Npr2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Npr2 0.05 0.04 9.0e-04 0.04 0.02 0.03 0.04 1.5e-04 6.1e-03 4.5e-04 3.2e-04
2 LHb intron excision ratio chr5_62688135_62688359 0.23 0.14 9.5e-03 0.04 0.08 0.02 0.07 3.6e-02 6.6e-03 8.9e-02 7.7e-03
3 LHb intron excision ratio chr5_62688131_62688359 0.27 0.15 3.9e-03 0.02 0.09 0.01 0.07 9.5e-02 3.5e-03 2.1e-01 7.7e-03
4 Liver gene expression Npr2 0.04 0.03 2.6e-03 0 0.01 0 0.01 2.1e-01 1.6e-02 7.7e-02 1.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.32.51.60.3-0.2-1.6
Area under the delay curve0.30.41.0-0.60.1-0.21.0
BMI with tail0.82.85.52.31.3-1.1-1.7
BMI without tail1.13.36.62.61.4-1.2-1.8
Body weight2.29.617.14.13.2-3.0-1.4
Weight adjusted by age0.50.81.20.61.1-1.10.5
Bone surface0.51.02.21.50.8-0.7-0.7
Bone volume0.40.71.51.20.4-0.3-1.0
Breakpoint value in progressive ratio session4.15.09.7-0.32.1-2.33.1
Number of licking bursts1.62.65.42.30.9-0.7-2.0
Context. condit. distance diff. score0.10.10.1-0.4-0.30.3-0.0
Locomotion velocity, session 16.06.59.81.23.0-3.12.4
Locomotion distance, session 11.41.72.70.81.6-1.61.1
Locomotion velocity, session 21.21.52.91.70.3-0.2-1.7
Locomotion distance, session 21.31.83.21.81.3-1.4-0.2
Locomotion velocity, session 31.01.21.70.41.2-1.31.1
Locomotion distance, session 32.62.94.51.72.1-2.00.1
Stereotopy head waving bouts, day 30.91.12.20.11.0-1.11.5
Stereotopy head waving duration, day 30.30.41.1-0.30.3-0.41.0
Locomotion velocity, session 70.00.10.1-0.3-0.20.10.2
Locomotion distance, session 70.30.40.60.60.8-0.70.2
Stereotopy head waving bouts, day 71.61.92.81.41.7-1.60.1
Stereotopy head waving duration, day 70.60.71.11.00.9-0.9-0.0
Locomotion velocity, session 80.30.30.70.20.5-0.60.8
Locomotion distance, session 80.40.61.00.60.9-1.00.6
Degree of sensitization distance1.11.11.7-1.1-1.31.20.3
Degree of sensitization stereotypy1.11.21.71.31.3-1.2-0.5
Conditioned locomotion1.01.21.6-0.11.3-1.31.2
Cocaine response after cond. corrected1.51.84.8-1.30.6-0.72.2
Cocaine response after cond. not corrected1.51.74.8-1.00.6-0.82.2
Cocaine response before conditioning0.30.41.01.00.0-0.1-0.8
Saline control response1.01.42.01.21.4-1.40.5
Bone: connectivity density0.50.81.81.10.00.1-1.4
Bone: cortical apparent density1.01.31.9-0.2-1.31.4-1.3
Bone: cortical area1.52.36.11.6-0.30.4-2.5
Bone: cortical porosity0.10.10.2-0.5-0.40.30.1
Bone: cortical porosity0.00.00.10.10.3-0.30.2
Bone: cortical thickness1.11.84.90.5-0.91.1-2.2
Bone: cortical thickness0.81.01.5-0.8-1.21.2-0.5
Bone: cortical tissue density0.81.11.7-0.3-1.31.3-1.1
Condit. Reinf. active minus inactive responses0.30.30.80.9-0.00.0-0.8
Condit. Reinf. active-inactive response ratio0.50.50.7-0.9-0.80.70.2
Condit. Reinf. active responses1.51.94.52.10.4-0.3-1.7
Condit. Reinf. inactive responses1.92.34.72.20.2-0.1-2.1
Incentive salience index mean2.53.07.12.71.3-1.2-1.4
Condit. Reinf. lever presses6.59.118.94.32.8-2.6-1.7
Condit. Reinf. active minus inactive responses0.30.41.00.80.10.0-1.0
Condit. Reinf. active-inactive response ratio0.20.20.70.1-0.30.4-0.8
Condit. Reinf. active responses1.01.43.11.80.7-0.6-1.4
Condit. Reinf. inactive responses1.31.63.51.90.4-0.3-1.7
Condit. Reinf. lever presses1.72.45.91.8-0.30.5-2.4
