Osm

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Osm 0.03 0.02 2.3e-03 0.03 0.02 0.03 0.03 8.3e-05 7.1e-04 2.2e-04 9.6e-05
2 Brain alternative TSS XM_006251200.3 0.04 0.04 7.3e-03 0.03 0.02 0.02 0.03 1.1e-03 7.5e-03 4.7e-03 1.2e-03
3 Adipose gene expression Osm 0.04 0.03 2.1e-04 0.01 0.02 0.02 0.01 6.5e-02 1.3e-03 5.5e-03 1.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.11.61.0-0.8-1.3
Area under the delay curve9.610.110.6-3.33.23.1
BMI with tail0.51.63.4-0.80.91.9
BMI without tail0.00.10.1-0.20.10.3
Body weight1.25.25.8-2.32.42.1
Weight adjusted by age0.60.60.8-0.70.80.9
Bone surface0.10.20.4-0.40.70.4
Bone volume0.00.00.1-0.10.3-0.1
Breakpoint value in progressive ratio session0.30.30.6-0.80.10.5
Number of licking bursts1.11.22.2-1.51.20.2
Context. condit. distance diff. score2.53.03.71.9-1.9-1.3
Locomotion velocity, session 10.10.10.30.2-0.10.6
Locomotion distance, session 12.02.63.81.9-1.6-1.2
Locomotion velocity, session 20.00.00.1-0.1-0.30.0
Locomotion distance, session 21.21.72.61.6-1.5-0.6
Locomotion velocity, session 31.21.42.21.5-1.2-0.7
Locomotion distance, session 30.60.71.1-0.60.81.1
Stereotopy head waving bouts, day 31.92.22.71.6-1.4-1.4
Stereotopy head waving duration, day 33.03.64.72.2-2.0-1.5
Locomotion velocity, session 70.00.10.1-0.00.30.3
Locomotion distance, session 70.50.61.21.1-0.7-0.2
Stereotopy head waving bouts, day 70.00.10.20.00.00.4
Stereotopy head waving duration, day 70.10.20.3-0.30.40.5
Locomotion velocity, session 81.01.21.71.0-1.3-0.9
Locomotion distance, session 87.210.612.83.6-3.6-2.5
Degree of sensitization distance5.45.45.92.4-2.4-2.1
Degree of sensitization stereotypy0.50.50.6-0.80.70.7
Conditioned locomotion0.30.40.60.8-0.6-0.3
Cocaine response after cond. corrected0.60.71.1-0.71.10.7
Cocaine response after cond. not corrected1.11.21.9-1.11.40.7
Cocaine response before conditioning0.00.00.1-0.0-0.1-0.4
Saline control response0.91.22.21.5-1.1-0.2
Bone: connectivity density0.50.71.01.0-0.7-0.9
Bone: cortical apparent density0.00.00.1-0.20.10.3
Bone: cortical area2.13.24.2-1.82.01.4
Bone: cortical porosity0.20.20.4-0.60.6-0.0
Bone: cortical porosity0.10.10.1-0.30.3-0.1
Bone: cortical thickness1.22.02.9-1.41.71.1
Bone: cortical thickness0.30.30.60.8-0.5-0.4
Bone: cortical tissue density0.10.10.1-0.30.10.4
Condit. Reinf. active minus inactive responses0.30.40.90.20.40.9
Condit. Reinf. active-inactive response ratio0.30.30.90.3-0.01.0
Condit. Reinf. active responses0.10.20.30.60.00.4
Condit. Reinf. inactive responses0.10.10.30.1-0.0-0.5
Incentive salience index mean0.70.81.6-0.30.91.3
Condit. Reinf. lever presses0.40.50.8-0.30.80.9
Condit. Reinf. active minus inactive responses0.81.01.21.1-1.0-0.9
Condit. Reinf. active-inactive response ratio0.10.10.20.20.10.4
Condit. Reinf. active responses1.82.53.41.8-1.7-1.1
Condit. Reinf. inactive responses2.43.03.51.9-1.9-1.4
Condit. Reinf. lever presses0.50.71.11.0-0.9-0.5
Condit. Reinf. lever reinforcers received1.52.13.11.8-1.5-0.9
