Ost4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Ost4 0.05 0.05 9.5e-03 0.02 0.01 0 0.02 2.8e-03 2.4e-02 8.7e-02 6.7e-03
2 NAcc isoform ratio NM_001134690.1 0.01 0.01 5.4e-03 0.01 0.01 0.01 0.01 4.5e-03 2.5e-02 1.2e-02 1.5e-02
3 IL isoform ratio NM_001134690.1 1.1 0 7.1e-03 -0 0.02 0.04 NA 4.3e-01 9.2e-02 3.2e-02 NA

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.52.74.4-2.1-1.90.0
Area under the delay curve0.00.00.0-0.00.10.0
BMI with tail0.82.97.62.81.00.0
BMI without tail0.52.65.82.41.40.0
Body weight1.77.311.13.33.30.0
Weight adjusted by age0.00.10.30.4-0.50.0
Bone surface0.20.50.8-0.8-0.90.0
Bone volume0.51.02.1-1.4-0.90.0
Breakpoint value in progressive ratio session0.30.50.8-0.9-0.80.0
Number of licking bursts0.20.51.31.20.40.0
Context. condit. distance diff. score0.10.10.2-0.5-0.30.0
Locomotion velocity, session 10.40.50.80.90.90.0
Locomotion distance, session 10.10.10.2-0.5-0.30.0
Locomotion velocity, session 20.10.10.20.20.40.0
Locomotion distance, session 20.10.10.30.50.30.0
Locomotion velocity, session 30.40.51.4-0.3-1.20.0
Locomotion distance, session 30.10.10.20.2-0.50.0
Stereotopy head waving bouts, day 31.61.93.5-1.5-1.90.0
Stereotopy head waving duration, day 30.40.40.7-0.8-0.80.0
Locomotion velocity, session 70.00.00.1-0.0-0.30.0
Locomotion distance, session 70.50.61.21.10.80.0
Stereotopy head waving bouts, day 70.10.10.10.2-0.40.0
Stereotopy head waving duration, day 70.50.61.4-0.7-1.20.0
Locomotion velocity, session 80.30.30.7-0.8-0.50.0
Locomotion distance, session 80.10.10.3-0.5-0.40.0
Degree of sensitization distance0.80.81.51.01.20.0
Degree of sensitization stereotypy0.10.10.40.60.00.0
Conditioned locomotion2.73.25.1-2.1-2.20.0
Cocaine response after cond. corrected0.00.00.1-0.3-0.10.0
Cocaine response after cond. not corrected0.30.50.7-0.8-0.80.0
Cocaine response before conditioning2.12.64.2-1.9-2.10.0
Saline control response0.81.12.1-1.1-1.40.0
Bone: connectivity density1.11.83.1-1.5-1.80.0
Bone: cortical apparent density0.10.10.2-0.3-0.40.0
Bone: cortical area0.00.00.00.10.10.0
Bone: cortical porosity1.81.93.0-1.7-1.70.0
Bone: cortical porosity1.41.52.6-1.6-1.40.0
Bone: cortical thickness0.10.20.30.40.60.0
Bone: cortical thickness0.20.30.5-0.7-0.60.0
Bone: cortical tissue density0.00.00.1-0.2-0.30.0
Condit. Reinf. active minus inactive responses1.01.21.81.41.30.0
Condit. Reinf. active-inactive response ratio1.11.22.01.21.40.0
Condit. Reinf. active responses0.00.00.00.20.10.0
Condit. Reinf. inactive responses0.70.91.6-1.1-1.30.0
Incentive salience index mean0.10.10.30.30.50.0
Condit. Reinf. lever presses0.30.51.3-1.1-0.50.0
Condit. Reinf. active minus inactive responses2.03.18.5-1.0-2.90.0
Condit. Reinf. active-inactive response ratio1.11.84.8-0.7-2.20.0
Condit. Reinf. active responses1.42.05.3-0.8-2.30.0
Condit. Reinf. inactive responses0.10.10.2-0.4-0.50.0
Condit. Reinf. lever presses1.21.73.6-1.3-1.90.0
Condit. Reinf. lever reinforcers received1.42.05.4-0.7-2.30.0
