Ogfod3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Ogfod3 0.05 0.03 2.8e-07 0.06 0.05 0.05 0.04 2.3e-07 2.3e-06 3.0e-06 1.1e-05
2 Brain mRNA stability Ogfod3 0.07 0.05 3.1e-05 0.05 0.05 0.04 0.04 2.6e-05 2.0e-05 1.9e-04 1.3e-04
3 Adipose gene expression Ogfod3 0.08 0.05 6.0e-09 0.06 0.06 0.07 0.07 1.8e-07 1.8e-07 2.9e-08 4.3e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.6-0.1-0.00.8
Area under the delay curve1.41.61.6-1.21.3-1.3
BMI with tail0.10.20.30.6-0.30.4
BMI without tail1.34.18.51.3-1.42.9
Body weight1.35.76.82.6-2.42.2
Weight adjusted by age1.21.82.01.4-1.41.2
Bone surface0.30.61.00.8-0.51.0
Bone volume0.30.51.10.6-0.51.0
Breakpoint value in progressive ratio session1.62.03.01.7-1.7-0.2
Number of licking bursts0.10.20.5-0.30.40.7
Context. condit. distance diff. score1.01.22.2-1.00.61.5
Locomotion velocity, session 11.01.13.20.20.2-1.8
Locomotion distance, session 13.44.25.5-2.12.3-1.7
Locomotion velocity, session 23.03.55.7-1.51.7-2.4
Locomotion distance, session 21.01.31.9-1.41.4-0.5
Locomotion velocity, session 31.31.43.3-0.50.9-1.8
Locomotion distance, session 33.13.45.2-1.41.7-2.3
Stereotopy head waving bouts, day 30.40.51.30.00.3-1.2
Stereotopy head waving duration, day 30.40.51.0-0.30.5-1.0
Locomotion velocity, session 70.60.71.0-0.71.0-0.7
Locomotion distance, session 73.34.25.9-2.32.4-1.1
Stereotopy head waving bouts, day 70.10.10.10.4-0.40.4
Stereotopy head waving duration, day 70.10.10.20.3-0.30.4
Locomotion velocity, session 81.31.62.4-1.61.5-0.4
Locomotion distance, session 82.02.94.8-2.21.71.0
Degree of sensitization distance0.70.72.1-0.1-0.21.4
Degree of sensitization stereotypy0.20.20.40.1-0.30.6
Conditioned locomotion2.32.76.70.4-1.12.6
Cocaine response after cond. corrected0.20.30.50.4-0.3-0.7
Cocaine response after cond. not corrected0.40.51.5-0.00.3-1.2
Cocaine response before conditioning1.41.62.4-1.31.5-0.9
Saline control response1.62.14.40.8-1.22.1
Bone: connectivity density0.30.50.6-0.80.60.6
Bone: cortical apparent density1.72.33.4-1.21.5-1.8
Bone: cortical area2.84.36.82.6-2.11.2
Bone: cortical porosity2.73.05.52.3-1.8-0.3
Bone: cortical porosity2.93.25.72.4-2.00.2
Bone: cortical thickness3.04.98.93.0-2.40.6
Bone: cortical thickness0.80.91.81.3-1.0-0.1
Bone: cortical tissue density1.82.43.5-1.21.5-1.9
Condit. Reinf. active minus inactive responses1.51.72.80.8-1.21.7
Condit. Reinf. active-inactive response ratio0.40.50.60.6-0.60.7
Condit. Reinf. active responses3.03.76.91.1-1.72.6
Condit. Reinf. inactive responses1.11.42.90.5-1.01.7
Incentive salience index mean1.21.42.90.6-1.01.7
Condit. Reinf. lever presses0.20.40.5-0.70.50.6
Condit. Reinf. active minus inactive responses0.20.20.40.3-0.40.7
Condit. Reinf. active-inactive response ratio1.82.02.51.6-1.61.1
Condit. Reinf. active responses0.10.10.1-0.30.10.4
Condit. Reinf. inactive responses0.91.21.8-1.41.1-0.6
Condit. Reinf. lever presses0.20.30.6-0.40.20.8
Condit. Reinf. lever reinforcers received0.10.20.3-0.50.20.5
