Pdlim2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye alternative polyA NM_001007622.1 0.39 0.27 1.2e-03 0.07 0.14 0.12 0.13 3.2e-02 3.6e-03 7.8e-03 4.5e-03
2 Adipose gene expression Pdlim2 0.04 0.04 2.2e-04 0.02 0.03 0.03 0.03 9.1e-04 3.8e-04 5.6e-04 5.8e-04
3 PL isoform ratio NM_001007622.1 0.04 0.04 7.2e-04 0.02 0.03 0.02 0.03 2.9e-03 6.6e-04 2.6e-03 8.9e-04
4 Liver gene expression Pdlim2 0.03 0.03 3.3e-03 0.02 0.01 0.02 0.01 3.6e-03 1.7e-02 4.4e-03 3.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.42.41.6-1.6-1.5-1.5
Area under the delay curve0.00.00.0-0.20.20.20.1
BMI with tail0.41.31.5-1.21.21.20.9
BMI without tail0.71.51.71.2-1.2-1.2-1.3
Body weight0.41.81.8-1.41.31.31.4
Weight adjusted by age1.82.02.0-1.41.41.41.4
Bone surface0.51.01.01.0-1.0-1.0-0.9
Bone volume0.71.21.21.1-1.1-1.1-1.1
Breakpoint value in progressive ratio session0.00.00.0-0.20.20.20.2
Number of licking bursts0.00.00.0-0.10.10.10.2
Context. condit. distance diff. score0.91.01.01.0-1.0-1.0-1.0
Locomotion velocity, session 10.20.20.2-0.40.40.40.4
Locomotion distance, session 10.00.00.00.1-0.1-0.1-0.2
Locomotion velocity, session 20.00.00.00.2-0.2-0.2-0.1
Locomotion distance, session 20.00.00.00.2-0.2-0.2-0.1
Locomotion velocity, session 30.40.50.5-0.70.70.70.7
Locomotion distance, session 30.00.00.00.2-0.2-0.2-0.2
Stereotopy head waving bouts, day 30.70.80.8-0.90.90.90.9
Stereotopy head waving duration, day 32.63.23.2-1.81.81.81.8
Locomotion velocity, session 74.65.15.52.2-2.2-2.2-2.3
Locomotion distance, session 73.44.44.52.1-2.1-2.1-2.1
Stereotopy head waving bouts, day 71.71.92.0-1.41.41.41.3
Stereotopy head waving duration, day 72.42.93.0-1.71.71.71.7
Locomotion velocity, session 80.00.00.00.1-0.1-0.1-0.1
Locomotion distance, session 80.60.90.91.0-1.0-1.0-0.9
Degree of sensitization distance4.74.74.82.2-2.2-2.2-2.2
Degree of sensitization stereotypy1.11.21.3-1.11.11.11.1
Conditioned locomotion0.00.00.10.2-0.2-0.2-0.2
Cocaine response after cond. corrected0.30.30.3-0.50.50.50.6
Cocaine response after cond. not corrected0.20.20.2-0.40.40.40.4
Cocaine response before conditioning0.20.20.30.4-0.4-0.4-0.5
Saline control response0.20.30.30.5-0.5-0.5-0.5
Bone: connectivity density2.84.44.52.1-2.1-2.1-2.0
Bone: cortical apparent density0.00.00.10.2-0.2-0.2-0.3
Bone: cortical area0.00.00.00.1-0.1-0.1-0.1
Bone: cortical porosity1.41.51.6-1.31.21.21.2
Bone: cortical porosity0.60.60.6-0.80.80.80.8
Bone: cortical thickness0.00.00.10.2-0.2-0.2-0.3
Bone: cortical thickness0.00.10.10.2-0.2-0.2-0.3
Bone: cortical tissue density0.00.00.10.2-0.2-0.2-0.3
Condit. Reinf. active minus inactive responses0.50.50.6-0.70.70.70.8
Condit. Reinf. active-inactive response ratio2.12.32.4-1.51.51.51.4