Conditioned reinforcement - actives1.14.69.1-3.0-2.20.0
Conditioned reinforcement - inactives1.43.87.2-2.7-2.10.0
Conditioned locomotion0.91.42.5-1.6-1.30.0
Patch foraging indifference point 0 sec0.30.92.01.40.80.0
Patch foraging indifference point AUC0.10.10.30.3-0.60.0
Delay disc. indifference point, 0s delay1.61.84.51.02.10.0
Delay disc. indifference point, 16s delay0.00.00.00.1-0.20.0
Delay disc. indifference point, 2s delay0.20.20.40.30.70.0
Delay disc. indifference point, 24s delay0.50.82.2-1.5-0.40.0
Delay disc. indifference point, 4s delay0.00.10.10.30.20.0
Delay disc. indifference point, 8s delay0.00.00.0-0.10.00.0
Indifference point function ln k0.20.71.9-1.4-0.50.0
Indifference point function log k0.20.71.9-1.4-0.50.0
Patch foraging total patch changes 0 sec0.30.92.21.50.70.0
Patch foraging total patch changes 12 sec0.91.22.41.51.10.0
Patch foraging total patch changes 18 sec0.40.92.41.50.60.0
Patch foraging total patch changes 24 sec0.20.82.11.50.60.0
Patch foraging total patch changes 6 sec1.01.64.22.00.80.0
Patch foraging time to switch 0 sec0.00.10.30.50.10.0
Patch foraging water rate 0 sec0.10.40.7-0.8-0.70.0
Patch foraging water rate 12 sec0.00.20.50.10.70.0
Patch foraging water rate 18 sec0.20.51.3-1.20.20.0
Patch foraging water rate 24 sec0.20.30.90.30.90.0
Patch foraging water rate 6 sec0.10.20.5-0.30.70.0
Seeking ratio, delayed vs. immediate footshock0.00.00.10.30.00.0
Distance traveled before self-admin0.10.10.4-0.60.20.0
Distance traveled after self-admin0.81.43.31.01.80.0
Extensor digitorum longus weight2.39.018.1-3.0-4.30.0
Bone: elastic displacement0.91.12.4-1.6-1.00.0
Bone: elastic work0.40.51.1-1.0-0.70.0
Bone: endosteal estimation0.00.10.2-0.5-0.10.0
Bone: endosteal perimeter0.00.00.00.00.10.0
Epididymis fat weight7.035.356.47.57.00.0
Delta time in closed arm before/after self-admin0.20.10.40.70.00.0
Delta time in open arm before/after self-admin0.00.00.1-0.1-0.30.0
Diff in mean of infusions in LGA sessions0.00.10.20.5-0.10.0
Delay discount exponential model param0.00.00.10.30.20.0
Extinction: sum of active levers before priming0.30.40.6-0.8-0.70.0
Active lever presses in extinction session 61.11.12.2-1.5-1.10.0
Bone: final force0.00.00.10.00.30.0
Bone: final moment0.00.00.10.00.40.0
Food consumed during 24 hour testing period0.00.00.10.2-0.30.0
Glucose0.30.51.21.10.60.0
Heart weight1.32.15.01.22.20.0
Delay discount hyperbolic model param0.00.00.00.00.00.0
Intermittent access intake day 1-15 change0.10.51.0-1.0-0.80.0
Intermittent access intake escalation0.00.20.4-0.6-0.40.0
Intermittent access intake escalation 20.00.00.1-0.3-0.20.0
Intermitt. access day 1 inactive lever presses0.11.43.0-1.1-1.70.0
Intermitt. access day 15 inactive lever presses0.42.45.9-1.1-2.40.0
Intermitt. access escalation Index0.92.87.12.71.10.0
Intermittent access day 1 total infusions1.23.75.5-2.4-2.40.0
Intermittent access day 15 total infusions1.02.44.2-2.1-1.70.0
Intermittent access terminal intake (last 3 days)2.03.55.8-2.4-2.20.0
