Onecut1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Onecut1 0.05 0.03 2.8e-04 0.01 0.01 0.01 0.01 2.5e-02 1.7e-02 1.5e-02 3.6e-02
2 LHb gene expression Onecut1 0.29 0.14 6.4e-04 0.2 0.12 0.09 0.14 1.7e-05 1.1e-03 3.1e-03 4.2e-04
3 Brain gene expression Onecut1 0.22 0.09 3.5e-12 0.11 0.13 0.15 0.15 8.7e-11 6.3e-12 1.1e-13 5.3e-14
4 NAcc gene expression Onecut1 0.02 0.01 7.6e-03 0 0.01 0 0 2.9e-01 3.8e-02 2.2e-01 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.91.00.40.20.1
Area under the delay curve0.81.22.21.41.5-0.90.1
BMI with tail0.62.15.6-0.71.3-2.40.7
BMI without tail0.31.43.20.81.8-1.30.6
Body weight0.94.18.30.72.9-2.31.5
Weight adjusted by age0.82.44.90.81.6-2.21.1
Bone surface0.30.72.40.30.4-1.6-0.3
Bone volume0.10.30.60.50.5-0.8-0.0
Breakpoint value in progressive ratio session0.30.61.50.50.6-1.20.5
Number of licking bursts0.72.24.11.81.2-2.00.2
Context. condit. distance diff. score0.10.10.10.20.3-0.30.3
Locomotion velocity, session 10.10.20.4-0.3-0.1-0.4-0.6
Locomotion distance, session 10.20.20.80.90.20.3-0.0
Locomotion velocity, session 20.40.50.70.70.7-0.8-0.5
Locomotion distance, session 20.40.61.91.40.5-0.1-0.6
Locomotion velocity, session 30.40.41.3-0.3-0.4-0.3-1.1
Locomotion distance, session 30.91.12.1-0.5-0.81.5-1.1
Stereotopy head waving bouts, day 30.60.71.8-1.3-1.0-0.20.4
Stereotopy head waving duration, day 30.81.02.2-1.5-1.3-0.20.0
Locomotion velocity, session 70.30.30.6-0.1-0.70.8-0.3
Locomotion distance, session 70.00.10.20.40.00.0-0.3
Stereotopy head waving bouts, day 70.91.12.6-0.4-1.1-0.4-1.6
Stereotopy head waving duration, day 71.31.64.3-0.3-1.3-0.6-2.1
Locomotion velocity, session 81.11.33.51.0-0.3-0.9-1.9
Locomotion distance, session 80.40.61.41.20.6-0.6-0.4
Degree of sensitization distance0.70.81.11.00.6-1.00.7
Degree of sensitization stereotypy0.70.72.3-0.0-0.6-0.5-1.5
Conditioned locomotion1.21.43.00.61.50.51.7
Cocaine response after cond. corrected0.91.42.9-1.7-0.6-1.5-0.3
Cocaine response after cond. not corrected0.71.13.0-1.10.0-1.70.4
Cocaine response before conditioning3.13.75.82.32.4-1.31.4
Saline control response0.30.40.9-0.9-0.80.0-0.3
Bone: connectivity density0.30.41.31.1-0.00.6-0.2
Bone: cortical apparent density2.74.36.5-2.1-2.32.5-1.0
Bone: cortical area0.61.02.4-1.6-0.70.30.9
Bone: cortical porosity2.22.44.61.41.70.22.1
Bone: cortical porosity2.12.34.71.31.70.22.2
Bone: cortical thickness2.33.97.3-2.0-2.12.70.2
Bone: cortical thickness0.40.51.1-1.0-0.40.40.7
Bone: cortical tissue density2.54.06.1-1.9-2.22.5-1.1
Condit. Reinf. active minus inactive responses1.11.23.31.81.10.2-0.5
Condit. Reinf. active-inactive response ratio0.00.00.1-0.2-0.00.1-0.2
Condit. Reinf. active responses1.62.05.52.31.4-0.3-0.7
Condit. Reinf. inactive responses1.62.15.82.41.4-0.7-0.6
Incentive salience index mean3.44.48.42.92.6-1.01.0
Condit. Reinf. lever presses6.59.714.63.43.8-2.22.8
Condit. Reinf. active minus inactive responses1.21.83.9-1.2-0.9-1.0-2.0
Condit. Reinf. active-inactive response ratio1.72.85.4-2.3-1.7-0.2-1.6
Condit. Reinf. active responses0.60.81.90.40.8-1.4-0.9
Condit. Reinf. inactive responses2.74.08.02.82.5-1.01.0
Condit. Reinf. lever presses0.30.51.60.00.5-1.3-0.0