Condit. Reinf. lever reinforcers received1.21.73.82.00.7-0.5-1.5
Conditioned reinforcement - actives0.20.40.70.10.8-0.80.5
Conditioned reinforcement - inactives0.30.40.9-0.70.4-0.41.0
Conditioned locomotion0.81.11.90.31.4-1.30.9
Patch foraging indifference point 0 sec3.15.89.40.83.1-3.02.0
Patch foraging indifference point AUC4.76.814.73.82.3-2.1-1.7
Delay disc. indifference point, 0s delay0.60.61.8-0.80.0-0.21.3
Delay disc. indifference point, 16s delay1.41.53.8-0.80.8-0.92.0
Delay disc. indifference point, 2s delay0.10.20.30.1-0.30.4-0.6
Delay disc. indifference point, 24s delay0.10.10.2-0.4-0.40.40.1
Delay disc. indifference point, 4s delay0.00.00.1-0.20.0-0.00.3
Delay disc. indifference point, 8s delay0.00.00.00.1-0.10.1-0.2
Indifference point function ln k1.32.25.3-2.3-0.90.81.5
Indifference point function log k1.32.25.3-2.3-0.90.81.5
Patch foraging total patch changes 0 sec3.15.89.81.23.1-3.11.6
Patch foraging total patch changes 12 sec1.62.13.31.81.6-1.4-0.8
Patch foraging total patch changes 18 sec0.60.81.41.21.0-1.0-0.2
Patch foraging total patch changes 24 sec1.83.14.42.12.1-1.9-0.3
Patch foraging total patch changes 6 sec3.85.79.12.33.0-2.90.3
Patch foraging time to switch 0 sec2.04.06.2-2.5-2.32.10.3
Patch foraging water rate 0 sec2.04.27.11.82.7-2.50.3
Patch foraging water rate 12 sec0.20.30.5-0.00.7-0.70.6
Patch foraging water rate 18 sec0.10.20.60.40.2-0.1-0.8
Patch foraging water rate 24 sec0.50.70.9-0.4-0.81.0-0.9
Patch foraging water rate 6 sec0.30.40.80.90.7-0.6-0.3
Seeking ratio, delayed vs. immediate footshock1.82.24.12.01.3-1.1-1.4
Distance traveled before self-admin2.43.25.82.41.9-1.8-0.3
Distance traveled after self-admin0.70.92.11.0-0.50.5-1.5
Extensor digitorum longus weight2.810.921.94.73.0-2.7-2.3
Bone: elastic displacement3.74.38.9-3.0-2.02.00.7
Bone: elastic work4.25.58.1-2.2-2.72.8-1.1
Bone: endosteal estimation0.91.94.02.01.3-1.3-0.4
Bone: endosteal perimeter1.02.23.51.91.6-1.6-0.1
Epididymis fat weight0.20.71.51.20.00.0-1.2
Delta time in closed arm before/after self-admin1.01.02.20.4-0.80.9-1.5
Delta time in open arm before/after self-admin0.40.41.0-0.40.4-0.51.0
Diff in mean of infusions in LGA sessions0.70.91.4-0.5-1.21.2-0.6
Delay discount exponential model param0.30.30.90.5-0.20.3-1.0
Extinction: sum of active levers before priming1.82.04.1-2.0-0.60.51.7
Active lever presses in extinction session 60.20.20.4-0.60.1-0.10.6
Bone: final force0.81.22.41.60.00.0-1.6
Bone: final moment0.71.22.71.3-0.30.3-1.7
Food consumed during 24 hour testing period0.40.51.01.00.7-0.7-0.2
Glucose1.62.54.52.11.6-1.4-1.0
Heart weight0.30.51.11.00.4-0.3-0.8
Delay discount hyperbolic model param0.20.30.70.4-0.30.3-0.8
Intermittent access intake day 1-15 change0.20.51.20.80.00.1-1.1
Intermittent access intake escalation0.30.51.50.7-0.20.3-1.2
Intermittent access intake escalation 21.11.33.60.7-0.70.8-1.9
Intermitt. access day 1 inactive lever presses0.30.91.81.31.0-0.9-0.4
Intermitt. access day 15 inactive lever presses0.10.20.30.10.5-0.50.3
Intermitt. access escalation Index0.30.51.01.00.7-0.7-0.0
Intermittent access day 1 total infusions1.52.45.5-1.11.2-1.22.3
Intermittent access day 15 total infusions0.10.10.30.10.5-0.40.1