Conditioned reinforcement - actives2.22.22.8-1.21.71.6
Conditioned reinforcement - inactives2.83.23.8-1.61.91.8
Conditioned locomotion0.30.40.6-0.70.70.3
Patch foraging indifference point 0 sec0.00.10.2-0.40.20.1
Patch foraging indifference point AUC0.20.20.50.5-0.7-0.1
Delay disc. indifference point, 0s delay6.67.28.7-2.52.63.0
Delay disc. indifference point, 16s delay6.76.77.2-2.72.52.6
Delay disc. indifference point, 2s delay5.25.76.7-2.32.62.3
Delay disc. indifference point, 24s delay5.65.56.3-2.12.42.5
Delay disc. indifference point, 4s delay5.05.26.3-2.32.52.0
Delay disc. indifference point, 8s delay2.52.53.1-1.81.41.7
Indifference point function ln k0.30.40.80.5-0.0-0.9
Indifference point function log k0.30.40.80.5-0.0-0.9
Patch foraging total patch changes 0 sec0.10.20.4-0.60.40.3
Patch foraging total patch changes 12 sec0.00.00.1-0.3-0.00.2
Patch foraging total patch changes 18 sec0.91.21.6-1.20.71.3
Patch foraging total patch changes 24 sec1.72.03.41.6-1.8-0.5
Patch foraging total patch changes 6 sec0.00.10.1-0.30.10.3
Patch foraging time to switch 0 sec0.00.00.1-0.3-0.10.1
Patch foraging water rate 0 sec0.10.20.2-0.50.50.3
Patch foraging water rate 12 sec0.10.20.30.5-0.2-0.4
Patch foraging water rate 18 sec2.43.24.91.7-1.4-2.2
Patch foraging water rate 24 sec0.20.20.50.3-0.3-0.7
Patch foraging water rate 6 sec0.20.30.70.4-0.0-0.8
Seeking ratio, delayed vs. immediate footshock0.20.20.30.1-0.5-0.6
Distance traveled before self-admin0.00.00.1-0.1-0.3-0.1
Distance traveled after self-admin0.30.30.4-0.70.20.7
Extensor digitorum longus weight1.97.610.8-2.83.32.1
Bone: elastic displacement0.70.81.50.7-0.7-1.2
Bone: elastic work0.40.51.40.2-0.2-1.2
Bone: endosteal estimation0.00.00.0-0.10.1-0.2
Bone: endosteal perimeter0.61.11.4-1.21.20.8
Epididymis fat weight0.00.10.3-0.50.1-0.1
Delta time in closed arm before/after self-admin5.65.57.02.3-2.7-2.0
Delta time in open arm before/after self-admin6.96.68.4-2.92.32.5
Diff in mean of infusions in LGA sessions0.30.40.6-0.6-0.40.8
Delay discount exponential model param8.99.39.73.1-3.0-3.0
Extinction: sum of active levers before priming1.81.82.8-1.21.11.7
Active lever presses in extinction session 61.51.52.6-1.11.60.7
Bone: final force0.10.10.2-0.40.40.4
Bone: final moment0.10.20.4-0.60.50.2
Food consumed during 24 hour testing period0.10.10.2-0.50.30.3
Glucose18.227.529.3-5.44.95.4
Heart weight0.20.30.40.7-0.6-0.2
Delay discount hyperbolic model param9.19.79.83.1-3.1-3.1
Intermittent access intake day 1-15 change1.31.21.9-1.00.91.4
Intermittent access intake escalation0.70.71.1-0.80.61.0
Intermittent access intake escalation 20.00.00.1-0.3-0.00.0
Intermitt. access day 1 inactive lever presses0.60.71.51.2-0.6-0.4
Intermitt. access day 15 inactive lever presses0.80.91.5-0.60.91.2
Intermitt. access escalation Index0.10.10.20.4-0.30.3
Intermittent access day 1 total infusions0.60.71.0-1.00.60.9
Intermittent access day 15 total infusions2.32.63.1-1.61.41.8
Intermittent access terminal intake (last 3 days)0.80.91.2-1.10.71.0