Conditioned reinforcement - actives0.20.30.5-0.60.7-0.3
Conditioned reinforcement - inactives0.20.20.40.4-0.60.4
Conditioned locomotion0.10.10.2-0.40.40.2
Patch foraging indifference point 0 sec0.10.10.40.1-0.20.6
Patch foraging indifference point AUC0.10.10.4-0.1-0.00.6
Delay disc. indifference point, 0s delay0.10.20.3-0.20.4-0.5
Delay disc. indifference point, 16s delay2.52.84.5-2.11.9-0.6
Delay disc. indifference point, 2s delay0.30.40.9-0.30.3-1.0
Delay disc. indifference point, 24s delay2.52.85.3-1.11.4-2.3
Delay disc. indifference point, 4s delay0.40.41.0-0.20.5-1.0
Delay disc. indifference point, 8s delay0.40.51.2-0.30.4-1.1
Indifference point function ln k0.91.62.0-1.01.4-1.4
Indifference point function log k0.91.62.0-1.01.4-1.4
Patch foraging total patch changes 0 sec0.10.10.40.1-0.20.7
Patch foraging total patch changes 12 sec0.40.50.50.7-0.70.7
Patch foraging total patch changes 18 sec0.20.40.5-0.70.50.6
Patch foraging total patch changes 24 sec0.30.50.90.4-0.71.0
Patch foraging total patch changes 6 sec0.40.70.70.8-0.80.9
Patch foraging time to switch 0 sec0.10.30.4-0.40.6-0.6
Patch foraging water rate 0 sec0.81.62.70.8-1.31.6
Patch foraging water rate 12 sec0.10.10.3-0.50.20.2
Patch foraging water rate 18 sec0.10.20.4-0.40.20.6
Patch foraging water rate 24 sec0.50.82.0-0.3-0.31.4
Patch foraging water rate 6 sec0.10.10.1-0.30.2-0.3
Seeking ratio, delayed vs. immediate footshock0.70.81.30.7-0.81.1
Distance traveled before self-admin1.11.52.41.5-1.40.4
Distance traveled after self-admin0.60.71.70.3-0.61.3
Extensor digitorum longus weight0.20.60.9-0.50.81.0
Bone: elastic displacement1.21.42.11.5-1.20.8
Bone: elastic work7.49.715.33.9-3.41.4
Bone: endosteal estimation0.20.50.6-0.80.60.6
Bone: endosteal perimeter0.51.11.21.1-1.01.1
Epididymis fat weight0.41.53.20.8-0.81.8
Delta time in closed arm before/after self-admin1.00.91.5-1.21.10.2
Delta time in open arm before/after self-admin0.00.00.0-0.1-0.1-0.1
Diff in mean of infusions in LGA sessions0.30.40.70.8-0.7-0.1
Delay discount exponential model param1.61.82.71.1-1.21.6
Extinction: sum of active levers before priming0.50.51.6-0.10.2-1.3
Active lever presses in extinction session 61.91.93.51.3-0.8-1.9
Bone: final force2.94.66.02.5-2.21.7
Bone: final moment3.96.28.42.9-2.61.9
Food consumed during 24 hour testing period0.40.51.10.5-0.51.1
Glucose4.36.820.00.6-0.1-4.5
Heart weight0.71.11.71.3-1.30.3
Delay discount hyperbolic model param1.51.62.61.0-1.11.6
Intermittent access intake day 1-15 change1.12.22.71.6-1.61.1
Intermittent access intake escalation0.91.82.21.5-1.51.0
Intermittent access intake escalation 23.54.05.62.3-2.40.9
Intermitt. access day 1 inactive lever presses0.62.24.60.8-1.12.2
Intermitt. access day 15 inactive lever presses0.30.71.9-0.2-0.21.4
Intermitt. access escalation Index0.40.61.6-0.3-0.01.3
Intermittent access day 1 total infusions0.00.00.10.10.10.2
Intermittent access day 15 total infusions0.50.81.20.8-0.81.1
Intermittent access terminal intake (last 3 days)0.91.21.51.0-1.11.2