Intermittent access terminal intake (last 3 days)0.20.30.70.20.8-0.70.3
Intermittent access total infusions0.80.91.70.21.3-1.20.8
Intermittent access day 1 locomotion1.21.53.5-1.00.9-0.91.9
Intermittent access day 15 total locomotion0.71.22.6-1.10.8-0.71.6
Intermittent access total locomotion0.60.71.9-1.4-0.10.11.0
Intermittent access standard deviation0.20.40.70.40.8-0.7-0.0
Left kidney weight0.52.33.61.91.7-1.70.1
Right kidney weight0.20.82.11.40.4-0.4-0.9
Cocaine induced anxiety0.10.10.2-0.4-0.50.40.2
Post-drug Anxiety0.40.41.01.00.5-0.60.0
Baseline Anxiety0.40.40.90.90.1-0.1-0.9
Tail length0.93.58.42.91.3-1.2-1.5
Length with tail1.35.88.93.02.7-2.6-0.1
Length without tail0.72.23.30.71.8-1.81.4
Times rat made contact with spout0.20.30.80.5-0.00.2-0.9
Lifetime Intake1.51.82.80.21.7-1.61.3
Liver weight, left0.00.00.10.0-0.1-0.00.3
Liver weight, right0.50.91.9-1.4-0.90.90.4
Locomotor activity0.00.00.00.1-0.10.1-0.0
Locomotor testing distance0.30.51.3-0.30.5-0.61.2
Locomotor testing rearing0.30.61.41.20.6-0.7-0.1
Locomotion in novel chamber0.70.91.3-0.8-1.11.1-0.6
Locomotion in novel chamber post-restriction1.32.15.41.0-1.01.1-2.3
Fecal boli incidents, locomotor time 10.60.81.2-1.1-1.01.0-0.0
Change in fecal boli incidents, locomotor task1.31.31.91.11.4-1.40.5
Time >=10cm from walls, locomotor time 11.01.11.60.31.2-1.31.0
Bouts of movement, locomotor time 11.01.22.3-1.5-1.00.90.7
Total resting periods, locomotor time 11.82.03.4-1.8-1.51.50.4
Rest time, locomotor task time 14.25.28.2-1.6-2.92.9-1.4
Distance moved, locomotor task time 12.94.36.51.92.6-2.50.9
Vertical activity count, locomotor time 11.94.66.91.62.5-2.61.5
Time >=10cm from walls, locomotor time 20.10.10.20.40.4-0.50.2
Bouts of movement, locomotor time 20.20.40.60.80.6-0.6-0.3
Total resting periods, locomotor time 20.10.10.20.40.4-0.3-0.2
Rest time, locomotor task time 20.60.81.2-1.1-1.01.00.2
Distance moved, locomotor task time 20.50.61.40.7-0.50.5-1.2
Vertical activity count, locomotor time 20.30.41.11.10.5-0.6-0.2
Light reinforcement 12.15.28.21.32.7-2.91.9
Light reinforcement 23.65.68.21.02.7-2.92.4
Bone: marrow area0.81.84.22.01.1-1.1-0.6
Bone: maximum diameter1.22.34.82.20.4-0.3-2.1
Bone: maximum force1.52.65.52.30.3-0.2-2.2
Bone: maximum moment1.32.35.02.1-0.00.1-2.2
Mean time between licks in bursts0.30.81.6-0.7-1.31.10.1
Mean num. licks in bursts0.91.32.7-1.6-1.00.91.0
Cd content in liver0.30.30.60.80.6-0.6-0.3
Co content in liver0.50.61.6-0.80.2-0.41.3
Cu content in liver1.31.62.2-1.5-1.51.30.5
Fe content in liver0.70.82.3-1.0-0.1-0.11.5
K content in liver0.40.40.9-0.30.4-0.51.0
Mg content in liver0.30.30.6-0.8-0.0-0.00.7
Mn content in liver0.80.92.40.9-0.30.4-1.6
Na content in liver1.61.82.6-1.5-1.61.40.5
Rb content in liver3.23.78.4-2.9-1.31.11.8
Se content in liver1.41.73.71.90.10.0-1.7
Sr content in liver0.60.51.51.20.5-0.5-0.3
Zn content in liver0.20.30.40.2-0.60.6-0.6
Bone: minimum diameter0.20.30.4-0.1-0.60.7-0.6
Time in familiar zone, hab. session 12.72.63.9-0.9-1.82.0-1.6
Time in novel zone, hab. session 12.02.06.0-0.90.6-0.92.4
Total zone transitions, hab. session 10.00.00.10.1-0.20.2-0.2
Total locomotion distance, hab. session 10.91.32.80.6-1.01.0-1.7
Locomotion velocity, hab. session 11.21.63.91.5-0.30.4-2.0
