P4htm

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression P4htm 0.09 0.06 5.2e-04 0.03 0.02 0.02 0.02 7.6e-04 2.8e-03 2.9e-03 4.0e-03
2 Brain gene expression P4htm 0.02 0.02 8.4e-03 0.03 0.02 0 0.01 1.8e-03 3.9e-03 2.2e-01 1.2e-02
3 pVTA gene expression P4htm 0.03 0.02 4.2e-03 0.02 0.02 0.02 0.02 4.8e-03 1.1e-02 7.0e-03 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.52.20.21.51.5
Area under the delay curve0.80.91.51.20.80.8
BMI with tail0.10.50.7-0.3-0.8-0.9
BMI without tail0.20.71.5-1.20.70.5
Body weight1.46.017.3-4.2-0.6-0.6
Weight adjusted by age0.40.71.0-0.2-1.0-1.0
Bone surface0.10.10.20.50.10.3
Bone volume0.20.30.40.40.60.7
Breakpoint value in progressive ratio session0.10.20.20.20.40.5
Number of licking bursts1.11.82.80.3-1.6-1.7
Context. condit. distance diff. score0.00.10.1-0.0-0.3-0.3
Locomotion velocity, session 10.20.20.20.40.40.4
Locomotion distance, session 10.50.70.8-0.70.90.9
Locomotion velocity, session 20.30.40.50.7-0.6-0.6
Locomotion distance, session 20.30.40.50.50.70.7
Locomotion velocity, session 30.60.71.1-0.01.01.0
Locomotion distance, session 30.50.51.41.20.40.3
Stereotopy head waving bouts, day 31.82.13.3-0.1-1.7-1.8
Stereotopy head waving duration, day 30.40.50.8-0.4-0.8-0.9
Locomotion velocity, session 71.41.62.4-0.21.51.5
Locomotion distance, session 70.70.91.51.20.70.8
Stereotopy head waving bouts, day 70.10.10.10.10.40.3
Stereotopy head waving duration, day 70.30.30.3-0.60.60.5
Locomotion velocity, session 80.30.30.5-0.20.70.7
Locomotion distance, session 80.91.32.0-0.11.41.4
Degree of sensitization distance0.50.61.3-1.10.40.5
Degree of sensitization stereotypy0.91.01.5-0.21.21.2
Conditioned locomotion1.21.43.51.90.60.7
Cocaine response after cond. corrected1.72.03.0-0.6-1.7-1.7
Cocaine response after cond. not corrected1.41.61.8-1.4-1.2-1.2
Cocaine response before conditioning0.81.01.1-1.01.00.9
Saline control response1.62.12.6-1.11.61.5
Bone: connectivity density1.42.23.20.61.81.7
Bone: cortical apparent density0.20.20.30.40.60.5
Bone: cortical area1.42.13.60.4-1.9-1.6
Bone: cortical porosity2.62.84.30.12.02.1
Bone: cortical porosity2.62.84.30.12.02.1
Bone: cortical thickness1.72.84.7-0.3-2.2-1.9
Bone: cortical thickness0.10.10.30.0-0.5-0.3
Bone: cortical tissue density0.20.20.30.40.60.5
Condit. Reinf. active minus inactive responses0.20.30.4-0.2-0.6-0.6
Condit. Reinf. active-inactive response ratio0.70.81.1-0.5-1.0-1.0
Condit. Reinf. active responses0.20.20.40.0-0.6-0.6
Condit. Reinf. inactive responses0.10.20.50.70.10.2
Incentive salience index mean0.20.20.40.3-0.6-0.5
Condit. Reinf. lever presses0.60.81.91.4-0.6-0.4
Condit. Reinf. active minus inactive responses0.40.61.4-1.2-0.4-0.4
Condit. Reinf. active-inactive response ratio0.50.61.1-1.1-0.6-0.6
Condit. Reinf. active responses0.40.61.6-1.2-0.3-0.1
Condit. Reinf. inactive responses0.00.00.00.2-0.10.1
Condit. Reinf. lever presses0.50.72.1-1.5-0.10.2
Condit. Reinf. lever reinforcers received0.50.72.0-1.4-0.2-0.1
Conditioned reinforcement - actives1.22.04.12.0-0.8-1.1