Condit. Reinf. active responses0.00.00.0-0.00.00.00.2
Condit. Reinf. inactive responses2.83.33.41.8-1.8-1.8-1.8
Incentive salience index mean0.80.91.0-0.90.90.91.0
Condit. Reinf. lever presses0.30.30.4-0.60.60.60.6
Condit. Reinf. active minus inactive responses0.30.40.50.6-0.6-0.6-0.7
Condit. Reinf. active-inactive response ratio0.10.10.1-0.40.40.40.3
Condit. Reinf. active responses0.91.21.31.1-1.1-1.1-1.2
Condit. Reinf. inactive responses2.32.82.91.7-1.7-1.7-1.7
Condit. Reinf. lever presses0.10.10.10.3-0.3-0.3-0.3
Condit. Reinf. lever reinforcers received0.60.80.90.9-0.9-0.9-0.9
Conditioned reinforcement - actives2.72.72.71.7-1.6-1.6-1.6
Conditioned reinforcement - inactives3.03.43.41.9-1.9-1.8-1.8
Conditioned locomotion1.01.21.21.1-1.1-1.1-1.1
Patch foraging indifference point 0 sec2.03.13.51.9-1.9-1.9-1.5
Patch foraging indifference point AUC0.50.60.6-0.80.80.80.7
Delay disc. indifference point, 0s delay0.30.40.40.6-0.6-0.6-0.6
Delay disc. indifference point, 16s delay0.20.20.20.5-0.5-0.5-0.5
Delay disc. indifference point, 2s delay1.41.61.6-1.31.31.31.2
Delay disc. indifference point, 24s delay0.20.20.2-0.40.40.40.4
Delay disc. indifference point, 4s delay1.61.61.7-1.31.31.31.3
Delay disc. indifference point, 8s delay0.00.00.00.2-0.2-0.2-0.2
Indifference point function ln k0.00.00.00.1-0.1-0.1-0.2
Indifference point function log k0.00.00.00.1-0.1-0.1-0.2
Patch foraging total patch changes 0 sec1.62.62.91.7-1.7-1.7-1.4
Patch foraging total patch changes 12 sec0.60.81.01.0-1.0-1.0-0.7
Patch foraging total patch changes 18 sec1.82.32.61.6-1.6-1.6-1.3
Patch foraging total patch changes 24 sec0.00.00.00.1-0.1-0.1-0.2
Patch foraging total patch changes 6 sec0.20.40.50.7-0.7-0.7-0.3
Patch foraging time to switch 0 sec0.71.11.21.1-1.1-1.1-0.8
Patch foraging water rate 0 sec0.30.60.6-0.80.70.80.7
Patch foraging water rate 12 sec0.60.91.0-1.01.01.00.8
Patch foraging water rate 18 sec2.83.84.1-2.02.02.01.7
Patch foraging water rate 24 sec0.10.10.1-0.30.30.30.2
Patch foraging water rate 6 sec2.02.83.1-1.81.71.71.5
Seeking ratio, delayed vs. immediate footshock1.11.31.31.1-1.1-1.1-1.1
Distance traveled before self-admin1.01.01.0-1.01.01.01.0
Distance traveled after self-admin2.22.52.5-1.61.61.61.6
Extensor digitorum longus weight12.950.751.5-7.17.17.17.2
Bone: elastic displacement0.60.70.90.8-0.8-0.8-1.0
Bone: elastic work0.30.40.60.6-0.6-0.6-0.8
Bone: endosteal estimation0.10.30.4-0.50.50.50.6
Bone: endosteal perimeter0.10.20.2-0.40.40.40.5
Epididymis fat weight1.94.55.12.3-2.3-2.3-1.7
Delta time in closed arm before/after self-admin2.22.12.11.5-1.4-1.5-1.4
Delta time in open arm before/after self-admin0.00.00.00.2-0.2-0.2-0.2
