cortical thickness0.40.61.10.80.71.10.7
Bone: cortical thickness0.10.10.2-0.1-0.2-0.2-0.5
Bone: cortical tissue density4.15.67.2-2.7-2.7-2.1-1.9
Condit. Reinf. active minus inactive responses0.20.20.6-0.2-0.30.40.8
Condit. Reinf. active-inactive response ratio0.10.20.50.0-0.00.40.7
Condit. Reinf. active responses0.60.81.70.40.31.11.3
Condit. Reinf. inactive responses0.91.11.80.80.71.31.3
Incentive salience index mean0.20.20.4-0.7-0.60.10.5
Condit. Reinf. lever presses0.20.20.5-0.7-0.5-0.30.0
Condit. Reinf. active minus inactive responses2.02.63.41.81.61.71.3
Condit. Reinf. active-inactive response ratio0.91.01.51.21.01.10.7
Condit. Reinf. active responses2.94.05.22.32.02.01.6
Condit. Reinf. inactive responses1.11.51.91.31.41.11.0
Condit. Reinf. lever presses0.81.11.61.31.01.10.8
Condit. Reinf. lever reinforcers received2.33.23.92.01.71.91.6
Conditioned reinforcement - actives1.32.22.7-1.6-1.6-1.4-1.3
Conditioned reinforcement - inactives0.20.20.40.60.50.40.3
Conditioned locomotion2.63.44.4-2.0-2.1-1.6-1.5
Patch foraging indifference point 0 sec0.30.61.01.00.80.70.4
Patch foraging indifference point AUC0.50.71.21.10.90.70.4
Delay disc. indifference point, 0s delay0.40.50.7-0.5-0.6-0.8-0.8
Delay disc. indifference point, 16s delay0.10.10.20.30.4-0.2-0.3
Delay disc. indifference point, 2s delay1.41.52.3-0.9-0.8-1.5-1.5
Delay disc. indifference point, 24s delay0.50.61.00.91.00.60.4
Delay disc. indifference point, 4s delay0.20.20.30.10.1-0.5-0.6
Delay disc. indifference point, 8s delay0.20.20.50.60.3-0.1-0.7
Indifference point function ln k0.10.20.4-0.6-0.6-0.2-0.0
Indifference point function log k0.10.20.4-0.6-0.6-0.2-0.0
Patch foraging total patch changes 0 sec0.50.91.51.21.00.90.6
Patch foraging total patch changes 12 sec1.01.31.91.41.21.10.8
Patch foraging total patch changes 18 sec1.82.84.22.11.91.60.9
Patch foraging total patch changes 24 sec1.01.82.91.71.51.10.8
Patch foraging total patch changes 6 sec1.42.13.21.81.51.41.0
Patch foraging time to switch 0 sec0.20.50.7-0.8-0.4-0.8-0.7
Patch foraging water rate 0 sec0.20.40.60.80.50.70.6
Patch foraging water rate 12 sec1.12.32.81.61.61.71.2
Patch foraging water rate 18 sec0.20.30.3-0.5-0.6-0.5-0.6
Patch foraging water rate 24 sec0.20.30.7-0.3-0.5-0.4-0.8
Patch foraging water rate 6 sec0.00.10.20.0-0.2-0.2-0.4
Seeking ratio, delayed vs. immediate footshock1.11.42.4-1.4-1.5-1.0-0.4
Distance traveled before self-admin5.37.07.8-2.8-2.6-2.6-2.5
Distance traveled after self-admin3.44.14.5-2.0-2.1-2.1-1.9
Extensor digitorum longus weight0.52.14.01.82.01.00.6
Bone: elastic displacement0.40.51.0-0.5-0.2-0.9-1.0
Bone: elastic work1.21.62.4-1.1-0.9-1.4-1.6
Bone: endosteal estimation0.61.22.01.41.20.90.7
Bone: endosteal perimeter0.61.22.31.51.40.70.0
