Ndufa6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb mRNA stability Ndufa6 0.17 0.1 8.6e-03 -0.01 -0 -0.01 -0.01 8.6e-01 3.9e-01 9.7e-01 7.6e-01
2 NAcc mRNA stability Ndufa6 0.06 0.04 3.9e-03 -0 0 -0 -0 9.7e-01 1.9e-01 8.7e-01 7.5e-01
3 NAcc gene expression Ndufa6 0.04 0.03 3.2e-03 0.03 0.02 0.02 0.03 2.5e-04 1.8e-03 3.1e-03 5.4e-04
4 Brain gene expression Ndufa6 0.07 0.05 1.5e-03 0.04 0.03 0.04 0.04 7.7e-05 9.7e-04 1.5e-04 2.3e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.91.0-0.50.20.2
Area under the delay curve0.10.10.30.50.2-0.1-0.1
BMI with tail0.62.14.9-2.2-0.51.31.2
BMI without tail0.00.10.3-0.50.10.00.0
Body weight0.41.75.7-2.40.20.80.6
Weight adjusted by age0.60.71.0-0.11.0-0.9-0.9
Bone surface0.20.41.31.2-0.30.10.1
Bone volume0.10.10.50.7-0.1-0.00.0
Breakpoint value in progressive ratio session0.40.51.00.1-1.00.70.7
Number of licking bursts0.10.10.20.30.0-0.4-0.3
Context. condit. distance diff. score2.32.78.9-3.01.40.20.0
Locomotion velocity, session 10.20.20.40.60.2-0.3-0.3
Locomotion distance, session 11.11.53.11.80.3-1.2-1.1
Locomotion velocity, session 20.00.00.10.20.00.10.1
Locomotion distance, session 21.41.94.62.1-1.50.60.6
Locomotion velocity, session 30.50.60.90.30.9-0.8-0.9
Locomotion distance, session 31.82.02.80.81.3-1.7-1.6
Stereotopy head waving bouts, day 30.30.30.60.0-0.50.70.8
Stereotopy head waving duration, day 30.40.51.1-1.00.10.70.7
Locomotion velocity, session 70.40.40.80.10.9-0.7-0.7
Locomotion distance, session 70.10.20.60.8-0.10.0-0.1
Stereotopy head waving bouts, day 70.40.51.0-0.91.0-0.2-0.1
Stereotopy head waving duration, day 70.60.71.6-1.01.3-0.5-0.5
Locomotion velocity, session 81.21.43.6-1.9-0.41.00.9
Locomotion distance, session 80.30.41.1-1.00.60.1-0.1
Degree of sensitization distance2.12.13.1-1.1-1.21.81.7
Degree of sensitization stereotypy0.80.91.8-1.01.4-0.6-0.5
Conditioned locomotion1.11.32.3-0.81.5-1.0-1.0
Cocaine response after cond. corrected0.20.20.3-0.20.5-0.4-0.5
Cocaine response after cond. not corrected0.30.30.4-0.10.6-0.5-0.7
Cocaine response before conditioning0.00.00.10.30.1-0.1-0.2
Saline control response0.50.71.1-0.21.1-0.9-0.9
Bone: connectivity density0.20.30.60.8-0.60.40.5
Bone: cortical apparent density0.30.31.21.1-0.4-0.0-0.1
Bone: cortical area0.50.81.8-1.4-0.10.80.9
Bone: cortical porosity0.10.10.3-0.50.3-0.00.1
Bone: cortical porosity0.20.20.7-0.90.20.30.3
Bone: cortical thickness1.01.72.3-0.9-1.21.51.5
Bone: cortical thickness1.11.32.2-1.5-0.71.21.1
Bone: cortical tissue density0.30.31.21.1-0.40.0-0.1
Condit. Reinf. active minus inactive responses0.70.81.21.1-0.90.80.7
Condit. Reinf. active-inactive response ratio0.10.20.20.2-0.30.50.4
Condit. Reinf. active responses0.70.82.61.6-0.80.30.2
Condit. Reinf. inactive responses0.60.72.41.5-0.3-0.4-0.5
Incentive salience index mean0.81.01.91.4-1.00.70.6
Condit. Reinf. lever presses0.60.72.71.6-0.60.1-0.0
Condit. Reinf. active minus inactive responses1.62.02.90.4-1.71.61.6
Condit. Reinf. active-inactive response ratio3.13.24.70.6-2.22.02.0
Condit. Reinf. active responses0.71.01.5-0.2-1.01.21.2
Condit. Reinf. inactive responses0.20.20.6-0.80.6-0.0-0.0
Condit. Reinf. lever presses1.21.62.21.1-1.51.21.2
Condit. Reinf. lever reinforcers received1.01.41.90.3-1.31.41.3
Conditioned reinforcement - actives0.20.20.5-0.60.7-0.1-0.3
Conditioned reinforcement - inactives0.60.71.1-0.0-0.90.91.1
Conditioned locomotion0.81.01.9-1.4-0.11.01.1
Patch foraging indifference point 0 sec0.71.22.10.9-1.41.01.0