Diff in mean of infusions in LGA sessions2.62.92.9-1.71.71.71.7
Delay discount exponential model param0.20.20.20.5-0.5-0.5-0.4
Extinction: sum of active levers before priming2.52.52.61.6-1.6-1.6-1.6
Active lever presses in extinction session 60.40.30.30.6-0.6-0.6-0.6
Bone: final force0.10.20.2-0.40.40.40.3
Bone: final moment0.10.10.1-0.40.40.40.3
Food consumed during 24 hour testing period0.20.20.30.5-0.5-0.5-0.4
Glucose0.00.00.00.2-0.2-0.2-0.1
Heart weight0.00.00.10.1-0.1-0.10.2
Delay discount hyperbolic model param0.50.50.60.7-0.7-0.7-0.7
Intermittent access intake day 1-15 change2.12.12.11.4-1.4-1.4-1.4
Intermittent access intake escalation1.41.31.41.2-1.2-1.2-1.1
Intermittent access intake escalation 20.40.40.40.6-0.6-0.6-0.6
Intermitt. access day 1 inactive lever presses0.10.10.10.3-0.3-0.3-0.3
Intermitt. access day 15 inactive lever presses0.00.00.00.1-0.1-0.1-0.1
Intermitt. access escalation Index0.50.40.4-0.60.60.60.6
Intermittent access day 1 total infusions0.00.00.00.2-0.2-0.2-0.2
Intermittent access day 15 total infusions1.01.11.11.0-1.1-1.0-1.0
Intermittent access terminal intake (last 3 days)0.20.20.20.5-0.5-0.5-0.5
Intermittent access total infusions0.40.50.50.7-0.7-0.7-0.7
Intermittent access day 1 locomotion0.30.30.40.6-0.6-0.6-0.6
Intermittent access day 15 total locomotion1.51.61.61.3-1.3-1.3-1.2
Intermittent access total locomotion0.50.50.50.7-0.7-0.7-0.7
Intermittent access standard deviation1.21.31.31.1-1.1-1.1-1.1
Left kidney weight0.30.91.0-0.90.90.91.0
Right kidney weight0.10.20.30.5-0.6-0.60.2
Cocaine induced anxiety0.10.10.1-0.40.40.40.4
Post-drug Anxiety0.50.50.50.7-0.7-0.7-0.7
Baseline Anxiety0.80.80.90.9-0.9-0.9-0.9
Tail length0.82.42.71.6-1.6-1.6-1.3
Length with tail0.10.40.9-0.50.50.50.9
Length without tail3.98.58.9-2.92.92.93.0
Times rat made contact with spout0.40.50.50.7-0.7-0.7-0.7
Lifetime Intake0.40.50.50.7-0.7-0.7-0.7
Liver weight, left2.33.73.8-1.91.91.92.0
Liver weight, right0.81.31.4-1.11.11.11.2
Locomotor activity1.32.12.3-1.51.51.51.2
Locomotor testing distance0.00.10.20.0-0.0-0.0-0.5
Locomotor testing rearing0.20.30.30.6-0.6-0.6-0.5
Locomotion in novel chamber0.20.20.20.5-0.5-0.5-0.5
Locomotion in novel chamber post-restriction0.60.70.8-0.90.90.90.9
Fecal boli incidents, locomotor time 10.80.80.9-0.90.90.90.9
Change in fecal boli incidents, locomotor task0.10.10.1-0.30.30.30.3
Time >=10cm from walls, locomotor time 10.90.90.91.0-0.9-1.0-1.0
Bouts of movement, locomotor time 15.05.55.5-2.42.32.32.3
Total resting periods, locomotor time 15.05.55.5-2.42.32.32.3
Rest time, locomotor task time 13.23.63.6-1.91.91.91.9
Distance moved, locomotor task time 13.13.43.51.9-1.8-1.9-1.8