Conditioned reinforcement - inactives3.85.56.12.2-2.5-2.4
Conditioned locomotion0.40.50.90.90.70.2
Patch foraging indifference point 0 sec1.42.62.8-1.51.71.6
Patch foraging indifference point AUC0.71.01.5-0.11.21.2
Delay disc. indifference point, 0s delay0.10.10.1-0.00.30.3
Delay disc. indifference point, 16s delay0.40.40.70.80.50.5
Delay disc. indifference point, 2s delay0.10.10.10.40.30.3
Delay disc. indifference point, 24s delay0.50.51.01.00.50.5
Delay disc. indifference point, 4s delay0.40.41.31.20.0-0.0
Delay disc. indifference point, 8s delay0.81.01.91.40.70.7
Indifference point function ln k0.30.61.01.0-0.5-0.7
Indifference point function log k0.30.61.01.0-0.5-0.7
Patch foraging total patch changes 0 sec1.12.02.5-1.61.41.3
Patch foraging total patch changes 12 sec0.60.81.3-1.20.60.7
Patch foraging total patch changes 18 sec2.13.23.4-1.71.81.8
Patch foraging total patch changes 24 sec0.61.02.7-1.70.50.4
Patch foraging total patch changes 6 sec1.42.13.2-0.61.81.7
Patch foraging time to switch 0 sec0.51.01.50.4-1.2-1.2
Patch foraging water rate 0 sec0.10.20.5-0.70.10.1
Patch foraging water rate 12 sec0.00.10.2-0.4-0.00.1
Patch foraging water rate 18 sec0.50.71.3-0.2-1.1-0.9
Patch foraging water rate 24 sec0.30.51.2-1.1-0.3-0.3
Patch foraging water rate 6 sec0.20.30.5-0.70.40.3
Seeking ratio, delayed vs. immediate footshock0.60.71.51.20.70.5
Distance traveled before self-admin1.31.72.50.8-1.4-1.6
Distance traveled after self-admin0.50.60.80.8-0.8-0.9
Extensor digitorum longus weight0.21.01.30.6-1.1-1.1
Bone: elastic displacement0.40.50.7-0.2-0.8-0.9
Bone: elastic work0.50.71.0-0.6-1.0-0.9
Bone: endosteal estimation0.41.01.6-0.31.11.2
Bone: endosteal perimeter0.40.82.41.5-0.00.2
Epididymis fat weight0.10.30.7-0.9-0.2-0.3
Delta time in closed arm before/after self-admin0.20.20.30.60.20.2
Delta time in open arm before/after self-admin0.10.10.2-0.40.0-0.1
Diff in mean of infusions in LGA sessions2.22.74.4-0.4-1.9-2.1
Delay discount exponential model param0.91.01.7-1.3-0.8-0.8
Extinction: sum of active levers before priming0.50.60.9-0.00.90.9
Active lever presses in extinction session 61.01.01.6-0.21.11.3
Bone: final force0.81.31.9-1.4-1.1-0.8
Bone: final moment1.01.62.1-1.4-1.3-1.0
Food consumed during 24 hour testing period0.30.51.4-1.2-0.1-0.0
Glucose1.11.81.9-1.31.31.4
Heart weight2.23.43.9-1.6-2.0-2.0
Delay discount hyperbolic model param0.80.91.9-1.4-0.6-0.6
Intermittent access intake day 1-15 change1.12.32.61.6-1.5-1.4
Intermittent access intake escalation1.53.03.41.8-1.7-1.6
Intermittent access intake escalation 22.22.53.31.0-1.8-1.8
Intermitt. access day 1 inactive lever presses0.20.91.40.3-1.2-1.1
Intermitt. access day 15 inactive lever presses1.42.93.91.2-1.8-2.0
Intermitt. access escalation Index0.60.91.6-0.21.31.0
Intermittent access day 1 total infusions0.10.20.50.7-0.3-0.3
Intermittent access day 15 total infusions1.62.33.61.9-1.4-1.3
Intermittent access terminal intake (last 3 days)0.91.22.41.6-0.8-0.7