Epididymis fat weight8.830.040.06.36.35.13.8
Delta time in closed arm before/after self-admin0.90.81.2-1.1-1.0-0.9-0.6
Delta time in open arm before/after self-admin4.64.65.52.32.12.21.8
Diff in mean of infusions in LGA sessions0.50.60.90.90.90.60.8
Delay discount exponential model param0.20.20.4-0.4-0.40.30.6
Extinction: sum of active levers before priming0.60.71.11.11.00.50.5
Active lever presses in extinction session 60.10.10.40.50.60.00.1
Bone: final force0.61.01.31.10.91.10.8
Bone: final moment0.71.11.51.21.01.10.8
Food consumed during 24 hour testing period0.10.10.2-0.4-0.40.10.4
Glucose0.91.42.41.51.50.80.4
Heart weight1.93.03.41.81.71.81.5
Delay discount hyperbolic model param0.20.20.5-0.3-0.30.50.7
Intermittent access intake day 1-15 change0.40.81.9-0.5-0.2-1.1-1.4
Intermittent access intake escalation0.20.41.1-0.30.1-0.8-1.0
Intermittent access intake escalation 20.30.40.7-0.5-0.3-0.7-0.8
Intermitt. access day 1 inactive lever presses1.14.26.02.42.31.91.5
Intermitt. access day 15 inactive lever presses0.40.91.61.01.30.80.4
Intermitt. access escalation Index0.00.00.00.0-0.10.10.2
Intermittent access day 1 total infusions0.10.20.4-0.3-0.1-0.4-0.7
Intermittent access day 15 total infusions0.40.61.5-0.4-0.0-0.9-1.2
Intermittent access terminal intake (last 3 days)0.30.40.9-0.20.1-0.7-0.9
Intermittent access total infusions0.20.30.7-0.20.0-0.5-0.9
Intermittent access day 1 locomotion2.12.74.2-1.4-1.2-1.8-2.0
Intermittent access day 15 total locomotion0.20.40.70.70.9-0.2-0.6
Intermittent access total locomotion1.82.23.8-1.2-0.8-1.7-2.0
Intermittent access standard deviation0.20.40.70.80.8-0.1-0.5
Left kidney weight0.00.20.40.60.20.50.2
Right kidney weight0.00.10.30.3-0.20.2-0.6
Cocaine induced anxiety1.41.93.3-1.8-1.6-1.2-0.6
Post-drug Anxiety0.20.20.60.10.00.60.8
Baseline Anxiety4.24.85.82.42.42.21.7
Tail length0.20.60.90.90.90.60.5
Length with tail0.93.84.92.22.01.91.7
Length without tail2.78.610.63.33.12.82.5
Times rat made contact with spout0.00.00.0-0.10.0-0.00.0
Lifetime Intake0.20.30.7-0.4-0.2-0.6-0.8
Liver weight, left1.52.54.02.01.91.30.8
Liver weight, right0.10.10.40.10.1-0.4-0.6
Locomotor activity0.10.20.3-0.2-0.2-0.6-0.6
Locomotor testing distance1.22.12.5-1.4-1.4-1.5-1.6
Locomotor testing rearing0.81.62.8-1.0-1.0-1.3-1.7
Locomotion in novel chamber1.51.92.7-1.6-1.6-1.3-0.9
Locomotion in novel chamber post-restriction1.52.43.4-1.9-1.6-1.6-1.2
Fecal boli incidents, locomotor time 10.00.10.10.30.10.40.0
Change in fecal boli incidents, locomotor task0.30.30.80.00.10.60.9
Time >=10cm from walls, locomotor time 10.20.20.5-0.1-0.10.30.7
Bouts of movement, locomotor time 10.80.91.51.21.20.70.2
Total resting periods, locomotor time 10.30.30.60.80.70.4-0.0