Intermittent access total infusions3.23.86.7-2.6-2.20.0
Intermittent access day 1 locomotion1.32.43.7-1.9-1.90.0
Intermittent access day 15 total locomotion0.10.61.3-0.6-1.10.0
Intermittent access total locomotion1.21.42.3-1.5-1.40.0
Intermittent access standard deviation0.31.73.0-1.7-1.40.0
Left kidney weight0.00.10.2-0.40.40.0
Right kidney weight0.10.92.50.41.60.0
Cocaine induced anxiety0.00.00.1-0.1-0.30.0
Post-drug Anxiety1.21.42.21.41.50.0
Baseline Anxiety1.62.64.02.02.00.0
Tail length0.10.72.20.01.50.0
Length with tail0.62.87.90.72.80.0
Length without tail0.21.02.70.41.60.0
Times rat made contact with spout0.70.81.7-0.9-1.30.0
Lifetime Intake3.44.37.9-2.8-2.20.0
Liver weight, left1.93.47.21.72.70.0
Liver weight, right3.56.112.82.43.60.0
Locomotor activity0.30.50.91.00.80.0
Locomotor testing distance0.10.20.40.7-0.20.0
Locomotor testing rearing0.20.71.7-0.6-1.30.0
Locomotion in novel chamber0.00.00.10.20.20.0
Locomotion in novel chamber post-restriction0.82.34.02.01.70.0
Fecal boli incidents, locomotor time 10.41.02.2-1.5-0.80.0
Change in fecal boli incidents, locomotor task2.93.15.81.92.40.0
Time >=10cm from walls, locomotor time 10.20.20.6-0.70.20.0
Bouts of movement, locomotor time 10.30.31.00.3-1.00.0
Total resting periods, locomotor time 10.30.30.90.3-1.00.0
Rest time, locomotor task time 10.20.30.50.60.70.0
Distance moved, locomotor task time 10.10.20.50.10.70.0
Vertical activity count, locomotor time 10.00.10.3-0.00.60.0
Time >=10cm from walls, locomotor time 20.30.82.0-1.4-0.70.0
Bouts of movement, locomotor time 20.10.40.91.00.40.0
Total resting periods, locomotor time 20.10.41.11.00.10.0
Rest time, locomotor task time 20.10.20.40.3-0.70.0
Distance moved, locomotor task time 20.10.10.3-0.30.50.0
Vertical activity count, locomotor time 20.10.20.4-0.60.60.0
Light reinforcement 10.31.13.1-0.6-1.80.0
Light reinforcement 20.51.12.2-1.0-1.50.0
Bone: marrow area0.00.10.2-0.5-0.10.0
Bone: maximum diameter0.00.00.0-0.0-0.10.0
Bone: maximum force0.00.00.0-0.20.00.0
Bone: maximum moment0.00.00.1-0.2-0.00.0
Mean time between licks in bursts0.32.03.71.51.90.0
Mean num. licks in bursts0.30.81.8-1.3-0.80.0
Cd content in liver0.00.00.10.30.00.0
Co content in liver2.73.25.0-2.2-2.10.0
Cu content in liver0.20.20.5-0.7-0.40.0
Fe content in liver1.01.22.5-1.6-1.00.0
K content in liver0.30.30.60.50.80.0
Mg content in liver0.20.20.50.40.70.0
Mn content in liver0.60.71.81.30.60.0
Na content in liver0.91.02.6-1.6-0.60.0
Rb content in liver0.20.20.30.40.60.0
Se content in liver0.10.10.20.50.00.0
Sr content in liver0.10.10.1-0.30.30.0
Zn content in liver0.91.12.31.01.50.0
Bone: minimum diameter0.40.81.31.01.10.0
Time in familiar zone, hab. session 10.70.81.60.91.30.0
Time in novel zone, hab. session 10.10.10.20.4-0.00.0
Total zone transitions, hab. session 10.10.10.2-0.4-0.40.0
Total locomotion distance, hab. session 10.20.30.8-0.9-0.20.0
Locomotion velocity, hab. session 10.50.81.7-1.3-0.80.0
Time in familiar zone, hab. session 20.10.10.40.6-0.10.0