Condit. Reinf. lever reinforcers received0.50.61.20.40.7-1.1-0.9
Conditioned reinforcement - actives0.20.71.10.20.7-1.01.1
Conditioned reinforcement - inactives0.00.10.1-0.3-0.2-0.2-0.1
Conditioned locomotion0.40.61.40.10.70.61.2
Patch foraging indifference point 0 sec0.20.60.9-0.8-0.7-0.6-1.0
Patch foraging indifference point AUC0.92.14.62.21.60.30.9
Delay disc. indifference point, 0s delay1.11.23.01.70.8-0.1-1.0
Delay disc. indifference point, 16s delay0.10.10.50.1-0.10.70.0
Delay disc. indifference point, 2s delay0.70.81.91.40.9-0.5-0.5
Delay disc. indifference point, 24s delay0.20.30.60.80.70.40.1
Delay disc. indifference point, 4s delay0.40.41.00.61.0-0.5-0.3
Delay disc. indifference point, 8s delay2.03.45.32.02.3-2.00.4
Indifference point function ln k0.51.52.8-1.7-1.0-1.0-1.2
Indifference point function log k0.51.52.8-1.7-1.0-1.0-1.2
Patch foraging total patch changes 0 sec0.20.60.8-0.9-0.7-0.4-0.9
Patch foraging total patch changes 12 sec0.30.30.60.80.10.80.5
Patch foraging total patch changes 18 sec0.00.10.10.0-0.30.20.3
Patch foraging total patch changes 24 sec0.20.82.9-0.1-0.40.2-1.7
Patch foraging total patch changes 6 sec0.50.82.0-0.3-0.90.6-1.4
Patch foraging time to switch 0 sec0.10.61.1-0.4-1.10.90.3
Patch foraging water rate 0 sec0.31.01.8-1.00.2-1.4-1.1
Patch foraging water rate 12 sec0.52.05.0-1.0-0.6-1.3-2.2
Patch foraging water rate 18 sec0.81.73.1-1.4-1.00.8-1.8
Patch foraging water rate 24 sec1.01.43.7-0.7-1.10.3-1.9
Patch foraging water rate 6 sec0.71.01.90.10.4-1.4-1.3
Seeking ratio, delayed vs. immediate footshock1.62.36.50.21.6-2.60.3
Distance traveled before self-admin0.51.12.31.10.7-1.5-0.7
Distance traveled after self-admin0.81.44.6-0.40.7-2.20.5
Extensor digitorum longus weight0.51.95.8-0.01.2-2.4-0.5
Bone: elastic displacement0.20.31.00.20.21.0-0.1
Bone: elastic work0.10.20.6-0.20.20.8-0.0
Bone: endosteal estimation1.74.213.00.21.7-3.60.9
Bone: endosteal perimeter1.02.56.10.41.5-2.51.2
Epididymis fat weight0.41.86.8-0.1-0.72.6-0.3
Delta time in closed arm before/after self-admin0.60.50.80.80.50.90.6
Delta time in open arm before/after self-admin3.54.17.1-2.4-2.70.8-1.8
Diff in mean of infusions in LGA sessions1.73.13.51.51.9-1.81.8
Delay discount exponential model param0.91.22.2-1.3-1.51.0-0.0
Extinction: sum of active levers before priming0.10.10.30.4-0.0-0.50.3
Active lever presses in extinction session 60.70.72.3-0.1-0.2-1.5-0.6
Bone: final force0.20.40.7-0.90.3-0.50.6
Bone: final moment0.30.41.2-1.10.0-0.10.7
Food consumed during 24 hour testing period1.12.37.2-1.10.6-2.70.6
Glucose0.61.02.2-1.0-1.50.4-0.9
Heart weight0.50.81.51.01.2-0.6-0.6
Delay discount hyperbolic model param1.11.42.6-1.4-1.60.9-0.1
Intermittent access intake day 1-15 change0.21.22.31.11.2-1.50.3
Intermittent access intake escalation0.20.91.81.01.0-1.30.0
Intermittent access intake escalation 21.42.44.71.61.6-2.2-0.1
Intermitt. access day 1 inactive lever presses0.00.20.40.0-0.50.60.5
Intermitt. access day 15 inactive lever presses0.00.20.50.40.20.70.2
Intermitt. access escalation Index0.10.20.4-0.50.3-0.60.2
Intermittent access day 1 total infusions0.31.01.7-1.3-0.60.51.2
Intermittent access day 15 total infusions0.10.41.2-0.4-0.0-0.11.1