Rest time, locomotor task time 10.40.50.8-0.8-0.9-0.5-0.7
Distance moved, locomotor task time 10.00.10.10.10.2-0.4-0.2
Vertical activity count, locomotor time 10.10.20.5-0.5-0.3-0.7-0.3
Time >=10cm from walls, locomotor time 20.10.20.60.0-0.00.50.7
Bouts of movement, locomotor time 20.10.20.4-0.4-0.2-0.5-0.6
Total resting periods, locomotor time 20.20.30.7-0.3-0.2-0.7-0.8
Rest time, locomotor task time 20.40.51.0-0.5-0.5-0.7-1.0
Distance moved, locomotor task time 20.00.00.10.0-0.00.20.3
Vertical activity count, locomotor time 20.00.10.2-0.0-0.00.20.4
Light reinforcement 10.20.41.0-1.0-0.5-0.5-0.4
Light reinforcement 20.50.71.6-1.3-1.0-0.6-0.3
Bone: marrow area0.61.32.01.41.21.00.8
Bone: maximum diameter2.75.17.52.72.62.11.3
Bone: maximum force0.50.91.21.00.71.10.9
Bone: maximum moment0.61.11.41.10.81.21.0
Mean time between licks in bursts0.71.82.51.31.21.41.6
Mean num. licks in bursts1.82.83.8-1.5-1.2-1.9-1.9
Cd content in liver3.23.65.4-2.2-2.3-1.7-1.1
Co content in liver1.21.42.3-1.4-1.5-0.9-0.8
Cu content in liver0.60.71.2-0.9-1.1-0.7-0.7
Fe content in liver3.03.63.91.91.71.92.0
K content in liver0.20.20.4-0.2-0.2-0.4-0.6
Mg content in liver1.01.02.1-0.6-0.6-1.1-1.5
Mn content in liver0.20.20.3-0.2-0.4-0.4-0.6
Na content in liver0.30.30.7-0.10.1-0.7-0.8
Rb content in liver0.00.10.10.30.40.10.0
Se content in liver0.10.10.20.0-0.30.20.5
Sr content in liver2.82.43.1-1.6-1.6-1.8-1.2
Zn content in liver3.64.05.1-1.9-1.8-2.3-2.0
Bone: minimum diameter1.42.53.51.91.71.61.1
Time in familiar zone, hab. session 10.60.60.9-0.6-0.5-0.9-0.9
Time in novel zone, hab. session 11.81.82.21.31.21.51.3
Total zone transitions, hab. session 10.20.30.7-0.4-0.3-0.4-0.8
Total locomotion distance, hab. session 10.60.81.50.60.41.11.2
Locomotion velocity, hab. session 10.40.51.10.30.20.91.1
Time in familiar zone, hab. session 22.02.22.41.61.51.41.3
Time in novel zone, hab. session 21.61.61.8-1.3-1.3-1.3-1.2
Total zone transitions, hab. session 20.30.41.0-0.4-0.3-0.7-1.0
Total locomotion distance, hab. session 20.00.00.10.1-0.00.20.2
Locomotion velocity, hab. session 20.00.00.00.1-0.00.00.0
Novel to familiar place preference ratio1.41.52.31.00.81.51.5
Novelty place preference1.11.21.70.90.71.31.3
Time in novel zone, NPP test2.22.33.11.41.21.81.6
Total zone transitions, NPP test0.10.10.2-0.3-0.2-0.3-0.4
Total locomotion distance, NPP test0.10.20.4-0.1-0.30.40.6
Locomotion velocity, NPP test0.20.30.7-0.7-0.9-0.00.3
Intraocular pressure1.82.63.61.91.71.61.3
Delta distance traveled before/after self-admin0.10.10.10.20.1-0.3-0.3
Delta ambulatory time before/after self-admin0.10.20.40.60.50.10.1
Parametrial fat weight8.018.726.15.05.14.12.5
Pavlov. Cond. lever latency0.30.30.60.80.50.50.4
Pavlov. Cond. magazine entry latency0.00.00.0-0.10.2-0.00.0
