Plekhs1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Plekhs1 0.03 0.02 1.4e-03 0.04 0.02 0.01 0.03 5.9e-05 2.7e-03 1.4e-02 4.6e-04
2 Liver mRNA stability Plekhs1 0.07 0.06 1.5e-04 0.03 0.04 0.04 0.03 1.9e-04 8.6e-05 7.0e-05 1.9e-04
3 Eye intron excision ratio chr1_255507441_255507550 0.57 0.17 8.4e-04 0.17 0.12 0.22 0.15 1.5e-03 6.5e-03 2.6e-04 2.6e-03
4 Liver gene expression Plekhs1 0.12 0.06 5.3e-12 0.12 0.09 0.1 0.11 2.4e-13 2.2e-10 3.3e-11 1.6e-12

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.04.1-2.00.5-1.8-0.7
Area under the delay curve0.50.50.8-0.90.6-0.80.4
BMI with tail6.320.444.3-6.74.3-2.73.3
BMI without tail2.85.714.6-3.82.1-1.31.4
Body weight6.928.963.7-8.05.0-3.24.1
Weight adjusted by age5.76.59.0-2.73.0-2.02.3
Bone surface0.50.92.3-1.50.3-1.0-0.3
Bone volume1.72.87.4-2.71.1-1.60.0
Breakpoint value in progressive ratio session0.30.40.5-0.7-0.7-0.1-0.7
Number of licking bursts0.40.41.2-1.10.1-0.6-0.3
Context. condit. distance diff. score1.41.73.90.7-1.42.0-0.6
Locomotion velocity, session 10.40.51.41.20.0-0.7-0.2
Locomotion distance, session 10.70.81.60.51.20.31.3
Locomotion velocity, session 20.70.81.50.60.71.01.2
Locomotion distance, session 21.92.64.1-1.62.00.12.0
Locomotion velocity, session 30.70.81.70.01.10.71.3
Locomotion distance, session 31.21.32.4-0.11.01.51.4
Stereotopy head waving bouts, day 30.20.20.3-0.00.6-0.50.5
Stereotopy head waving duration, day 30.40.51.10.9-0.2-1.0-0.4
Locomotion velocity, session 70.10.10.3-0.50.0-0.5-0.1
Locomotion distance, session 70.20.20.40.0-0.60.7-0.1
Stereotopy head waving bouts, day 70.10.10.4-0.30.0-0.60.0
Stereotopy head waving duration, day 70.81.02.4-0.90.7-1.60.4
Locomotion velocity, session 82.12.53.31.3-1.81.8-1.3
Locomotion distance, session 81.01.45.10.3-0.62.30.2
Degree of sensitization distance1.81.83.60.4-1.9-0.3-1.8
Degree of sensitization stereotypy0.20.20.5-0.5-0.2-0.7-0.4
Conditioned locomotion0.10.10.30.5-0.10.30.1
Cocaine response after cond. corrected1.21.32.81.5-0.31.70.4
Cocaine response after cond. not corrected1.51.63.81.9-0.81.5-0.2
Cocaine response before conditioning0.81.01.60.6-1.2-0.6-1.3
Saline control response0.30.40.60.80.6-0.20.7
Bone: connectivity density0.40.61.3-0.1-0.8-0.6-1.2
Bone: cortical apparent density1.52.03.01.20.91.71.7
Bone: cortical area7.811.721.5-4.63.5-2.82.3
Bone: cortical porosity0.20.20.3-0.5-0.2-0.4-0.6
Bone: cortical porosity0.40.40.8-0.9-0.4-0.3-0.8
Bone: cortical thickness4.26.810.7-3.32.9-1.72.3
Bone: cortical thickness1.92.33.9-2.01.60.01.6
Bone: cortical tissue density1.62.13.51.30.71.91.5
Condit. Reinf. active minus inactive responses0.10.20.40.10.60.30.4
Condit. Reinf. active-inactive response ratio0.10.10.20.40.20.2-0.3
Condit. Reinf. active responses0.91.12.1-0.61.5-1.10.9
Condit. Reinf. inactive responses1.82.24.5-0.81.5-2.11.0
Incentive salience index mean0.20.20.40.60.60.20.4
Condit. Reinf. lever presses0.20.30.50.70.6-0.40.2
Condit. Reinf. active minus inactive responses2.63.210.6-0.71.3-3.2-0.2
Condit. Reinf. active-inactive response ratio1.21.24.3-0.10.3-2.1-0.8
Condit. Reinf. active responses3.65.014.2-1.41.9-3.80.4
Condit. Reinf. inactive responses1.51.83.8-1.01.3-2.00.8
Condit. Reinf. lever presses0.60.81.8-1.00.6-1.4-0.1