Intermittent access total infusions1.41.62.91.7-1.1-1.0
Intermittent access day 1 locomotion0.20.30.5-0.10.70.6
Intermittent access day 15 total locomotion0.30.61.61.3-0.0-0.2
Intermittent access total locomotion0.50.61.91.40.20.1
Intermittent access standard deviation1.73.55.30.5-2.2-2.3
Left kidney weight0.21.02.8-1.70.30.2
Right kidney weight0.10.61.1-1.10.60.6
Cocaine induced anxiety0.20.30.6-0.8-0.3-0.3
Post-drug Anxiety0.10.10.1-0.4-0.1-0.1
Baseline Anxiety0.20.20.30.60.50.4
Tail length1.87.118.4-4.31.21.2
Length with tail2.611.233.5-5.8-0.3-0.2
Length without tail2.16.818.3-4.3-1.2-0.9
Times rat made contact with spout0.30.30.8-0.9-0.3-0.3
Lifetime Intake1.21.53.71.9-0.6-0.5
Liver weight, left0.71.21.3-1.21.01.0
Liver weight, right1.32.33.3-1.81.11.5
Locomotor activity2.13.28.6-2.90.70.8
Locomotor testing distance1.32.36.5-2.60.50.4
Locomotor testing rearing0.00.00.0-0.2-0.1-0.2
Locomotion in novel chamber0.70.91.30.5-1.1-1.1
Locomotion in novel chamber post-restriction0.40.71.0-0.60.91.0
Fecal boli incidents, locomotor time 10.30.41.0-1.0-0.3-0.2
Change in fecal boli incidents, locomotor task0.20.20.30.60.30.3
Time >=10cm from walls, locomotor time 10.60.60.70.80.80.8
Bouts of movement, locomotor time 10.10.10.3-0.5-0.1-0.1
Total resting periods, locomotor time 10.00.10.1-0.4-0.1-0.1
Rest time, locomotor task time 10.10.10.30.50.10.1
Distance moved, locomotor task time 10.40.51.0-1.0-0.6-0.5
Vertical activity count, locomotor time 10.20.51.6-1.3-0.1-0.0
Time >=10cm from walls, locomotor time 20.30.51.0-1.00.40.4
Bouts of movement, locomotor time 20.40.70.90.6-0.9-0.9
Total resting periods, locomotor time 20.30.60.60.8-0.7-0.8
Rest time, locomotor task time 20.10.10.2-0.20.40.4
Distance moved, locomotor task time 20.20.30.4-0.7-0.5-0.4
Vertical activity count, locomotor time 20.00.00.1-0.2-0.1-0.1
Light reinforcement 10.20.51.3-1.10.10.2
Light reinforcement 20.40.71.20.30.91.1
Bone: marrow area0.51.11.7-0.31.21.3
Bone: maximum diameter0.81.52.40.7-1.5-1.3
Bone: maximum force0.30.51.3-1.1-0.4-0.1
Bone: maximum moment0.30.51.3-1.1-0.5-0.2
Mean time between licks in bursts0.41.02.41.6-0.5-0.5
Mean num. licks in bursts1.42.12.8-0.91.71.7
Cd content in liver0.40.50.60.40.80.8
Co content in liver1.41.62.31.5-1.1-1.1
Cu content in liver1.92.36.1-2.50.60.6
Fe content in liver0.60.71.9-1.4-0.4-0.4
K content in liver0.20.10.4-0.60.20.2
Mg content in liver0.20.20.70.8-0.2-0.2
Mn content in liver0.80.91.30.11.11.1
Na content in liver0.70.70.9-1.00.80.8
Rb content in liver0.40.51.0-1.0-0.4-0.4
Se content in liver0.00.00.0-0.2-0.1-0.1
Sr content in liver0.10.10.20.50.30.3
Zn content in liver1.31.53.1-1.80.80.8
Bone: minimum diameter0.30.51.11.0-0.5-0.3
Time in familiar zone, hab. session 11.01.01.51.2-0.9-0.8
Time in novel zone, hab. session 10.20.20.5-0.70.20.2
Total zone transitions, hab. session 10.40.61.0-0.31.00.9
Total locomotion distance, hab. session 10.20.20.4-0.30.60.5
Locomotion velocity, hab. session 10.40.50.8-0.40.90.8