Vertical activity count, locomotor time 11.11.11.21.1-1.1-1.1-1.0
Time >=10cm from walls, locomotor time 20.40.40.4-0.60.60.60.6
Bouts of movement, locomotor time 23.74.04.1-2.02.02.02.0
Total resting periods, locomotor time 24.34.64.7-2.22.12.12.1
Rest time, locomotor task time 21.11.21.2-1.11.11.11.1
Distance moved, locomotor task time 22.83.23.31.8-1.8-1.8-1.8
Vertical activity count, locomotor time 20.30.40.40.6-0.6-0.6-0.6
Light reinforcement 13.66.57.32.5-2.5-2.5-2.7
Light reinforcement 21.21.61.81.4-1.4-1.4-1.0
Bone: marrow area0.10.20.2-0.40.40.40.5
Bone: maximum diameter0.30.60.7-0.80.80.80.8
Bone: maximum force0.20.40.4-0.60.60.60.6
Bone: maximum moment0.10.20.2-0.50.50.50.4
Mean time between licks in bursts2.02.93.01.7-1.7-1.7-1.7
Mean num. licks in bursts0.40.50.60.7-0.7-0.7-0.7
Cd content in liver0.30.30.30.6-0.6-0.6-0.6
Co content in liver3.84.54.6-2.12.12.12.0
Cu content in liver0.50.70.7-0.80.80.80.8
Fe content in liver2.12.52.61.6-1.6-1.6-1.5
K content in liver0.60.60.60.8-0.8-0.8-0.7
Mg content in liver1.31.31.31.1-1.1-1.1-1.1
Mn content in liver2.02.32.41.5-1.5-1.5-1.5
Na content in liver0.70.70.7-0.80.80.80.9
Rb content in liver0.20.30.30.6-0.6-0.6-0.4
Se content in liver0.91.11.21.1-1.1-1.0-1.1
Sr content in liver0.50.40.40.7-0.6-0.7-0.7
Zn content in liver1.01.11.1-1.01.01.01.0
Bone: minimum diameter0.10.30.3-0.50.50.50.5
Time in familiar zone, hab. session 10.00.00.1-0.20.10.10.2
Time in novel zone, hab. session 11.21.21.3-1.11.11.11.0
Total zone transitions, hab. session 10.20.30.3-0.50.50.50.5
Total locomotion distance, hab. session 10.00.00.00.1-0.1-0.1-0.0
Locomotion velocity, hab. session 10.10.10.10.4-0.4-0.4-0.4
Time in familiar zone, hab. session 22.12.22.4-1.51.51.51.6
Time in novel zone, hab. session 20.80.80.90.9-0.9-0.9-1.0
Total zone transitions, hab. session 21.41.81.8-1.41.41.31.3
Total locomotion distance, hab. session 20.20.30.4-0.60.60.50.6
Locomotion velocity, hab. session 20.60.80.9-0.90.90.90.9
Novel to familiar place preference ratio1.61.71.81.3-1.3-1.3-1.3
Novelty place preference1.31.31.41.1-1.1-1.1-1.2
Time in novel zone, NPP test0.60.70.70.8-0.8-0.8-0.8
Total zone transitions, NPP test0.10.20.20.5-0.5-0.5-0.4
Total locomotion distance, NPP test2.53.53.61.9-1.9-1.9-1.7
Locomotion velocity, NPP test2.43.43.61.9-1.9-1.9-1.7
Intraocular pressure0.71.01.50.9-0.9-0.9-1.2
Delta distance traveled before/after self-admin2.42.62.6-1.61.61.61.6
Delta ambulatory time before/after self-admin2.22.52.5-1.61.61.61.5
Parametrial fat weight3.26.26.92.6-2.6-2.6-2.0
Pavlov. Cond. lever latency0.00.00.0-0.00.00.0-0.1
Pavlov. Cond. magazine entry latency0.00.10.10.2-0.2-0.2-0.3
Pavlov. Cond. change in total contacts1.01.11.1-1.01.01.01.0