Patch foraging indifference point AUC0.10.10.30.6-0.30.2-0.2
Delay disc. indifference point, 0s delay0.20.30.8-0.90.10.30.3
Delay disc. indifference point, 16s delay0.60.61.91.4-0.2-0.4-0.4
Delay disc. indifference point, 2s delay0.10.10.3-0.20.5-0.1-0.1
Delay disc. indifference point, 24s delay0.30.30.40.50.6-0.5-0.5
Delay disc. indifference point, 4s delay1.11.21.70.2-1.11.31.3
Delay disc. indifference point, 8s delay0.30.30.70.80.4-0.4-0.4
Indifference point function ln k0.30.40.9-1.00.10.30.6
Indifference point function log k0.30.40.9-1.00.10.30.6
Patch foraging total patch changes 0 sec0.71.11.90.9-1.40.90.9
Patch foraging total patch changes 12 sec0.81.11.80.8-1.31.10.9
Patch foraging total patch changes 18 sec1.01.32.20.6-1.51.30.9
Patch foraging total patch changes 24 sec0.20.20.60.8-0.50.1-0.3
Patch foraging total patch changes 6 sec0.91.42.30.4-1.51.31.1
Patch foraging time to switch 0 sec0.30.40.90.90.4-0.6-0.5
Patch foraging water rate 0 sec0.71.21.6-0.7-1.21.31.0
Patch foraging water rate 12 sec0.00.10.10.4-0.40.10.0
Patch foraging water rate 18 sec0.60.81.81.3-1.10.20.2
Patch foraging water rate 24 sec1.21.73.00.0-1.71.31.4
Patch foraging water rate 6 sec0.50.71.91.40.1-0.6-0.8
Seeking ratio, delayed vs. immediate footshock1.21.44.52.1-0.9-0.0-0.4
Distance traveled before self-admin0.60.61.20.3-1.10.80.8
Distance traveled after self-admin1.31.42.1-0.2-1.31.41.4
Extensor digitorum longus weight0.00.10.20.00.1-0.4-0.3
Bone: elastic displacement0.10.20.2-0.40.5-0.4-0.2
Bone: elastic work1.01.32.3-1.5-0.41.11.3
Bone: endosteal estimation0.20.51.2-0.31.1-0.6-0.6
Bone: endosteal perimeter0.91.83.8-0.92.0-1.1-1.1
Epididymis fat weight1.02.24.8-2.21.8-0.6-0.6
Delta time in closed arm before/after self-admin0.50.51.5-1.20.20.50.5
Delta time in open arm before/after self-admin0.60.60.90.40.6-0.9-0.9
Diff in mean of infusions in LGA sessions0.10.10.40.6-0.4-0.1-0.1
Delay discount exponential model param0.10.10.3-0.6-0.20.10.1
Extinction: sum of active levers before priming0.10.10.1-0.3-0.20.20.2
Active lever presses in extinction session 60.20.20.2-0.4-0.50.50.5
Bone: final force1.82.94.3-1.1-1.32.12.0
Bone: final moment2.13.34.9-1.2-1.42.22.2
Food consumed during 24 hour testing period1.01.31.8-1.3-0.71.11.3
Glucose0.20.31.01.0-0.50.20.1
Heart weight2.63.77.4-2.7-0.91.81.8
Delay discount hyperbolic model param0.00.00.1-0.4-0.2-0.0-0.0
Intermittent access intake day 1-15 change0.00.00.10.3-0.2-0.00.1
Intermittent access intake escalation0.10.10.20.4-0.30.00.1
Intermittent access intake escalation 20.00.00.00.10.1-0.2-0.0
Intermitt. access day 1 inactive lever presses2.02.13.0-0.7-1.61.61.7
Intermitt. access day 15 inactive lever presses3.64.05.8-0.9-2.12.22.4
Intermitt. access escalation Index0.40.30.60.1-0.70.60.8
Intermittent access day 1 total infusions0.60.71.1-0.8-0.41.00.9
Intermittent access day 15 total infusions0.50.50.8-0.1-0.80.90.9
Intermittent access terminal intake (last 3 days)0.00.00.0-0.20.10.20.2
Intermittent access total infusions0.20.20.4-0.4-0.30.70.5
Intermittent access day 1 locomotion0.30.30.5-0.4-0.40.70.6
Intermittent access day 15 total locomotion0.10.20.3-0.2-0.20.50.6
Intermittent access total locomotion0.50.60.9-0.4-0.50.91.0
Intermittent access standard deviation0.91.01.5-0.8-0.71.11.2
Left kidney weight3.810.725.1-5.0-0.73.02.9
Right kidney weight4.713.130.5-5.5-0.73.23.3
Cocaine induced anxiety1.61.82.3-0.8-1.51.51.5
Post-drug Anxiety0.80.91.4-0.5-1.21.01.0