Time in familiar zone, hab. session 21.92.03.2-1.0-1.71.8-0.9
Time in novel zone, hab. session 21.81.84.6-0.90.9-1.02.1
Total zone transitions, hab. session 20.60.81.11.01.0-1.10.2
Total locomotion distance, hab. session 20.40.61.41.20.4-0.3-0.7
Locomotion velocity, hab. session 20.60.81.81.40.5-0.4-0.9
Novel to familiar place preference ratio2.02.25.4-1.80.1-0.32.3
Novelty place preference2.52.75.7-2.2-0.2-0.02.4
Time in novel zone, NPP test3.03.26.8-2.5-0.30.12.6
Total zone transitions, NPP test0.81.21.61.21.2-1.30.3
Total locomotion distance, NPP test1.82.53.92.01.8-1.7-0.1
Locomotion velocity, NPP test2.02.84.92.21.8-1.7-0.5
Intraocular pressure2.23.24.52.12.1-2.0-0.3
Delta distance traveled before/after self-admin0.70.71.2-0.5-1.11.1-0.6
Delta ambulatory time before/after self-admin1.21.52.4-1.1-1.61.5-0.3
Parametrial fat weight0.20.41.0-0.30.4-0.51.0
Pavlov. Cond. lever latency4.05.110.9-3.3-2.01.81.5
Pavlov. Cond. magazine entry latency0.30.40.80.90.00.0-0.8
Pavlov. Cond. change in total contacts1.71.93.92.01.3-1.2-0.7
Pavlov. Cond. index score1.62.15.02.20.8-0.7-1.5
Pavlov. Cond. latency score1.62.04.72.20.9-0.8-1.3
Pavlov. Cond. lever contacts3.64.39.43.11.7-1.6-1.6
Pavlov. Cond. magazine entry number0.40.51.0-1.0-0.0-0.01.0
Pavlov. Cond. intertrial magazine entries0.10.20.50.70.1-0.1-0.5
Pavlov. Cond. lever-magazine prob. diff.1.62.04.72.20.5-0.4-1.7
Pavlov. Cond. response bias2.12.66.12.51.1-1.0-1.4
Pavlov. Cond. lever latency1.62.24.9-1.90.2-0.32.2
Pavlov. Cond. magazine entry latency0.81.01.8-0.6-1.31.3-0.4
Pavlov. Cond. change in total contacts1.82.85.80.7-1.51.6-2.4
Pavlov. Cond. index score1.21.62.70.4-1.31.3-1.6
Pavlov. Cond. latency score1.31.73.20.4-1.21.3-1.8
Pavlov. Cond. lever contacts1.31.84.31.6-0.40.5-2.1
Pavlov. Cond. magazine entry number1.62.02.70.01.6-1.61.7
Pavlov. Cond. intertrial magazine entries0.30.50.90.60.9-0.9-0.0
Pavlov. Cond. lever-magazine prob. diff.1.41.93.10.3-1.41.5-1.8
Pavlov. Cond. response bias1.21.63.61.0-0.91.0-1.9
Time in closed arm before self-admin0.10.20.4-0.7-0.10.10.4
Time in closed arm after self-admin1.01.11.7-0.7-1.21.3-0.8
Time in open arm before self-admin1.21.31.91.41.2-1.30.2
Time in open arm after self-admin1.81.93.01.21.7-1.70.5
Bone: periosteal estimation0.91.84.42.10.6-0.5-1.6
Bone: periosteal perimeter0.40.71.21.10.8-0.8-0.3
Bone: post-yield work1.72.45.02.21.5-1.5-0.4
Progressive ratio test 1 active lever presses2.22.74.5-0.51.7-1.72.1
Progressive ratio test 1 breakpoint2.02.43.8-0.41.7-1.72.0
Progressive ratio test 1 inactive lever presses2.33.35.21.22.3-2.31.3
Progressive ratio test 2 active lever presses2.22.65.0-0.61.6-1.62.2
Progressive ratio test 2 breakpoint2.32.75.3-0.71.6-1.62.3
Progressive ratio test 2 inactive lever presses0.40.61.10.31.0-1.00.5
Incentive Sensitization - Responses0.50.71.7-0.60.6-0.71.3
Incentive Sensitization - Breakpoint0.60.81.8-0.60.6-0.71.3
Sum of active levers in priming session hrs 5-62.32.25.6-1.60.5-0.62.4
Progressive ratio0.00.00.0-0.00.2-0.20.2
Food seeking constrained by brief footshock7.79.413.23.53.6-3.5-0.1
Seeking ratio, punishment vs. effort1.42.13.51.91.6-1.5-0.4
Retroperitoneal fat weight0.41.82.6-1.6-1.61.5-0.0