Time in familiar zone, hab. session 21.01.11.80.6-1.3-1.1
Time in novel zone, hab. session 20.50.51.0-0.11.00.7
Total zone transitions, hab. session 20.00.00.1-0.0-0.1-0.3
Total locomotion distance, hab. session 20.20.20.4-0.60.50.2
Locomotion velocity, hab. session 20.20.20.3-0.50.60.3
Novel to familiar place preference ratio5.76.29.0-1.13.02.9
Novelty place preference6.57.010.2-1.03.23.1
Time in novel zone, NPP test5.86.28.9-1.23.02.9
Total zone transitions, NPP test1.21.81.9-1.41.41.2
Total locomotion distance, NPP test0.40.51.1-1.10.60.4
Locomotion velocity, NPP test0.60.81.3-1.10.90.7
Intraocular pressure1.31.82.1-1.31.41.3
Delta distance traveled before/after self-admin0.30.40.5-0.20.70.7
Delta ambulatory time before/after self-admin0.81.01.2-1.10.91.0
Parametrial fat weight0.30.61.8-1.3-0.1-0.1
Pavlov. Cond. lever latency2.32.85.6-2.41.31.1
Pavlov. Cond. magazine entry latency3.95.09.93.1-1.6-1.6
Pavlov. Cond. change in total contacts1.31.41.81.4-1.1-1.1
Pavlov. Cond. index score3.84.98.02.8-1.9-1.7
Pavlov. Cond. latency score3.44.48.12.8-1.7-1.5
Pavlov. Cond. lever contacts1.61.93.11.8-1.2-1.1
Pavlov. Cond. magazine entry number4.25.39.7-3.11.81.7
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.80.50.5
Pavlov. Cond. lever-magazine prob. diff.4.15.07.12.7-2.1-1.9
Pavlov. Cond. response bias4.35.48.72.9-2.0-1.8
Pavlov. Cond. lever latency0.10.10.30.60.0-0.1
Pavlov. Cond. magazine entry latency0.20.20.30.5-0.5-0.2
Pavlov. Cond. change in total contacts0.50.82.3-1.5-0.3-0.2
Pavlov. Cond. index score0.10.10.2-0.2-0.5-0.3
Pavlov. Cond. latency score0.10.10.2-0.1-0.4-0.3
Pavlov. Cond. lever contacts0.20.30.6-0.80.30.5
Pavlov. Cond. magazine entry number0.10.20.3-0.60.40.1
Pavlov. Cond. intertrial magazine entries0.30.40.70.8-0.3-0.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.1-0.5-0.3
Pavlov. Cond. response bias0.00.00.10.1-0.4-0.1
Time in closed arm before self-admin0.10.10.2-0.5-0.1-0.3
Time in closed arm after self-admin0.50.60.80.6-0.7-0.9
Time in open arm before self-admin0.00.10.10.3-0.00.2
Time in open arm after self-admin1.82.03.20.21.61.8
Bone: periosteal estimation0.00.00.1-0.1-0.3-0.1
Bone: periosteal perimeter0.40.61.61.3-0.5-0.2
Bone: post-yield work0.10.20.4-0.00.40.6
Progressive ratio test 1 active lever presses0.40.60.80.40.80.9
Progressive ratio test 1 breakpoint0.50.60.90.40.90.9
Progressive ratio test 1 inactive lever presses0.91.31.61.0-1.3-1.2
Progressive ratio test 2 active lever presses1.11.32.91.7-0.7-0.7
Progressive ratio test 2 breakpoint1.21.42.91.7-0.7-0.8
Progressive ratio test 2 inactive lever presses3.25.15.82.0-2.4-2.4
Incentive Sensitization - Responses1.82.53.11.8-1.5-1.5
Incentive Sensitization - Breakpoint2.02.63.11.8-1.5-1.6
Sum of active levers in priming session hrs 5-61.21.12.0-0.21.41.2
Progressive ratio1.62.64.6-2.11.41.1
Food seeking constrained by brief footshock0.60.71.71.3-0.3-0.4
Seeking ratio, punishment vs. effort2.73.97.32.7-1.6-1.4
Retroperitoneal fat weight0.41.64.8-2.20.10.0