Condit. Reinf. lever reinforcers received2.83.911.2-1.21.7-3.40.3
Conditioned reinforcement - actives0.70.71.60.41.00.41.3
Conditioned reinforcement - inactives0.80.91.2-0.81.1-0.61.1
Conditioned locomotion0.40.50.80.70.70.60.9
Patch foraging indifference point 0 sec2.94.77.1-2.71.8-2.61.5
Patch foraging indifference point AUC1.01.24.2-0.40.5-2.1-0.2
Delay disc. indifference point, 0s delay0.70.81.3-1.20.8-0.01.2
Delay disc. indifference point, 16s delay0.10.10.2-0.0-0.2-0.4-0.3
Delay disc. indifference point, 2s delay0.20.30.8-0.2-0.40.9-0.0
Delay disc. indifference point, 24s delay0.80.82.1-0.7-0.2-1.4-0.7
Delay disc. indifference point, 4s delay0.20.20.3-0.0-0.50.6-0.3
Delay disc. indifference point, 8s delay4.24.36.9-1.92.2-2.61.4
Indifference point function ln k0.10.10.50.2-0.10.70.0
Indifference point function log k0.10.10.50.2-0.10.70.0
Patch foraging total patch changes 0 sec2.94.67.0-2.61.7-2.61.3
Patch foraging total patch changes 12 sec1.11.53.8-1.40.4-1.9-0.1
Patch foraging total patch changes 18 sec3.54.510.6-2.11.5-3.30.8
Patch foraging total patch changes 24 sec2.53.18.6-1.60.9-2.90.3
Patch foraging total patch changes 6 sec4.56.79.7-3.02.3-3.11.8
Patch foraging time to switch 0 sec0.50.71.50.9-0.71.2-0.2
Patch foraging water rate 0 sec0.40.71.1-1.00.8-1.00.4
Patch foraging water rate 12 sec1.01.65.0-1.10.3-2.2-0.3
Patch foraging water rate 18 sec0.60.81.1-1.01.1-0.21.0
Patch foraging water rate 24 sec1.31.94.3-2.11.3-0.01.2
Patch foraging water rate 6 sec0.50.71.2-1.00.80.21.1
Seeking ratio, delayed vs. immediate footshock0.20.20.50.2-0.40.7-0.3
Distance traveled before self-admin0.91.03.50.5-0.31.90.3
Distance traveled after self-admin1.41.53.9-0.80.72.01.1
Extensor digitorum longus weight0.20.81.8-1.30.2-1.2-0.4
Bone: elastic displacement0.10.10.20.1-0.40.2-0.4
Bone: elastic work1.11.42.0-1.41.30.31.4
Bone: endosteal estimation1.22.77.0-2.71.3-1.20.8
Bone: endosteal perimeter4.08.314.2-3.83.1-2.02.3
Epididymis fat weight10.624.750.9-7.14.6-3.53.7
Delta time in closed arm before/after self-admin0.50.51.20.10.21.10.7
Delta time in open arm before/after self-admin0.40.41.2-0.60.1-1.1-0.3
Diff in mean of infusions in LGA sessions3.84.27.61.6-2.80.8-2.4
Delay discount exponential model param0.50.60.91.0-0.60.9-0.4
Extinction: sum of active levers before priming0.60.60.90.4-0.90.6-0.9
Active lever presses in extinction session 60.40.40.6-0.70.60.80.2
Bone: final force2.64.27.1-2.72.3-1.31.5
Bone: final moment2.74.48.7-3.02.3-1.31.5
Food consumed during 24 hour testing period0.40.51.9-0.1-0.31.4-0.3
Glucose3.75.67.4-2.72.5-1.52.6
Heart weight2.73.85.8-2.42.1-1.31.7
Delay discount hyperbolic model param0.30.30.70.8-0.40.5-0.3
Intermittent access intake day 1-15 change2.32.33.0-1.71.6-1.21.5
Intermittent access intake escalation4.04.05.7-2.12.3-0.42.4
Intermittent access intake escalation 22.42.44.3-1.61.70.32.1
Intermitt. access day 1 inactive lever presses1.31.43.0-1.70.4-1.50.0
Intermitt. access day 15 inactive lever presses0.10.20.3-0.40.5-0.30.4
Intermitt. access escalation Index0.40.41.2-0.4-0.11.10.2
Intermittent access day 1 total infusions0.20.20.4-0.30.7-0.30.4
Intermittent access day 15 total infusions1.71.92.8-1.41.7-0.21.6