Pavlov. Cond. change in total contacts0.00.00.1-0.2-0.0-0.1-0.2
Pavlov. Cond. index score0.00.00.0-0.20.1-0.2-0.2
Pavlov. Cond. latency score0.00.10.1-0.3-0.0-0.2-0.3
Pavlov. Cond. lever contacts0.10.10.1-0.3-0.1-0.3-0.3
Pavlov. Cond. magazine entry number0.00.10.10.0-0.20.20.3
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.2-0.30.20.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.10.2-0.1-0.1
Pavlov. Cond. response bias0.10.10.2-0.4-0.1-0.4-0.4
Pavlov. Cond. lever latency1.52.12.5-1.6-1.3-1.6-1.3
Pavlov. Cond. magazine entry latency0.70.91.31.11.10.80.5
Pavlov. Cond. change in total contacts0.81.31.81.41.11.20.9
Pavlov. Cond. index score1.31.72.31.51.31.41.0
Pavlov. Cond. latency score1.21.52.11.41.31.30.9
Pavlov. Cond. lever contacts0.81.11.41.20.91.20.9
Pavlov. Cond. magazine entry number0.60.71.0-1.0-0.9-0.8-0.5
Pavlov. Cond. intertrial magazine entries0.00.00.00.10.10.10.0
Pavlov. Cond. lever-magazine prob. diff.0.91.21.71.31.11.20.8
Pavlov. Cond. response bias1.72.32.81.71.41.71.4
Time in closed arm before self-admin0.20.30.5-0.4-0.5-0.6-0.7
Time in closed arm after self-admin2.62.83.4-1.7-1.6-1.8-1.5
Time in open arm before self-admin0.20.20.3-0.6-0.4-0.20.4
Time in open arm after self-admin2.42.63.21.61.51.81.6
Bone: periosteal estimation1.32.73.92.01.71.61.2
Bone: periosteal perimeter1.72.94.92.22.11.40.4
Bone: post-yield work1.82.64.11.21.11.92.0
Progressive ratio test 1 active lever presses1.01.22.0-0.8-0.8-1.2-1.4
Progressive ratio test 1 breakpoint1.01.22.0-0.8-0.8-1.2-1.4
Progressive ratio test 1 inactive lever presses0.10.10.30.50.30.20.1
Progressive ratio test 2 active lever presses0.30.30.9-0.0-0.0-0.6-1.0
Progressive ratio test 2 breakpoint0.20.30.80.10.1-0.5-0.9
Progressive ratio test 2 inactive lever presses0.30.50.60.80.70.70.5
Incentive Sensitization - Responses0.10.20.40.60.5-0.0-0.3
Incentive Sensitization - Breakpoint0.20.30.60.80.60.1-0.2
Sum of active levers in priming session hrs 5-60.70.60.91.01.00.60.5
Progressive ratio0.10.10.3-0.4-0.5-0.10.3
Food seeking constrained by brief footshock0.00.00.2-0.2-0.4-0.10.1
Seeking ratio, punishment vs. effort0.30.51.1-0.4-0.4-0.7-1.0
Retroperitoneal fat weight8.436.048.87.06.85.84.1
Reaction time number correct0.20.30.60.60.80.0-0.5
Reaction time mean minus median0.10.20.50.40.5-0.2-0.7
Reaction time mean minus median AUC0.61.43.7-0.5-0.3-1.3-1.9
Reaction time num false alarms0.20.30.6-0.7-0.8-0.4-0.2
Reaction time num false alarms AUC0.40.60.9-0.9-1.0-0.7-0.6
Reaction time trials correct on left0.20.30.60.60.80.0-0.5
Reaction time trials on left0.20.40.70.70.80.0-0.5
Reaction time mean0.71.12.6-0.4-0.1-1.2-1.6
Reaction time mean AUC0.91.43.2-0.5-0.2-1.4-1.8