Intermittent access total infusions0.91.01.4-1.20.90.9
Intermittent access day 1 locomotion0.60.61.00.7-1.0-0.6
Intermittent access day 15 total locomotion2.83.03.8-1.91.41.9
Intermittent access total locomotion1.01.21.6-1.30.61.2
Intermittent access standard deviation0.40.40.50.7-0.7-0.5
Left kidney weight0.71.92.81.3-1.1-1.7
Right kidney weight1.02.73.11.7-1.5-1.8
Cocaine induced anxiety0.60.71.1-1.10.70.8
Post-drug Anxiety0.60.70.9-0.90.80.7
Baseline Anxiety0.91.01.2-0.91.10.9
Tail length0.20.60.7-0.80.9-0.7
Length with tail0.52.03.0-1.71.70.1
Length without tail1.12.43.0-1.71.71.1
Times rat made contact with spout0.20.30.4-0.60.20.6
Lifetime Intake0.70.81.0-1.00.90.7
Liver weight, left5.28.48.72.9-2.8-3.0
Liver weight, right4.88.09.73.1-2.7-2.6
Locomotor activity0.60.91.6-1.21.00.5
Locomotor testing distance0.20.30.5-0.60.7-0.1
Locomotor testing rearing1.62.53.5-1.61.91.2
Locomotion in novel chamber0.60.70.91.0-0.8-0.7
Locomotion in novel chamber post-restriction0.80.91.61.1-1.3-0.1
Fecal boli incidents, locomotor time 10.50.60.70.8-0.8-0.7
Change in fecal boli incidents, locomotor task0.10.10.10.2-0.4-0.1
Time >=10cm from walls, locomotor time 10.10.10.1-0.0-0.30.4
Bouts of movement, locomotor time 10.40.51.1-0.20.61.0
Total resting periods, locomotor time 10.80.91.9-0.40.81.4
Rest time, locomotor task time 10.10.10.20.40.10.3
Distance moved, locomotor task time 10.20.20.4-0.3-0.2-0.6
Vertical activity count, locomotor time 10.20.20.2-0.5-0.3-0.4
Time >=10cm from walls, locomotor time 20.10.10.30.1-0.5-0.3
Bouts of movement, locomotor time 20.10.10.20.4-0.20.2
Total resting periods, locomotor time 20.10.10.20.4-0.10.5
Rest time, locomotor task time 20.40.40.90.9-0.5-0.4
Distance moved, locomotor task time 20.00.00.1-0.2-0.2-0.2
Vertical activity count, locomotor time 20.10.10.3-0.60.10.1
Light reinforcement 10.00.00.10.30.20.1
Light reinforcement 20.20.30.40.4-0.5-0.6
Bone: marrow area0.00.00.0-0.10.1-0.2
Bone: maximum diameter3.56.37.2-2.62.72.2
Bone: maximum force0.00.10.1-0.40.2-0.1
Bone: maximum moment0.10.20.3-0.60.3-0.3
Mean time between licks in bursts0.00.10.10.1-0.3-0.2
Mean num. licks in bursts0.60.71.01.0-1.00.2
Cd content in liver1.21.31.71.3-1.2-0.9
Co content in liver0.10.20.3-0.10.40.5
Cu content in liver0.00.00.10.10.20.3
Fe content in liver0.10.20.40.3-0.6-0.1
K content in liver0.40.40.9-0.40.90.4
Mg content in liver1.51.62.3-1.11.51.1
Mn content in liver0.00.10.10.10.2-0.3
Na content in liver7.07.48.1-2.62.82.7
Rb content in liver0.91.11.5-1.01.20.9
Se content in liver1.21.52.1-1.31.50.7
Sr content in liver1.21.11.7-1.30.90.9
Zn content in liver0.10.20.3-0.40.2-0.6
Bone: minimum diameter0.10.20.40.3-0.3-0.6
Time in familiar zone, hab. session 10.50.50.80.5-0.9-0.7
Time in novel zone, hab. session 10.30.20.5-0.50.70.0
Total zone transitions, hab. session 10.20.30.40.6-0.6-0.3
Total locomotion distance, hab. session 10.00.00.00.1-0.00.1
Locomotion velocity, hab. session 10.10.10.20.4-0.20.2