Intermittent access terminal intake (last 3 days)0.80.91.4-0.91.2-0.31.2
Intermittent access total infusions1.51.62.9-0.91.7-0.91.4
Intermittent access day 1 locomotion0.20.20.40.10.50.60.6
Intermittent access day 15 total locomotion2.32.53.2-1.61.8-1.61.3
Intermittent access total locomotion0.91.02.1-0.41.4-0.11.4
Intermittent access standard deviation0.90.91.7-1.30.6-1.30.4
Left kidney weight4.011.415.7-4.03.41.63.9
Right kidney weight5.214.620.8-4.64.3-0.34.3
Cocaine induced anxiety4.85.69.52.4-2.33.1-1.3
Post-drug Anxiety1.31.44.10.7-0.92.0-0.3
Baseline Anxiety5.35.78.9-3.02.4-2.51.5
Tail length0.20.51.4-1.20.4-0.50.5
Length with tail1.86.713.4-3.72.5-1.42.3
Length without tail4.39.315.4-3.93.1-1.92.9
Times rat made contact with spout0.80.91.7-1.31.00.50.9
Lifetime Intake1.71.93.4-1.01.9-1.01.5
Liver weight, left3.14.99.9-3.12.1-1.81.4
Liver weight, right6.09.920.3-4.53.0-1.62.8
Locomotor activity0.91.52.2-1.31.5-0.31.4
Locomotor testing distance2.03.36.4-1.42.20.02.5
Locomotor testing rearing1.01.52.7-1.21.30.21.6
Locomotion in novel chamber0.81.03.1-0.30.41.80.9
Locomotion in novel chamber post-restriction0.60.81.91.40.11.00.1
Fecal boli incidents, locomotor time 11.71.96.30.11.0-2.50.4
Change in fecal boli incidents, locomotor task2.62.54.40.4-1.72.1-1.5
Time >=10cm from walls, locomotor time 11.91.92.31.3-1.51.2-1.4
Bouts of movement, locomotor time 11.11.22.7-1.40.4-1.6-0.2
Total resting periods, locomotor time 10.91.02.0-1.40.5-1.3-0.1
Rest time, locomotor task time 10.50.61.0-0.71.0-0.21.0
Distance moved, locomotor task time 10.30.30.50.1-0.60.7-0.7
Vertical activity count, locomotor time 11.31.43.50.8-1.01.9-0.5
Time >=10cm from walls, locomotor time 20.40.40.7-0.7-0.7-0.1-0.8
Bouts of movement, locomotor time 22.02.23.51.1-1.91.5-1.2
Total resting periods, locomotor time 21.21.32.00.7-1.41.4-0.9
Rest time, locomotor task time 20.20.20.40.10.50.30.7
Distance moved, locomotor task time 20.30.30.9-0.30.2-0.9-0.5
Vertical activity count, locomotor time 20.20.20.6-0.50.2-0.80.1
Light reinforcement 11.22.12.81.3-1.71.6-1.3
Light reinforcement 21.82.43.41.5-1.61.8-1.1
Bone: marrow area1.32.87.4-2.71.3-1.20.8
Bone: maximum diameter6.311.522.2-4.73.2-3.12.0
Bone: maximum force2.44.17.0-2.62.3-1.21.6
Bone: maximum moment2.54.38.4-2.92.3-1.11.5
Mean time between licks in bursts0.10.10.4-0.2-0.3-0.3-0.6
Mean num. licks in bursts0.70.91.8-0.11.00.91.3
Cd content in liver2.42.63.71.9-1.80.5-1.8
Co content in liver0.10.10.20.5-0.30.0-0.1
Cu content in liver0.10.10.2-0.30.40.00.1
Fe content in liver0.10.10.40.20.0-0.6-0.1
K content in liver0.70.71.40.6-1.1-0.0-1.2
Mg content in liver0.60.61.90.0-0.8-0.4-1.4
Mn content in liver1.31.52.11.0-1.41.4-1.0
Na content in liver1.01.01.50.9-1.2-0.6-1.2
Rb content in liver1.41.82.81.3-1.70.1-1.6
Se content in liver0.50.60.80.9-0.6-0.7-0.8
Sr content in liver2.01.82.41.5-1.41.6-0.8
Zn content in liver2.42.73.31.8-1.61.7-1.5
Bone: minimum diameter2.75.112.2-3.51.9-1.81.1
Time in familiar zone, hab. session 10.20.10.60.8-0.00.00.1
Time in novel zone, hab. session 10.50.51.5-1.20.2-0.70.0
Total zone transitions, hab. session 11.72.43.5-1.71.8-0.01.9
Total locomotion distance, hab. session 10.20.30.8-0.60.10.90.5