Pavlov. Cond. index score0.00.10.1-0.30.30.30.2
Pavlov. Cond. latency score0.00.00.0-0.10.10.10.1
Pavlov. Cond. lever contacts0.00.00.00.1-0.1-0.10.0
Pavlov. Cond. magazine entry number0.40.50.50.7-0.7-0.7-0.7
Pavlov. Cond. intertrial magazine entries0.10.10.10.3-0.3-0.3-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.40.40.40.4
Pavlov. Cond. response bias0.10.20.2-0.40.40.40.4
Pavlov. Cond. lever latency0.30.50.50.7-0.7-0.7-0.7
Pavlov. Cond. magazine entry latency0.10.10.10.3-0.3-0.3-0.3
Pavlov. Cond. change in total contacts1.62.22.3-1.51.51.51.5
Pavlov. Cond. index score0.50.60.7-0.80.80.80.8
Pavlov. Cond. latency score0.30.40.4-0.60.60.60.6
Pavlov. Cond. lever contacts0.40.50.5-0.70.70.70.7
Pavlov. Cond. magazine entry number0.00.10.1-0.30.30.30.2
Pavlov. Cond. intertrial magazine entries6.17.97.92.8-2.8-2.8-2.8
Pavlov. Cond. lever-magazine prob. diff.0.60.70.8-0.90.90.90.9
Pavlov. Cond. response bias0.40.60.6-0.80.80.80.8
Time in closed arm before self-admin1.92.22.2-1.51.51.51.5
Time in closed arm after self-admin0.60.60.6-0.80.80.80.8
Time in open arm before self-admin0.10.10.1-0.30.30.30.3
Time in open arm after self-admin0.10.10.10.3-0.3-0.3-0.3
Bone: periosteal estimation0.00.10.1-0.30.30.30.3
Bone: periosteal perimeter0.00.00.0-0.10.10.10.1
Bone: post-yield work0.10.20.20.4-0.4-0.4-0.3
Progressive ratio test 1 active lever presses0.20.20.2-0.50.40.40.4
Progressive ratio test 1 breakpoint0.10.10.1-0.30.30.30.3
Progressive ratio test 1 inactive lever presses1.61.81.81.3-1.3-1.3-1.3
Progressive ratio test 2 active lever presses0.20.20.20.5-0.5-0.5-0.4
Progressive ratio test 2 breakpoint0.20.30.30.5-0.5-0.5-0.5
Progressive ratio test 2 inactive lever presses0.40.40.40.7-0.7-0.7-0.7
Incentive Sensitization - Responses1.01.01.01.0-1.0-1.0-1.0
Incentive Sensitization - Breakpoint1.41.41.41.2-1.2-1.2-1.2
Sum of active levers in priming session hrs 5-60.10.10.10.2-0.2-0.2-0.2
Progressive ratio0.10.10.10.4-0.4-0.4-0.4
Food seeking constrained by brief footshock1.31.61.6-1.31.31.31.2
Seeking ratio, punishment vs. effort0.91.11.1-1.11.11.11.0
Retroperitoneal fat weight0.10.40.60.8-0.8-0.8-0.1
Reaction time number correct0.60.80.9-0.90.90.90.8
Reaction time mean minus median0.10.20.2-0.40.50.40.4
Reaction time mean minus median AUC0.10.10.1-0.40.40.40.3
Reaction time num false alarms0.00.00.1-0.20.20.20.1
Reaction time num false alarms AUC0.00.00.0-0.10.00.0-0.1
Reaction time trials correct on left0.60.80.9-0.90.90.90.8
Reaction time trials on left0.40.60.6-0.80.80.80.6
Reaction time mean0.10.20.2-0.50.50.50.4
Reaction time mean AUC0.30.40.4-0.70.70.70.5
Median of all reaction times0.10.10.1-0.20.30.20.4