Time in familiar zone, hab. session 23.23.34.31.8-2.1-1.4
Time in novel zone, hab. session 22.42.43.0-1.71.71.0
Total zone transitions, hab. session 20.10.10.3-0.20.30.5
Total locomotion distance, hab. session 20.40.60.7-0.70.70.8
Locomotion velocity, hab. session 20.70.91.1-0.90.91.0
Novel to familiar place preference ratio2.72.84.1-1.31.62.0
Novelty place preference2.32.43.3-1.21.51.8
Time in novel zone, NPP test1.92.02.7-1.11.41.6
Total zone transitions, NPP test0.30.50.80.9-0.6-0.5
Total locomotion distance, NPP test0.00.00.10.3-0.00.1
Locomotion velocity, NPP test0.10.10.20.00.30.5
Intraocular pressure0.30.40.8-0.50.50.9
Delta distance traveled before/after self-admin0.60.70.8-0.70.80.9
Delta ambulatory time before/after self-admin0.10.10.1-0.20.30.4
Parametrial fat weight1.93.76.2-1.41.72.5
Pavlov. Cond. lever latency0.40.50.7-0.80.70.5
Pavlov. Cond. magazine entry latency1.01.31.51.2-1.2-0.9
Pavlov. Cond. change in total contacts1.11.21.4-1.01.01.2
Pavlov. Cond. index score1.11.41.91.4-1.3-0.8
Pavlov. Cond. latency score1.11.41.81.3-1.3-0.9
Pavlov. Cond. lever contacts0.50.50.70.8-0.8-0.5
Pavlov. Cond. magazine entry number0.91.11.4-1.21.20.6
Pavlov. Cond. intertrial magazine entries0.10.10.20.40.2-0.4
Pavlov. Cond. lever-magazine prob. diff.1.31.62.01.4-1.4-0.9
Pavlov. Cond. response bias0.20.20.30.6-0.5-0.2
Pavlov. Cond. lever latency1.21.62.5-1.41.60.6
Pavlov. Cond. magazine entry latency0.10.10.2-0.40.30.1
Pavlov. Cond. change in total contacts0.40.50.80.8-0.9-0.4
Pavlov. Cond. index score0.60.71.10.9-1.0-0.5
Pavlov. Cond. latency score0.60.81.10.9-1.1-0.6
Pavlov. Cond. lever contacts1.42.02.91.6-1.7-0.7
Pavlov. Cond. magazine entry number0.10.10.20.5-0.2-0.1
Pavlov. Cond. intertrial magazine entries0.10.20.40.6-0.3-0.2
Pavlov. Cond. lever-magazine prob. diff.0.60.81.10.9-1.1-0.6
Pavlov. Cond. response bias0.40.51.00.7-1.0-0.3
Time in closed arm before self-admin0.30.30.60.3-0.5-0.8
Time in closed arm after self-admin4.95.05.82.0-2.4-2.3
Time in open arm before self-admin0.20.20.50.7-0.1-0.3
Time in open arm after self-admin1.71.93.0-1.21.11.7
Bone: periosteal estimation0.51.01.3-1.11.20.6
Bone: periosteal perimeter2.13.54.1-1.92.01.6
Bone: post-yield work0.20.30.7-0.80.4-0.1
Progressive ratio test 1 active lever presses2.02.12.4-1.31.41.6
Progressive ratio test 1 breakpoint1.41.51.9-1.01.21.4
Progressive ratio test 1 inactive lever presses2.73.03.6-1.71.91.6
Progressive ratio test 2 active lever presses1.81.92.1-1.51.41.3
Progressive ratio test 2 breakpoint1.72.02.0-1.41.41.4
Progressive ratio test 2 inactive lever presses4.14.75.8-2.21.82.4
Incentive Sensitization - Responses1.61.61.8-1.31.21.2
Incentive Sensitization - Breakpoint1.61.61.8-1.41.31.2
Sum of active levers in priming session hrs 5-61.31.31.6-1.11.31.0
Progressive ratio0.40.51.2-1.10.60.2
Food seeking constrained by brief footshock2.63.24.5-1.92.11.1
Seeking ratio, punishment vs. effort0.20.20.50.00.70.4
Retroperitoneal fat weight0.10.41.1-0.20.31.0