Locomotion velocity, hab. session 10.30.41.2-0.30.11.10.4
Time in familiar zone, hab. session 21.21.32.9-1.70.5-1.3-0.4
Time in novel zone, hab. session 20.50.50.90.90.30.70.9
Total zone transitions, hab. session 21.92.53.5-1.81.9-0.31.9
Total locomotion distance, hab. session 21.11.42.1-1.51.10.81.3
Locomotion velocity, hab. session 20.81.11.4-1.10.90.91.2
Novel to familiar place preference ratio0.30.30.70.0-0.4-0.8-0.6
Novelty place preference0.30.30.8-0.2-0.2-0.9-0.4
Time in novel zone, NPP test0.50.61.7-0.6-0.0-1.3-0.5
Total zone transitions, NPP test1.11.63.4-1.91.20.61.1
Total locomotion distance, NPP test0.91.22.5-1.60.61.10.7
Locomotion velocity, NPP test0.91.23.1-1.10.41.80.7
Intraocular pressure4.35.99.3-2.52.5-3.01.5
Delta distance traveled before/after self-admin1.11.12.7-1.71.00.50.8
Delta ambulatory time before/after self-admin0.70.82.7-1.60.7-0.10.3
Parametrial fat weight6.412.423.8-4.92.7-4.01.5
Pavlov. Cond. lever latency0.10.10.2-0.3-0.2-0.4-0.5
Pavlov. Cond. magazine entry latency0.40.60.8-0.90.60.60.8
Pavlov. Cond. change in total contacts0.10.10.2-0.20.00.50.1
Pavlov. Cond. index score0.30.40.5-0.70.60.40.7
Pavlov. Cond. latency score0.20.30.3-0.60.50.30.6
Pavlov. Cond. lever contacts0.00.00.00.20.2-0.20.1
Pavlov. Cond. magazine entry number1.11.31.81.3-1.3-0.2-1.3
Pavlov. Cond. intertrial magazine entries0.20.30.5-0.20.7-0.70.4
Pavlov. Cond. lever-magazine prob. diff.0.20.30.4-0.60.50.30.5
Pavlov. Cond. response bias0.50.61.0-0.60.90.41.0
Pavlov. Cond. lever latency0.70.92.80.8-0.41.70.3
Pavlov. Cond. magazine entry latency0.70.82.7-1.70.6-0.40.3
Pavlov. Cond. change in total contacts1.21.63.6-1.21.1-1.90.2
Pavlov. Cond. index score1.31.62.8-1.71.2-1.40.5
Pavlov. Cond. latency score1.11.42.8-1.71.0-1.30.4
Pavlov. Cond. lever contacts0.50.71.2-1.00.7-1.10.4
Pavlov. Cond. magazine entry number0.70.82.61.6-0.70.4-0.4
Pavlov. Cond. intertrial magazine entries0.00.00.1-0.3-0.1-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.1.31.62.6-1.61.3-1.30.7
Pavlov. Cond. response bias0.91.22.1-1.40.9-1.20.5
Time in closed arm before self-admin0.20.20.4-0.5-0.30.6-0.5
Time in closed arm after self-admin0.60.61.80.3-0.51.3-0.3
Time in open arm before self-admin1.31.42.61.6-1.30.9-0.8
Time in open arm after self-admin0.40.40.70.8-0.5-0.8-0.5
Bone: periosteal estimation4.79.720.9-4.63.0-2.22.0
Bone: periosteal perimeter8.814.624.0-4.94.1-3.12.9
Bone: post-yield work0.20.30.4-0.6-0.5-0.2-0.6
Progressive ratio test 1 active lever presses2.12.24.2-1.02.1-0.11.9
Progressive ratio test 1 breakpoint1.01.12.2-0.41.5-0.31.3
Progressive ratio test 1 inactive lever presses0.50.50.9-0.50.70.60.9
Progressive ratio test 2 active lever presses3.23.55.6-1.72.4-0.92.2
Progressive ratio test 2 breakpoint2.83.25.1-1.62.3-1.02.0
Progressive ratio test 2 inactive lever presses0.91.11.4-1.20.9-1.10.8
Incentive Sensitization - Responses1.51.61.9-1.21.4-1.21.2
Incentive Sensitization - Breakpoint1.61.71.9-1.21.4-1.31.2
Sum of active levers in priming session hrs 5-62.22.22.71.6-1.60.9-1.6
Progressive ratio0.40.41.41.2-0.30.4-0.4
Food seeking constrained by brief footshock0.81.02.30.7-1.10.5-1.5
Seeking ratio, punishment vs. effort0.20.20.4-0.7-0.40.2-0.5
Retroperitoneal fat weight9.230.363.8-8.05.1-3.94.1