Intermittent access total infusions0.20.20.50.4-0.30.7
Intermittent access day 1 locomotion0.10.10.1-0.30.4-0.2
Intermittent access day 15 total locomotion0.40.60.70.8-0.80.8
Intermittent access total locomotion0.10.10.20.4-0.30.4
Intermittent access standard deviation0.40.91.11.1-0.6-1.1
Left kidney weight0.10.40.60.8-0.4-0.6
Right kidney weight0.10.20.60.4-0.0-0.8
Cocaine induced anxiety3.04.26.92.6-2.2-0.9
Post-drug Anxiety2.22.43.21.8-1.4-1.4
Baseline Anxiety0.80.91.4-1.21.1-0.5
Tail length2.59.814.42.6-2.93.8
Length with tail1.56.69.73.1-2.81.5
Length without tail1.03.14.92.2-1.7-1.3
Times rat made contact with spout3.23.74.02.0-2.01.7
Lifetime Intake0.00.00.10.1-0.00.3
Liver weight, left0.71.23.0-0.10.7-1.7
Liver weight, right0.91.62.51.2-0.91.6
Locomotor activity0.50.70.9-0.80.8-1.0
Locomotor testing distance1.62.93.3-1.81.8-1.5
Locomotor testing rearing0.51.01.9-1.41.0-0.3
Locomotion in novel chamber0.60.81.2-1.11.0-0.4
Locomotion in novel chamber post-restriction2.84.66.81.7-2.02.6
Fecal boli incidents, locomotor time 10.40.60.9-0.91.0-0.2
Change in fecal boli incidents, locomotor task0.80.82.00.5-0.3-1.4
Time >=10cm from walls, locomotor time 11.11.23.4-0.50.11.8
Bouts of movement, locomotor time 11.21.42.7-0.61.0-1.7
Total resting periods, locomotor time 11.31.53.2-0.41.0-1.8
Rest time, locomotor task time 10.40.51.10.6-0.1-1.0
Distance moved, locomotor task time 10.10.20.5-0.0-0.30.7
Vertical activity count, locomotor time 10.10.30.9-0.2-0.30.9
Time >=10cm from walls, locomotor time 20.00.00.10.10.10.3
Bouts of movement, locomotor time 20.81.31.5-1.01.2-1.2
Total resting periods, locomotor time 20.71.11.5-1.11.2-0.8
Rest time, locomotor task time 20.00.00.0-0.00.10.0
Distance moved, locomotor task time 20.00.00.1-0.10.1-0.3
Vertical activity count, locomotor time 20.20.20.4-0.60.5-0.2
Light reinforcement 10.41.13.0-0.5-0.01.7
Light reinforcement 20.71.02.50.3-0.71.6
Bone: marrow area0.20.40.6-0.80.60.6
Bone: maximum diameter0.71.32.31.5-1.10.6
Bone: maximum force2.64.65.32.3-2.21.9
Bone: maximum moment3.46.07.42.7-2.62.0
Mean time between licks in bursts0.71.72.0-1.11.4-1.4
Mean num. licks in bursts0.81.32.01.3-1.40.5
Cd content in liver0.70.71.2-1.01.10.0
Co content in liver0.10.10.10.4-0.10.4
Cu content in liver1.41.72.71.6-1.40.6
Fe content in liver0.60.81.2-0.91.1-0.5
K content in liver1.11.02.9-0.30.11.7
Mg content in liver1.61.62.6-1.20.91.6
Mn content in liver0.00.00.00.00.0-0.0
Na content in liver0.20.30.4-0.60.60.1
Rb content in liver1.01.13.2-0.1-0.41.8
Se content in liver0.30.41.1-0.1-0.41.0
Sr content in liver0.60.50.60.8-0.6-0.7
Zn content in liver1.51.63.50.8-0.91.9
Bone: minimum diameter2.13.85.02.2-1.91.6
Time in familiar zone, hab. session 10.20.10.30.3-0.5-0.3
Time in novel zone, hab. session 10.10.10.1-0.20.30.2
Total zone transitions, hab. session 10.40.60.7-0.80.8-0.7
Total locomotion distance, hab. session 10.10.20.3-0.60.50.0
Locomotion velocity, hab. session 10.20.20.4-0.60.50.1