Reaction time omissions2.43.33.91.8-1.8-1.8-2.0
Reaction time false alarm rate0.10.20.30.4-0.4-0.4-0.5
Reaction time premature initiation rate1.31.71.8-1.31.31.31.1
Reaction time premature initiations1.92.73.0-1.71.71.71.4
Std. dev. reaction times0.10.20.2-0.50.50.50.2
Reaction time trials completed0.40.60.6-0.80.80.80.6
Reaction time trials AUC0.40.50.6-0.80.80.80.6
Run reversals in cocaine runway, females4.14.04.12.0-2.0-2.0-2.0
Run reversals in cocaine runway, males2.42.42.4-1.61.51.51.5
Latency to leave start box in cocaine runway0.60.60.6-0.80.80.80.8
Latency to leave start box in cocaine runway, F1.51.61.6-1.31.31.31.3
Latency to leave start box in cocaine runway, M1.31.21.31.1-1.1-1.1-1.1
Std. dev. time between licks in bursts1.41.71.81.3-1.3-1.3-1.3
Total sessions with >9 infusions0.00.00.00.1-0.1-0.1-0.1
Short access day 1 total inactive lever presses0.50.60.60.8-0.8-0.8-0.7
Short access day 10 total inactive lever presses0.40.40.40.7-0.6-0.6-0.6
Short access day 1 total infusions0.10.10.1-0.30.30.30.3
Short access day 10 total infusions0.00.00.00.2-0.2-0.2-0.2
Short access total infusions0.20.20.20.5-0.5-0.5-0.5
Short access day 1 locomotion0.20.20.2-0.40.40.40.4
Short access day 10 total locomotion0.60.60.60.8-0.8-0.8-0.8
Short access total locomotion0.70.80.80.9-0.9-0.9-0.9
One hour access (0.3 mA shock)0.30.30.30.6-0.6-0.6-0.5
Compulsive drug intake0.00.00.0-0.10.10.10.1
One hour access (shock baseline)0.00.00.00.0-0.0-0.00.0
Social response proportion0.10.10.2-0.30.30.30.4
Social responses1.11.41.41.2-1.2-1.2-1.1
Social time0.40.50.50.7-0.7-0.7-0.7
Soleus weight1.03.03.5-1.71.71.71.9
Bone: stiffness0.60.91.0-1.00.91.01.0
Tibialis anterior weight8.428.630.3-5.35.35.35.5
Time to tail flick, vehicle, before self-admin0.80.90.90.9-0.9-0.9-0.9
Time to tail flick, vehicle, after self-admin1.82.02.0-1.41.41.41.4
Time to tail flick, test, before self-admin1.00.90.91.0-1.0-1.0-0.9
Time to tail flick, test, after self-admin3.33.43.51.9-1.9-1.9-1.8
Delta time to tail flick, vehicle, before/after SA0.40.40.4-0.60.60.60.6
Delta time to tail flick, test, before/after SA0.30.20.20.5-0.5-0.5-0.5
Tibia length1.23.23.41.8-1.8-1.8-1.7
Ambulatory time before self-admin0.60.60.6-0.80.80.80.8
Ambulatory time after self-admin3.74.14.2-2.02.02.02.0
Bone: tissue strength0.10.10.10.3-0.3-0.3-0.2
Total heroin consumption0.30.30.4-0.60.60.60.6
Bone: trabecular number2.54.04.12.0-2.0-2.0-1.9
Bone: trabecular spacing2.33.03.2-1.81.81.81.6
Bone: trabecular thickness1.21.41.51.2-1.2-1.2-1.1
Bone: trabecular tissue density1.21.81.9-1.41.41.41.2
Water consumed over 24 hours1.31.61.7-1.31.31.31.3
Number of responses in last shaping day0.00.00.0-0.00.00.00.0