Reaction time number correct0.20.41.01.0-0.4-0.2
Reaction time mean minus median0.00.10.1-0.20.30.3
Reaction time mean minus median AUC0.20.40.6-0.40.70.8
Reaction time num false alarms0.10.20.30.60.30.3
Reaction time num false alarms AUC0.20.40.60.20.70.7
Reaction time trials correct on left0.20.41.01.0-0.4-0.2
Reaction time trials on left0.20.41.01.0-0.3-0.2
Reaction time mean0.10.20.30.20.60.5
Reaction time mean AUC0.30.50.80.30.90.9
Median of all reaction times0.20.30.40.40.60.6
Reaction time omissions0.50.71.10.11.01.1
Reaction time false alarm rate0.10.20.3-0.10.50.5
Reaction time premature initiation rate0.91.23.3-1.80.50.5
Reaction time premature initiations0.20.41.2-1.10.10.2
Std. dev. reaction times0.50.91.3-0.31.11.1
Reaction time trials completed0.20.41.01.0-0.3-0.2
Reaction time trials AUC0.30.51.41.2-0.4-0.2
Run reversals in cocaine runway, females1.31.32.51.6-1.0-0.6
Run reversals in cocaine runway, males1.01.01.3-1.1-1.0-0.9
Latency to leave start box in cocaine runway0.10.10.4-0.6-0.2-0.0
Latency to leave start box in cocaine runway, F1.11.21.9-0.7-1.4-1.1
Latency to leave start box in cocaine runway, M0.50.50.60.40.80.8
Std. dev. time between licks in bursts4.15.66.22.5-2.3-2.3
Total sessions with >9 infusions1.11.31.41.2-1.1-1.1
Short access day 1 total inactive lever presses2.02.76.82.6-0.9-0.7
Short access day 10 total inactive lever presses1.33.25.1-0.6-2.1-2.3
Short access day 1 total infusions1.31.85.12.2-0.3-0.4
Short access day 10 total infusions1.21.54.52.1-0.2-0.0
Short access total infusions1.72.26.42.5-0.1-0.1
Short access day 1 locomotion0.50.71.01.0-0.5-0.9
Short access day 10 total locomotion0.20.30.60.40.70.5
Short access total locomotion0.30.40.50.40.70.6
One hour access (0.3 mA shock)0.70.82.01.40.50.4
Compulsive drug intake0.70.81.10.91.00.8
One hour access (shock baseline)0.40.70.90.9-0.8-0.7
Social response proportion0.10.20.4-0.60.10.3
Social responses0.40.60.8-0.90.60.8
Social time1.62.13.00.7-1.7-1.7
Soleus weight1.44.112.3-3.50.10.1
Bone: stiffness0.10.10.2-0.5-0.00.3
Tibialis anterior weight0.31.01.5-0.3-1.2-1.2
Time to tail flick, vehicle, before self-admin0.60.61.6-1.30.30.3
Time to tail flick, vehicle, after self-admin0.50.60.8-0.7-0.8-0.9
Time to tail flick, test, before self-admin1.81.82.9-0.31.61.7
Time to tail flick, test, after self-admin0.30.30.40.2-0.6-0.6
Delta time to tail flick, vehicle, before/after SA0.50.50.80.4-0.7-0.9
Delta time to tail flick, test, before/after SA0.60.60.80.6-0.8-0.9
Tibia length2.05.516.3-4.00.30.2
Ambulatory time before self-admin1.21.81.91.4-1.3-1.3
Ambulatory time after self-admin0.10.10.20.4-0.0-0.2
Bone: tissue strength1.51.53.0-1.7-0.8-0.9
Total heroin consumption1.31.51.8-1.4-1.1-1.2
Bone: trabecular number1.32.22.71.21.61.6
Bone: trabecular spacing2.02.63.0-1.5-1.6-1.7
Bone: trabecular thickness1.41.72.7-0.01.61.7
Bone: trabecular tissue density0.20.30.7-0.80.30.5
Water consumed over 24 hours1.01.42.0-0.2-1.4-1.4
Number of responses in last shaping day2.22.43.60.4-1.8-1.9