Time in familiar zone, hab. session 20.20.20.3-0.50.5-0.2
Time in novel zone, hab. session 20.10.10.1-0.10.2-0.4
Total zone transitions, hab. session 21.31.72.8-1.71.50.2
Total locomotion distance, hab. session 20.91.21.7-1.30.91.0
Locomotion velocity, hab. session 20.81.01.3-1.10.71.2
Novel to familiar place preference ratio3.03.34.52.1-2.11.0
Novelty place preference2.93.24.32.1-2.10.9
Time in novel zone, NPP test2.32.43.41.8-1.80.9
Total zone transitions, NPP test2.13.05.1-2.32.00.2
Total locomotion distance, NPP test1.82.44.3-2.11.50.8
Locomotion velocity, NPP test1.11.52.6-1.61.10.9
Intraocular pressure0.60.92.20.3-0.71.5
Delta distance traveled before/after self-admin0.50.61.1-1.00.80.2
Delta ambulatory time before/after self-admin1.31.62.7-1.71.4-0.0
Parametrial fat weight0.40.92.30.3-0.51.5
Pavlov. Cond. lever latency1.62.13.3-1.81.7-0.3
Pavlov. Cond. magazine entry latency3.24.15.92.4-2.30.9
Pavlov. Cond. change in total contacts1.31.32.21.5-1.3-0.4
Pavlov. Cond. index score3.34.15.32.3-2.31.3
Pavlov. Cond. latency score3.03.75.22.3-2.21.1
Pavlov. Cond. lever contacts0.91.01.51.2-1.20.5
Pavlov. Cond. magazine entry number4.35.48.4-2.92.7-0.7
Pavlov. Cond. intertrial magazine entries0.40.41.0-0.50.21.0
Pavlov. Cond. lever-magazine prob. diff.3.13.85.12.3-2.21.2
Pavlov. Cond. response bias3.13.86.12.5-2.30.6
Pavlov. Cond. lever latency0.70.92.60.30.2-1.6
Pavlov. Cond. magazine entry latency2.02.43.4-1.81.8-0.8
Pavlov. Cond. change in total contacts0.30.50.9-0.90.80.2
Pavlov. Cond. index score0.30.40.8-0.90.70.2
Pavlov. Cond. latency score0.40.60.9-1.00.80.3
Pavlov. Cond. lever contacts0.60.82.2-0.4-0.01.5
Pavlov. Cond. magazine entry number1.41.72.41.5-1.50.6
Pavlov. Cond. intertrial magazine entries0.81.32.30.6-1.11.5
Pavlov. Cond. lever-magazine prob. diff.0.40.61.0-1.00.90.0
Pavlov. Cond. response bias0.30.40.6-0.80.50.5
Time in closed arm before self-admin0.30.40.90.6-0.2-0.9
Time in closed arm after self-admin0.30.41.00.20.1-1.0
Time in open arm before self-admin0.70.81.1-1.00.90.7
Time in open arm after self-admin0.20.30.5-0.70.50.3
Bone: periosteal estimation0.71.41.81.3-1.11.2
Bone: periosteal perimeter3.35.79.43.1-2.61.0
Bone: post-yield work0.10.10.3-0.50.40.0
Progressive ratio test 1 active lever presses0.20.30.60.4-0.40.8
Progressive ratio test 1 breakpoint0.30.40.70.5-0.50.9
Progressive ratio test 1 inactive lever presses1.42.15.00.6-1.02.2
Progressive ratio test 2 active lever presses0.20.30.50.2-0.40.7
Progressive ratio test 2 breakpoint0.20.30.60.3-0.50.7
Progressive ratio test 2 inactive lever presses0.30.40.60.7-0.80.3
Incentive Sensitization - Responses0.20.40.80.2-0.50.9
Incentive Sensitization - Breakpoint0.20.30.60.2-0.50.8
Sum of active levers in priming session hrs 5-61.91.82.81.6-1.70.2
Progressive ratio0.50.81.0-0.70.9-1.0
Food seeking constrained by brief footshock0.20.30.40.7-0.4-0.4
Seeking ratio, punishment vs. effort0.10.10.30.1-0.20.6
Retroperitoneal fat weight1.56.613.71.5-1.93.7
Reaction time number correct1.63.15.0-2.21.81.1