Intermittent access terminal intake (last 3 days)0.50.92.4-0.20.7-0.81.5
Intermittent access total infusions0.80.92.6-0.9-0.1-0.41.6
Intermittent access day 1 locomotion0.71.32.0-1.2-0.31.21.4
Intermittent access day 15 total locomotion0.20.91.6-1.3-0.20.61.3
Intermittent access total locomotion0.70.92.2-1.5-0.0-0.31.1
Intermittent access standard deviation0.31.61.91.31.4-0.91.4
Left kidney weight0.21.32.4-0.11.5-1.50.8
Right kidney weight0.10.51.3-0.30.9-1.1-0.0
Cocaine induced anxiety0.41.01.71.01.1-0.31.3
Post-drug Anxiety0.00.10.10.30.10.30.2
Baseline Anxiety2.23.75.8-1.6-2.21.3-2.4
Tail length0.20.91.91.31.40.20.2
Length with tail0.21.02.61.01.6-0.7-0.1
Length without tail0.42.05.3-0.31.5-2.30.2
Times rat made contact with spout0.50.61.5-0.60.6-1.20.6
Lifetime Intake0.60.82.3-0.8-0.2-0.21.5
Liver weight, left0.40.72.4-1.5-0.1-0.6-0.0
Liver weight, right0.10.20.5-0.70.2-0.7-0.0
Locomotor activity0.30.40.70.10.8-0.70.7
Locomotor testing distance0.10.20.30.40.1-0.6-0.4
Locomotor testing rearing0.00.20.5-0.1-0.2-0.0-0.7
Locomotion in novel chamber0.10.20.4-0.7-0.30.20.4
Locomotion in novel chamber post-restriction0.00.10.1-0.3-0.40.3-0.3
Fecal boli incidents, locomotor time 11.43.65.52.32.1-1.31.6
Change in fecal boli incidents, locomotor task3.33.56.0-2.5-2.2-0.5-1.6
Time >=10cm from walls, locomotor time 10.70.81.40.90.6-1.20.8
Bouts of movement, locomotor time 10.20.30.50.40.7-0.30.5
Total resting periods, locomotor time 10.10.10.2-0.00.3-0.20.4
Rest time, locomotor task time 10.00.10.2-0.50.00.10.2
Distance moved, locomotor task time 10.20.41.00.6-0.40.5-1.0
Vertical activity count, locomotor time 10.00.20.50.70.00.4-0.4
Time >=10cm from walls, locomotor time 20.41.01.71.11.0-0.41.3
Bouts of movement, locomotor time 20.00.20.60.1-0.10.80.0
Total resting periods, locomotor time 20.00.10.4-0.0-0.30.60.0
Rest time, locomotor task time 20.50.91.9-0.7-1.41.1-0.1
Distance moved, locomotor task time 20.40.51.80.4-0.2-0.0-1.3
Vertical activity count, locomotor time 20.30.61.61.30.6-0.6-0.2
Light reinforcement 10.62.65.31.02.3-1.90.8
Light reinforcement 20.51.24.0-0.50.7-0.32.0
Bone: marrow area1.84.313.20.11.7-3.61.1
Bone: maximum diameter1.42.88.1-0.41.2-2.91.1
Bone: maximum force0.30.60.8-0.90.4-0.90.8
Bone: maximum moment0.30.51.0-1.00.2-0.40.9
Mean time between licks in bursts0.10.41.11.00.30.10.7
Mean num. licks in bursts0.71.85.1-2.3-0.91.20.0
Cd content in liver1.21.32.90.6-0.41.7-1.4
Co content in liver0.91.11.81.31.20.80.6
Cu content in liver0.50.61.2-0.41.0-0.31.1
Fe content in liver0.70.92.4-0.40.3-1.5-1.0
K content in liver0.00.00.1-0.30.2-0.0-0.0
Mg content in liver0.40.41.00.20.8-1.0-0.2
Mn content in liver1.31.55.00.50.80.22.2
Na content in liver0.80.81.90.31.0-1.40.6
Rb content in liver0.91.01.7-1.3-0.8-0.2-1.3
Se content in liver0.91.02.1-1.4-1.20.7-0.3
Sr content in liver1.31.13.11.81.0-0.20.7
Zn content in liver0.30.31.0-0.10.11.00.5
Bone: minimum diameter0.50.93.1-0.20.7-0.11.8
Time in familiar zone, hab. session 11.71.82.81.21.7-1.31.2
Time in novel zone, hab. session 12.02.23.1-1.2-1.81.3-1.6
Total zone transitions, hab. session 10.71.02.90.6-0.51.7-0.7
Total locomotion distance, hab. session 11.21.73.70.1-1.11.9-1.4
Locomotion velocity, hab. session 10.50.71.70.2-0.61.3-0.8