Reaction time number correct0.60.91.4-1.20.6-1.10.6
Reaction time mean minus median0.91.22.9-0.61.7-0.41.3
Reaction time mean minus median AUC1.21.62.7-0.91.70.41.6
Reaction time num false alarms0.00.10.2-0.1-0.20.0-0.5
Reaction time num false alarms AUC0.00.00.0-0.20.10.20.1
Reaction time trials correct on left0.60.91.4-1.20.6-1.10.6
Reaction time trials on left0.70.91.6-1.30.6-1.20.6
Reaction time mean0.50.81.7-0.01.3-0.31.1
Reaction time mean AUC0.20.30.70.40.8-0.10.7
Median of all reaction times0.40.61.20.11.0-0.11.1
Reaction time omissions0.30.40.9-0.90.3-0.60.3
Reaction time false alarm rate0.10.20.20.5-0.40.5-0.5
Reaction time premature initiation rate1.11.53.7-0.61.40.21.9
Reaction time premature initiations2.02.85.7-1.41.9-0.42.4
Std. dev. reaction times2.23.15.5-1.42.4-0.92.0
Reaction time trials completed0.70.91.6-1.30.6-1.20.6
Reaction time trials AUC0.71.11.7-1.30.7-1.30.7
Run reversals in cocaine runway, females0.80.81.3-0.91.1-0.50.9
Run reversals in cocaine runway, males2.22.13.91.3-2.01.2-1.2
Latency to leave start box in cocaine runway0.80.81.51.0-0.71.2-0.5
Latency to leave start box in cocaine runway, F1.21.32.31.2-1.01.5-0.7
Latency to leave start box in cocaine runway, M0.20.20.4-0.50.5-0.30.6
Std. dev. time between licks in bursts0.20.30.7-0.1-0.5-0.3-0.8
Total sessions with >9 infusions7.07.712.9-2.33.6-1.43.3
Short access day 1 total inactive lever presses0.70.71.4-1.20.60.70.8
Short access day 10 total inactive lever presses0.50.51.0-0.80.6-1.00.4
Short access day 1 total infusions1.21.32.3-0.81.40.31.5
Short access day 10 total infusions0.70.81.7-0.11.30.01.1
Short access total infusions1.21.42.8-0.71.7-0.31.5
Short access day 1 locomotion1.31.42.8-0.61.7-0.41.5
Short access day 10 total locomotion0.70.81.5-1.00.80.51.2
Short access total locomotion1.71.83.8-0.71.70.32.0
One hour access (0.3 mA shock)1.41.62.8-1.71.2-1.20.8
Compulsive drug intake0.30.30.70.2-0.70.1-0.8
One hour access (shock baseline)2.12.53.7-1.51.9-1.11.7
Social response proportion2.93.24.8-1.92.00.62.2
Social responses4.55.78.1-2.82.7-1.82.1
Social time1.52.03.2-1.51.8-0.21.6
Soleus weight2.88.113.5-3.73.1-0.73.0
Bone: stiffness1.52.43.6-1.71.9-0.91.5
Tibialis anterior weight0.30.92.60.4-0.3-1.6-0.9
Time to tail flick, vehicle, before self-admin2.02.14.3-1.31.3-2.10.7
Time to tail flick, vehicle, after self-admin0.30.30.60.10.8-0.10.7
Time to tail flick, test, before self-admin2.42.44.4-0.81.90.92.1
Time to tail flick, test, after self-admin1.91.92.7-1.61.4-1.60.8
Delta time to tail flick, vehicle, before/after SA0.10.10.30.4-0.00.60.2
Delta time to tail flick, test, before/after SA1.91.75.4-1.10.5-2.3-0.2
Tibia length1.74.77.7-2.82.4-0.32.3
Ambulatory time before self-admin0.70.72.0-0.30.31.40.8
Ambulatory time after self-admin1.71.94.5-1.00.72.11.2
Bone: tissue strength0.30.30.70.4-0.70.1-0.8
Total heroin consumption0.60.71.5-1.20.3-1.2-0.2
Bone: trabecular number0.81.22.2-0.8-0.4-1.5-1.4
Bone: trabecular spacing0.10.10.30.5-0.30.10.0
Bone: trabecular thickness3.84.59.8-3.11.8-2.10.8
Bone: trabecular tissue density1.01.42.9-0.51.60.21.7
Water consumed over 24 hours0.81.01.2-0.90.81.11.1
Number of responses in last shaping day0.20.20.4-0.10.6-0.10.5