Time in novel zone, hab. session 20.20.20.7-0.00.80.0
Total zone transitions, hab. session 20.10.20.40.60.40.0
Total locomotion distance, hab. session 20.10.10.40.60.10.0
Locomotion velocity, hab. session 20.10.10.20.5-0.20.0
Novel to familiar place preference ratio0.50.61.20.81.10.0
Novelty place preference0.70.91.71.01.30.0
Time in novel zone, NPP test0.70.91.71.01.30.0
Total zone transitions, NPP test0.60.91.6-1.0-1.30.0
Total locomotion distance, NPP test0.91.32.6-1.1-1.60.0
Locomotion velocity, NPP test1.21.83.6-1.3-1.90.0
Intraocular pressure3.25.29.12.63.00.0
Delta distance traveled before/after self-admin1.51.73.21.81.40.0
Delta ambulatory time before/after self-admin0.30.51.11.00.70.0
Parametrial fat weight10.725.244.16.65.60.0
Pavlov. Cond. lever latency0.30.40.60.80.80.0
Pavlov. Cond. magazine entry latency0.00.00.00.10.10.0
Pavlov. Cond. change in total contacts0.00.00.0-0.20.20.0
Pavlov. Cond. index score0.00.00.1-0.2-0.20.0
Pavlov. Cond. latency score0.00.00.0-0.1-0.10.0
Pavlov. Cond. lever contacts0.20.30.6-0.8-0.40.0
Pavlov. Cond. magazine entry number0.00.00.00.10.20.0
Pavlov. Cond. intertrial magazine entries1.61.93.2-1.8-1.60.0
Pavlov. Cond. lever-magazine prob. diff.0.20.30.5-0.7-0.60.0
Pavlov. Cond. response bias0.40.40.9-0.9-0.70.0
Pavlov. Cond. lever latency0.81.12.30.91.50.0
Pavlov. Cond. magazine entry latency0.10.10.30.1-0.60.0
Pavlov. Cond. change in total contacts0.20.51.4-0.2-1.20.0
Pavlov. Cond. index score0.50.71.8-0.6-1.30.0
Pavlov. Cond. latency score0.50.81.9-0.6-1.40.0
Pavlov. Cond. lever contacts0.50.71.6-0.7-1.30.0
Pavlov. Cond. magazine entry number0.10.10.2-0.30.40.0
Pavlov. Cond. intertrial magazine entries1.43.15.02.12.20.0
Pavlov. Cond. lever-magazine prob. diff.0.20.41.1-0.2-1.00.0
Pavlov. Cond. response bias0.81.12.5-0.9-1.60.0
Time in closed arm before self-admin0.10.10.20.40.30.0
Time in closed arm after self-admin0.30.30.70.80.40.0
Time in open arm before self-admin0.00.00.00.2-0.10.0
Time in open arm after self-admin0.30.30.7-0.5-0.90.0
Bone: periosteal estimation0.00.10.3-0.6-0.20.0
Bone: periosteal perimeter0.00.00.0-0.0-0.00.0
Bone: post-yield work0.91.62.5-1.5-1.60.0
Progressive ratio test 1 active lever presses1.32.34.9-2.2-1.40.0
Progressive ratio test 1 breakpoint1.42.35.0-2.2-1.40.0
Progressive ratio test 1 inactive lever presses1.74.47.8-2.8-2.30.0
Progressive ratio test 2 active lever presses1.31.84.4-2.1-0.90.0
Progressive ratio test 2 breakpoint1.31.64.2-2.0-0.80.0
Progressive ratio test 2 inactive lever presses0.92.75.1-2.3-1.80.0
Incentive Sensitization - Responses0.30.82.0-1.4-0.50.0
Incentive Sensitization - Breakpoint0.20.51.4-1.2-0.40.0
Sum of active levers in priming session hrs 5-60.10.10.40.6-0.10.0
Progressive ratio0.00.10.20.4-0.00.0
Food seeking constrained by brief footshock5.36.612.7-3.6-2.70.0
Seeking ratio, punishment vs. effort0.41.02.4-1.6-0.70.0
Retroperitoneal fat weight18.281.6146.112.19.90.0
Reaction time number correct0.00.20.5-0.3-0.70.0