Time in familiar zone, hab. session 20.30.30.50.60.3-0.6-0.7
Time in novel zone, hab. session 20.50.61.6-1.3-0.70.30.4
Total zone transitions, hab. session 20.81.13.01.70.90.6-0.4
Total locomotion distance, hab. session 20.91.22.91.71.10.8-0.0
Locomotion velocity, hab. session 21.01.42.91.71.21.00.5
Novel to familiar place preference ratio0.40.50.80.20.9-0.60.8
Novelty place preference0.60.81.30.21.1-0.91.0
Time in novel zone, NPP test0.40.51.2-0.30.8-1.10.6
Total zone transitions, NPP test0.30.40.90.70.20.4-0.9
Total locomotion distance, NPP test0.30.40.90.90.50.3-0.6
Locomotion velocity, NPP test0.50.61.81.30.60.5-0.4
Intraocular pressure0.60.91.8-0.4-1.10.7-1.4
Delta distance traveled before/after self-admin0.60.71.8-1.30.1-0.50.9
Delta ambulatory time before/after self-admin0.40.61.3-1.20.0-0.50.9
Parametrial fat weight0.71.75.3-0.4-0.22.31.1
Pavlov. Cond. lever latency7.59.514.8-3.8-3.72.1-2.2
Pavlov. Cond. magazine entry latency11.314.526.75.24.4-0.43.5
Pavlov. Cond. change in total contacts8.08.714.13.83.6-0.72.6
Pavlov. Cond. index score10.713.523.54.94.4-1.03.2
Pavlov. Cond. latency score9.512.121.94.74.2-1.12.8
Pavlov. Cond. lever contacts9.010.817.34.24.0-1.82.6
Pavlov. Cond. magazine entry number8.210.519.6-4.4-3.70.1-2.9
Pavlov. Cond. intertrial magazine entries2.73.28.2-1.3-1.70.0-2.9
Pavlov. Cond. lever-magazine prob. diff.11.414.223.34.84.6-1.23.3
Pavlov. Cond. response bias9.712.020.54.54.2-0.83.1
Pavlov. Cond. lever latency1.21.72.9-0.9-1.71.7-0.4
Pavlov. Cond. magazine entry latency0.40.61.10.60.20.91.1
Pavlov. Cond. change in total contacts0.10.20.40.40.7-0.20.2
Pavlov. Cond. index score0.40.71.00.91.0-0.60.7
Pavlov. Cond. latency score0.40.60.80.70.9-0.90.7
Pavlov. Cond. lever contacts1.21.83.10.91.7-1.80.5
Pavlov. Cond. magazine entry number0.10.10.3-0.10.0-0.3-0.5
Pavlov. Cond. intertrial magazine entries0.10.30.80.30.3-0.90.1
Pavlov. Cond. lever-magazine prob. diff.0.61.01.41.11.2-0.60.9
Pavlov. Cond. response bias0.71.02.01.21.4-0.40.6
Time in closed arm before self-admin0.61.11.21.01.1-0.91.1
Time in closed arm after self-admin0.40.50.90.90.40.70.6
Time in open arm before self-admin0.60.71.00.21.0-1.00.9
Time in open arm after self-admin1.01.13.1-1.8-0.8-0.8-0.3
Bone: periosteal estimation0.81.95.4-0.80.8-2.31.1
Bone: periosteal perimeter0.40.81.7-0.80.2-1.30.8
Bone: post-yield work1.32.35.90.91.5-2.40.0
Progressive ratio test 1 active lever presses0.61.12.0-1.4-0.70.01.3
Progressive ratio test 1 breakpoint0.61.02.3-1.3-0.5-0.11.5
Progressive ratio test 1 inactive lever presses0.30.81.7-1.3-1.10.30.6
Progressive ratio test 2 active lever presses0.50.71.3-1.2-0.2-0.41.1
Progressive ratio test 2 breakpoint0.50.61.2-1.1-0.2-0.31.0
Progressive ratio test 2 inactive lever presses0.20.71.3-1.1-0.70.11.0
Incentive Sensitization - Responses0.20.71.4-0.00.8-0.81.2
Incentive Sensitization - Breakpoint0.20.51.00.00.8-0.51.0
Sum of active levers in priming session hrs 5-60.60.61.0-0.4-0.8-0.8-1.0
Progressive ratio0.82.34.01.72.0-0.81.3
Food seeking constrained by brief footshock1.51.94.90.00.3-2.2-1.6
Seeking ratio, punishment vs. effort1.02.23.8-1.6-1.4-0.7-2.0
Retroperitoneal fat weight0.94.012.9-0.9-1.53.6-0.4