Reaction time mean minus median0.10.20.30.5-0.4-0.5
Reaction time mean minus median AUC0.00.00.10.2-0.2-0.2
Reaction time num false alarms0.10.10.1-0.30.3-0.2
Reaction time num false alarms AUC0.30.50.6-0.80.8-0.5
Reaction time trials correct on left1.63.15.0-2.21.81.1
Reaction time trials on left1.73.35.2-2.31.81.2
Reaction time mean0.10.20.50.2-0.40.7
Reaction time mean AUC0.10.20.5-0.20.00.7
Median of all reaction times0.20.30.70.0-0.30.9
Reaction time omissions0.10.10.2-0.20.10.5
Reaction time false alarm rate0.30.40.80.4-0.3-0.9
Reaction time premature initiation rate0.70.91.1-0.90.9-1.0
Reaction time premature initiations1.32.23.9-2.01.7-0.3
Std. dev. reaction times0.10.20.2-0.50.4-0.4
Reaction time trials completed1.73.35.2-2.31.81.2
Reaction time trials AUC1.73.25.0-2.21.81.2
Run reversals in cocaine runway, females1.01.01.8-1.31.0-0.3
Run reversals in cocaine runway, males2.42.43.41.8-1.80.7
Latency to leave start box in cocaine runway0.40.50.7-0.80.8-0.2
Latency to leave start box in cocaine runway, F1.61.82.9-1.71.60.2
Latency to leave start box in cocaine runway, M0.30.30.40.6-0.5-0.3
Std. dev. time between licks in bursts1.31.72.5-1.61.21.2
Total sessions with >9 infusions0.20.30.5-0.40.7-0.3
Short access day 1 total inactive lever presses0.40.50.8-0.80.9-0.2
Short access day 10 total inactive lever presses0.92.13.61.0-1.31.9
Short access day 1 total infusions1.21.61.9-1.11.4-1.3
Short access day 10 total infusions1.31.61.71.3-1.21.3
Short access total infusions0.00.00.0-0.00.1-0.0
Short access day 1 locomotion0.20.20.60.20.1-0.8
Short access day 10 total locomotion0.40.71.01.0-0.6-0.9
Short access total locomotion0.30.40.70.8-0.5-0.5
One hour access (0.3 mA shock)0.20.20.50.1-0.20.7
Compulsive drug intake0.30.30.8-0.40.10.9
One hour access (shock baseline)0.10.10.2-0.10.10.5
Social response proportion0.30.40.6-0.60.8-0.3
Social responses0.50.61.2-0.61.1-0.5
Social time0.30.40.6-0.60.8-0.5
Soleus weight1.03.04.41.5-1.52.1
Bone: stiffness0.00.10.10.4-0.2-0.0
Tibialis anterior weight0.10.20.4-0.20.40.6
Time to tail flick, vehicle, before self-admin0.10.10.2-0.40.4-0.1
Time to tail flick, vehicle, after self-admin2.22.93.4-1.41.8-1.8
Time to tail flick, test, before self-admin0.00.00.00.00.1-0.1
Time to tail flick, test, after self-admin0.60.71.9-0.00.3-1.4
Delta time to tail flick, vehicle, before/after SA0.40.40.7-0.70.8-0.3
Delta time to tail flick, test, before/after SA0.60.61.90.20.0-1.4
Tibia length7.320.027.45.2-4.93.0
Ambulatory time before self-admin1.82.83.81.9-1.91.0
Ambulatory time after self-admin0.40.40.90.3-0.51.0
Bone: tissue strength0.60.61.40.6-0.51.2
Total heroin consumption0.91.01.41.0-0.7-1.2
Bone: trabecular number0.10.10.20.1-0.30.4
Bone: trabecular spacing1.21.52.4-1.61.30.7
Bone: trabecular thickness2.02.53.71.9-1.90.4
Bone: trabecular tissue density0.60.91.1-0.81.0-0.9
Water consumed over 24 hours0.30.41.01.0-0.5-0.1
Number of responses in last shaping day0.20.20.4-0.20.4-0.6