Reaction time mean minus median0.00.20.5-0.4-0.70.0
Reaction time mean minus median AUC0.00.00.10.0-0.20.0
Reaction time num false alarms0.81.43.41.80.90.0
Reaction time num false alarms AUC0.71.53.81.90.90.0
Reaction time trials correct on left0.00.20.5-0.3-0.70.0
Reaction time trials on left0.10.20.5-0.3-0.70.0
Reaction time mean0.20.41.1-0.11.10.0
Reaction time mean AUC0.10.31.0-0.11.00.0
Median of all reaction times0.40.61.70.01.30.0
Reaction time omissions0.00.00.10.3-0.10.0
Reaction time false alarm rate1.31.73.82.01.20.0
Reaction time premature initiation rate0.00.00.10.4-0.10.0
Reaction time premature initiations0.00.10.10.2-0.40.0
Std. dev. reaction times0.00.10.2-0.00.40.0
Reaction time trials completed0.10.20.5-0.3-0.70.0
Reaction time trials AUC0.10.30.8-0.3-0.90.0
Run reversals in cocaine runway, females0.20.20.7-0.80.10.0
Run reversals in cocaine runway, males0.40.51.2-1.1-0.40.0
Latency to leave start box in cocaine runway0.40.50.9-0.9-0.80.0
Latency to leave start box in cocaine runway, F0.10.20.3-0.4-0.60.0
Latency to leave start box in cocaine runway, M0.30.30.7-0.9-0.30.0
Std. dev. time between licks in bursts0.40.71.61.30.80.0
Total sessions with >9 infusions1.72.14.7-2.2-1.30.0
Short access day 1 total inactive lever presses2.95.89.6-3.1-2.80.0
Short access day 10 total inactive lever presses0.32.04.9-1.0-2.20.0
Short access day 1 total infusions2.34.57.4-2.7-2.50.0
Short access day 10 total infusions2.13.57.7-2.8-1.70.0
Short access total infusions1.82.55.2-2.3-1.50.0
Short access day 1 locomotion2.03.35.4-2.1-2.30.0
Short access day 10 total locomotion0.51.83.7-1.3-1.90.0
Short access total locomotion0.60.91.8-1.3-0.90.0
One hour access (0.3 mA shock)2.22.65.6-2.4-1.50.0
Compulsive drug intake1.11.62.61.61.50.0
One hour access (shock baseline)1.54.08.1-2.8-2.00.0
Social response proportion0.30.41.2-0.21.10.0
Social responses0.30.40.70.80.80.0
Social time0.00.10.2-0.10.40.0
Soleus weight2.36.912.2-2.9-3.50.0
Bone: stiffness0.00.00.10.3-0.10.0
Tibialis anterior weight1.44.711.0-1.8-3.30.0
Time to tail flick, vehicle, before self-admin0.10.10.20.30.40.0
Time to tail flick, vehicle, after self-admin1.12.33.81.91.80.0
Time to tail flick, test, before self-admin0.10.10.2-0.4-0.40.0
Time to tail flick, test, after self-admin0.50.51.2-1.1-0.60.0
Delta time to tail flick, vehicle, before/after SA0.30.30.90.90.40.0
Delta time to tail flick, test, before/after SA1.11.42.7-1.6-1.20.0
Tibia length1.54.110.11.53.20.0
Ambulatory time before self-admin0.10.20.5-0.7-0.10.0
Ambulatory time after self-admin0.40.71.80.51.30.0
Bone: tissue strength0.40.40.80.70.90.0
Total heroin consumption1.82.13.3-1.8-1.70.0
Bone: trabecular number1.12.04.4-2.1-1.30.0
Bone: trabecular spacing0.50.81.21.01.10.0
Bone: trabecular thickness0.10.20.5-0.70.00.0
Bone: trabecular tissue density0.30.50.7-0.8-0.80.0
Water consumed over 24 hours0.00.10.20.4-0.30.0
Number of responses in last shaping day0.60.82.4-1.5-0.30.0