Reaction time number correct0.10.30.8-0.0-0.5-0.4-0.9
Reaction time mean minus median0.21.01.8-1.3-0.61.30.3
Reaction time mean minus median AUC0.10.81.5-1.2-0.71.10.1
Reaction time num false alarms0.81.42.2-1.0-1.51.2-1.1
Reaction time num false alarms AUC0.61.42.2-1.1-1.50.9-1.3
Reaction time trials correct on left0.10.30.8-0.0-0.5-0.4-0.9
Reaction time trials on left0.10.41.0-0.1-0.6-0.3-1.0
Reaction time mean0.41.02.0-0.9-0.61.41.0
Reaction time mean AUC0.40.91.4-1.1-0.61.20.8
Median of all reaction times0.60.91.9-0.6-0.61.41.1
Reaction time omissions1.42.23.7-0.9-1.91.9-1.0
Reaction time false alarm rate0.60.91.3-0.7-1.11.1-0.7
Reaction time premature initiation rate0.00.10.10.20.30.1-0.3
Reaction time premature initiations0.10.20.60.20.1-0.1-0.8
Std. dev. reaction times0.31.12.8-1.0-0.81.70.3
Reaction time trials completed0.10.41.0-0.1-0.6-0.3-1.0
Reaction time trials AUC0.10.41.0-0.1-0.7-0.4-1.0
Run reversals in cocaine runway, females0.80.91.8-1.0-1.40.8-0.4
Run reversals in cocaine runway, males0.30.30.7-0.10.2-0.7-0.8
Latency to leave start box in cocaine runway0.30.40.90.30.8-0.90.4
Latency to leave start box in cocaine runway, F0.00.10.2-0.00.2-0.5-0.1
Latency to leave start box in cocaine runway, M0.50.50.80.20.9-0.80.6
Std. dev. time between licks in bursts1.73.25.72.42.0-1.60.8
Total sessions with >9 infusions0.30.41.3-0.3-0.3-0.21.1
Short access day 1 total inactive lever presses0.30.51.70.50.40.21.3
Short access day 10 total inactive lever presses0.10.72.11.40.90.10.2
Short access day 1 total infusions0.40.81.80.90.5-0.41.3
Short access day 10 total infusions0.81.42.2-1.4-1.00.41.5
Short access total infusions0.50.71.5-0.9-0.80.31.2
Short access day 1 locomotion0.71.22.31.51.1-0.11.0
Short access day 10 total locomotion0.10.20.9-0.10.1-0.30.9
Short access total locomotion0.71.03.50.60.6-0.11.9
One hour access (0.3 mA shock)0.91.13.5-1.9-0.50.10.8
Compulsive drug intake0.71.12.4-1.5-1.2-0.3-0.6
One hour access (shock baseline)0.30.82.60.00.80.01.6
Social response proportion0.70.82.2-1.5-0.70.70.5
Social responses0.60.81.60.80.9-0.31.3
Social time0.10.20.6-0.8-0.3-0.2-0.1
Soleus weight3.29.429.00.52.9-5.4-0.0
Bone: stiffness0.61.12.2-1.5-1.1-0.2-0.9
Tibialis anterior weight1.86.221.2-1.10.3-4.6-1.5
Time to tail flick, vehicle, before self-admin1.01.22.2-1.5-1.30.5-0.8
Time to tail flick, vehicle, after self-admin0.20.31.2-0.2-0.1-1.10.4
Time to tail flick, test, before self-admin0.70.81.50.90.71.20.4
Time to tail flick, test, after self-admin2.72.97.92.81.6-0.90.3
Delta time to tail flick, vehicle, before/after SA1.11.22.31.21.0-1.50.2
Delta time to tail flick, test, before/after SA0.91.13.40.70.6-1.80.2
Tibia length1.54.29.0-0.52.0-1.93.0
Ambulatory time before self-admin0.20.71.21.10.7-1.0-0.2
Ambulatory time after self-admin0.71.13.5-0.20.7-1.90.7
Bone: tissue strength2.12.23.9-2.0-1.61.3-0.8
Total heroin consumption0.50.62.2-0.10.3-1.5-0.5
Bone: trabecular number0.61.23.51.91.00.00.7
Bone: trabecular spacing0.91.33.4-0.8-1.01.8-0.4
Bone: trabecular thickness0.10.10.20.2-0.00.20.4
Bone: trabecular tissue density1.22.16.0-2.4-1.50.4-0.0
Water consumed over 24 hours0.71.33.40.11.1-1.90.8
Number of responses in last shaping day3.24.25.72.12.4-1.62.1