Median of all reaction times1.21.73.4-0.8-0.5-1.6-1.8
Reaction time omissions0.71.12.41.31.50.4-0.0
Reaction time false alarm rate0.30.51.0-0.9-1.0-0.30.1
Reaction time premature initiation rate0.40.60.9-0.8-0.9-0.5-0.7
Reaction time premature initiations0.20.40.9-0.4-0.5-0.5-1.0
Std. dev. reaction times0.20.40.80.60.7-0.2-0.9
Reaction time trials completed0.20.40.70.70.80.0-0.5
Reaction time trials AUC0.20.30.60.70.80.0-0.5
Run reversals in cocaine runway, females0.10.10.20.50.10.00.1
Run reversals in cocaine runway, males0.90.91.3-1.2-0.7-1.0-1.0
Latency to leave start box in cocaine runway0.10.10.30.1-0.1-0.3-0.6
Latency to leave start box in cocaine runway, F0.00.00.10.40.20.1-0.0
Latency to leave start box in cocaine runway, M0.50.51.0-0.3-0.6-0.8-1.0
Std. dev. time between licks in bursts0.60.82.00.40.21.11.4
Total sessions with >9 infusions0.40.50.7-0.6-0.7-0.7-0.8
Short access day 1 total inactive lever presses0.60.71.70.60.10.91.3
Short access day 10 total inactive lever presses0.00.10.20.40.20.1-0.0
Short access day 1 total infusions0.30.40.6-0.6-0.6-0.7-0.7
Short access day 10 total infusions1.92.42.8-1.6-1.7-1.5-1.5
Short access total infusions0.81.01.2-1.1-1.0-0.9-1.0
Short access day 1 locomotion0.50.61.0-0.4-0.6-1.0-1.0
Short access day 10 total locomotion1.11.93.4-1.1-1.0-1.5-1.8
Short access total locomotion3.23.84.9-1.7-1.8-2.0-2.2
One hour access (0.3 mA shock)0.80.91.61.21.30.70.5
Compulsive drug intake1.11.31.51.21.21.01.1
One hour access (shock baseline)0.20.20.5-0.3-0.3-0.5-0.7
Social response proportion0.91.11.3-0.9-0.9-1.2-1.2
Social responses0.50.61.01.01.00.60.2
Social time1.01.42.9-0.7-0.5-1.4-1.7
Soleus weight0.82.46.3-0.20.0-1.8-2.5
Bone: stiffness0.71.11.61.00.81.31.1
Tibialis anterior weight0.31.02.41.31.60.3-0.1
Time to tail flick, vehicle, before self-admin0.30.30.60.40.30.70.7
Time to tail flick, vehicle, after self-admin0.00.10.10.30.30.20.3
Time to tail flick, test, before self-admin4.64.85.4-2.2-2.3-2.1-2.2
Time to tail flick, test, after self-admin0.91.01.21.00.91.10.9
Delta time to tail flick, vehicle, before/after SA0.50.50.90.90.90.30.3
Delta time to tail flick, test, before/after SA2.32.32.71.51.51.61.5
Tibia length0.00.00.0-0.0-0.10.0-0.2
Ambulatory time before self-admin2.94.45.1-2.3-2.1-2.0-2.0
Ambulatory time after self-admin2.32.83.2-1.6-1.6-1.8-1.7
Bone: tissue strength0.10.10.10.20.20.20.4
Total heroin consumption1.61.93.01.71.61.20.8
Bone: trabecular number2.94.85.32.21.92.32.2
Bone: trabecular spacing0.10.10.3-0.5-0.3-0.3-0.3
Bone: trabecular thickness1.82.33.82.01.71.20.9
Bone: trabecular tissue density2.03.03.7-1.5-1.5-1.9-1.9
Water consumed over 24 hours0.30.40.5-0.7-0.6-0.6-0.6
Number of responses in last shaping day0.50.60.8-0.7-0.6-0.9-0.9