Reaction time number correct0.30.50.80.40.9-0.90.4
Reaction time mean minus median1.53.76.70.1-2.02.1-2.6
Reaction time mean minus median AUC0.92.45.70.7-1.21.4-2.4
Reaction time num false alarms0.30.50.70.1-0.70.8-0.9
Reaction time num false alarms AUC0.20.20.50.70.1-0.1-0.7
Reaction time trials correct on left0.30.50.80.40.9-0.90.4
Reaction time trials on left0.20.40.70.30.8-0.80.5
Reaction time mean3.25.18.3-1.7-2.92.8-1.2
Reaction time mean AUC3.45.58.8-1.8-3.02.9-1.2
Median of all reaction times3.34.77.2-2.2-2.72.6-0.2
Reaction time omissions1.01.52.6-1.6-1.31.10.8
Reaction time false alarm rate0.30.40.6-0.1-0.80.8-0.6
Reaction time premature initiation rate1.72.44.7-2.2-1.51.50.3
Reaction time premature initiations0.71.23.2-1.8-0.80.90.5
Std. dev. reaction times2.34.26.3-0.6-2.52.5-2.0
Reaction time trials completed0.20.40.70.30.8-0.80.5
Reaction time trials AUC0.20.40.70.30.8-0.80.4
Run reversals in cocaine runway, females0.50.50.80.1-0.80.8-0.9
Run reversals in cocaine runway, males0.00.00.1-0.3-0.10.10.1
Latency to leave start box in cocaine runway0.30.30.50.70.3-0.2-0.7
Latency to leave start box in cocaine runway, F0.20.20.4-0.20.4-0.40.6
Latency to leave start box in cocaine runway, M1.21.12.61.60.8-0.7-0.9
Std. dev. time between licks in bursts0.20.30.5-0.6-0.70.60.2
Total sessions with >9 infusions1.72.02.80.31.6-1.71.6
Short access day 1 total inactive lever presses1.92.54.01.02.0-2.01.1
Short access day 10 total inactive lever presses0.10.30.60.80.3-0.3-0.7
Short access day 1 total infusions2.02.73.70.41.9-1.91.8
Short access day 10 total infusions1.82.33.40.11.7-1.71.8
Short access total infusions2.32.94.8-0.11.8-1.92.2
Short access day 1 locomotion1.01.33.3-1.00.5-0.61.8
Short access day 10 total locomotion0.40.81.4-1.2-1.01.00.1
Short access total locomotion0.60.71.7-0.40.7-0.71.3
One hour access (0.3 mA shock)1.31.42.40.61.5-1.50.9
Compulsive drug intake0.60.71.70.4-0.70.8-1.3
One hour access (shock baseline)2.23.34.90.42.2-2.21.8
Social response proportion2.83.25.5-1.6-2.32.2-0.1
Social responses0.30.41.11.0-0.00.0-0.8
Social time0.30.41.0-0.1-1.00.80.0
Soleus weight1.02.84.60.61.7-1.92.1
Bone: stiffness1.93.27.22.70.2-0.2-2.3
Tibialis anterior weight4.816.331.65.63.9-3.7-2.0
Time to tail flick, vehicle, before self-admin0.30.30.6-0.8-0.50.50.0
Time to tail flick, vehicle, after self-admin0.00.00.1-0.0-0.00.1-0.4
Time to tail flick, test, before self-admin0.30.30.70.80.5-0.4-0.4
Time to tail flick, test, after self-admin1.61.74.81.3-0.20.4-2.2
Delta time to tail flick, vehicle, before/after SA0.10.10.10.4-0.10.1-0.4
Delta time to tail flick, test, before/after SA0.60.60.8-0.3-0.80.9-0.9
Tibia length0.20.61.30.20.6-0.81.1
Ambulatory time before self-admin2.03.04.52.11.9-1.90.0
Ambulatory time after self-admin0.20.20.50.70.2-0.2-0.3
Bone: tissue strength0.40.40.50.4-0.70.6-0.7
Total heroin consumption1.92.35.6-1.01.0-1.22.4
Bone: trabecular number0.71.12.41.40.10.1-1.6
Bone: trabecular spacing0.20.20.3-0.2-0.50.6-0.5
Bone: trabecular thickness0.20.20.3-0.2-0.60.6-0.3
Bone: trabecular tissue density1.31.95.12.30.6-0.6-1.3
Water consumed over 24 hours0.30.40.70.90.5-0.4-0.8
Number of responses in last shaping day4.04.37.10.22.2-2.32.7