Reaction time number correct0.20.30.60.1-0.5-0.8
Reaction time mean minus median0.10.10.3-0.50.10.3
Reaction time mean minus median AUC0.20.20.3-0.60.40.5
Reaction time num false alarms0.50.71.1-0.60.91.1
Reaction time num false alarms AUC0.30.40.6-0.40.80.7
Reaction time trials correct on left0.20.30.60.1-0.5-0.8
Reaction time trials on left0.20.30.70.2-0.5-0.8
Reaction time mean0.00.00.00.0-0.10.0
Reaction time mean AUC0.00.10.10.2-0.3-0.2
Median of all reaction times0.00.00.10.3-0.2-0.1
Reaction time omissions0.10.10.20.5-0.4-0.1
Reaction time false alarm rate0.50.71.0-0.50.91.0
Reaction time premature initiation rate5.06.68.93.0-2.6-2.0
Reaction time premature initiations3.65.16.12.5-2.3-2.0
Std. dev. reaction times0.20.20.3-0.50.30.5
Reaction time trials completed0.20.30.70.2-0.5-0.8
Reaction time trials AUC0.20.30.70.1-0.4-0.8
Run reversals in cocaine runway, females0.10.10.30.1-0.20.5
Run reversals in cocaine runway, males0.00.00.0-0.1-0.10.1
Latency to leave start box in cocaine runway0.20.20.3-0.00.40.6
Latency to leave start box in cocaine runway, F0.10.10.2-0.10.30.5
Latency to leave start box in cocaine runway, M0.00.00.10.10.20.2
Std. dev. time between licks in bursts0.60.70.80.8-0.9-0.9
Total sessions with >9 infusions0.10.10.20.5-0.1-0.3
Short access day 1 total inactive lever presses0.91.01.5-1.21.20.5
Short access day 10 total inactive lever presses1.21.31.91.4-1.1-1.0
Short access day 1 total infusions0.00.00.10.20.3-0.2
Short access day 10 total infusions0.10.10.20.2-0.3-0.4
Short access total infusions0.10.10.20.20.0-0.5
Short access day 1 locomotion2.83.03.51.4-1.9-1.9
Short access day 10 total locomotion2.22.53.51.4-1.9-1.4
Short access total locomotion6.06.36.82.4-2.6-2.5
One hour access (0.3 mA shock)0.70.81.0-1.00.80.9
Compulsive drug intake4.74.86.62.6-1.9-2.0
One hour access (shock baseline)4.95.76.9-2.62.32.2
Social response proportion0.40.40.7-0.80.50.5
Social responses0.50.71.2-1.10.60.6
Social time0.10.10.3-0.0-0.5-0.4
Soleus weight0.31.01.7-1.31.1-0.3
Bone: stiffness0.10.10.20.5-0.40.2
Tibialis anterior weight1.55.26.2-2.52.51.7
Time to tail flick, vehicle, before self-admin0.20.30.4-0.60.50.3
Time to tail flick, vehicle, after self-admin0.00.00.00.10.00.1
Time to tail flick, test, before self-admin1.00.91.21.1-0.7-1.1
Time to tail flick, test, after self-admin0.60.61.0-0.91.00.0
Delta time to tail flick, vehicle, before/after SA0.10.10.10.4-0.20.0
Delta time to tail flick, test, before/after SA0.80.71.0-1.00.90.6
Tibia length0.30.81.50.7-0.7-1.2
Ambulatory time before self-admin0.00.10.1-0.2-0.2-0.3
Ambulatory time after self-admin0.10.10.2-0.50.10.4
Bone: tissue strength0.60.61.40.1-0.6-1.2
Total heroin consumption0.10.20.40.1-0.6-0.3
Bone: trabecular number0.40.61.00.7-0.5-1.0
Bone: trabecular spacing1.11.51.9-1.41.11.2
Bone: trabecular thickness2.32.73.71.5-1.5-1.9
Bone: trabecular tissue density0.00.00.1-0.1-0.20.2
Water consumed over 24 hours0.00.10.1-0.3-0.2-0.2
Number of responses in last shaping day0.20.20.50.4-0.70.1