Baseline Anxiety1.31.42.00.90.9-1.4-1.4
Tail length0.10.40.70.30.5-0.8-0.8
Length with tail0.00.10.2-0.40.20.0-0.0
Length without tail0.30.60.9-0.3-0.71.00.9
Times rat made contact with spout0.70.81.9-1.4-0.30.70.8
Lifetime Intake1.01.21.8-0.8-0.91.31.2
Liver weight, left0.60.92.0-0.21.4-0.8-0.9
Liver weight, right1.82.95.2-1.12.3-1.6-1.7
Locomotor activity0.30.51.8-1.30.10.40.3
Locomotor testing distance0.00.10.20.4-0.1-0.1-0.2
Locomotor testing rearing0.40.71.8-1.30.9-0.1-0.2
Locomotion in novel chamber3.03.75.20.12.1-2.3-2.2
Locomotion in novel chamber post-restriction1.11.31.81.30.6-1.3-1.1
Fecal boli incidents, locomotor time 10.10.10.30.6-0.2-0.0-0.0
Change in fecal boli incidents, locomotor task0.30.30.7-0.50.8-0.3-0.3
Time >=10cm from walls, locomotor time 10.10.10.20.4-0.20.30.3
Bouts of movement, locomotor time 10.00.00.1-0.10.3-0.2-0.2
Total resting periods, locomotor time 10.00.00.00.1-0.1-0.1-0.1
Rest time, locomotor task time 10.20.20.2-0.4-0.40.40.4
Distance moved, locomotor task time 10.10.10.3-0.30.60.10.1
Vertical activity count, locomotor time 10.20.30.50.2-0.30.60.7
Time >=10cm from walls, locomotor time 20.30.30.50.50.4-0.6-0.7
Bouts of movement, locomotor time 20.20.30.4-0.2-0.60.50.6
Total resting periods, locomotor time 20.40.40.6-0.2-0.80.70.7
Rest time, locomotor task time 20.00.10.10.2-0.30.20.1
Distance moved, locomotor task time 20.40.50.9-1.00.9-0.2-0.2
Vertical activity count, locomotor time 20.20.20.5-0.70.30.20.3
Light reinforcement 10.20.30.40.50.6-0.6-0.6
Light reinforcement 20.10.20.40.10.6-0.3-0.4
Bone: marrow area0.20.41.0-0.31.0-0.5-0.5
Bone: maximum diameter0.91.74.8-2.20.31.01.0
Bone: maximum force1.93.34.4-1.8-1.12.12.1
Bone: maximum moment2.23.85.1-2.0-1.22.22.3
Mean time between licks in bursts0.20.30.50.10.4-0.7-0.6
Mean num. licks in bursts0.70.82.3-1.50.10.70.7
Cd content in liver2.02.26.5-2.51.3-0.6-0.4
Co content in liver0.80.93.0-1.7-0.00.50.5
Cu content in liver1.72.07.32.7-0.5-0.5-0.5
Fe content in liver0.10.10.20.5-0.20.10.1
K content in liver1.81.82.81.5-1.71.11.0
Mg content in liver3.23.24.72.1-2.21.41.4
Mn content in liver0.40.50.7-0.00.8-0.8-0.7
Na content in liver0.90.93.01.7-0.4-0.4-0.5
Rb content in liver0.50.60.90.5-1.00.90.7
Se content in liver0.70.92.11.40.2-0.8-0.9
Sr content in liver0.80.71.0-0.50.9-1.0-0.8
Zn content in liver0.40.41.01.00.2-0.7-0.6
Bone: minimum diameter0.10.20.6-0.40.7-0.2-0.2
Time in familiar zone, hab. session 10.40.30.5-0.00.6-0.7-0.7
Time in novel zone, hab. session 10.70.72.6-1.60.40.30.2
Total zone transitions, hab. session 11.62.34.32.10.5-1.5-1.5
Total locomotion distance, hab. session 12.12.93.61.81.2-1.9-1.9
Locomotion velocity, hab. session 11.72.44.72.20.7-1.5-1.5
Time in familiar zone, hab. session 22.72.84.2-0.42.0-1.9-1.8
Time in novel zone, hab. session 22.22.23.1-0.4-1.71.81.6
Total zone transitions, hab. session 20.50.71.81.3-0.90.30.3
Total locomotion distance, hab. session 20.30.41.21.1-0.5-0.00.1
Locomotion velocity, hab. session 20.50.72.41.6-0.5-0.2-0.1
Novel to familiar place preference ratio1.51.55.4-2.30.70.40.2
Novelty place preference2.12.17.4-2.71.00.30.1
Time in novel zone, NPP test2.52.59.0-3.01.00.40.2
Total zone transitions, NPP test0.71.02.81.70.1-1.0-0.7
Total locomotion distance, NPP test0.40.51.71.3-0.3-0.4-0.1
Locomotion velocity, NPP test0.81.13.21.80.1-0.9-0.6
Intraocular pressure0.20.30.5-0.70.7-0.2-0.3
Delta distance traveled before/after self-admin0.20.20.6-0.80.30.30.3
Delta ambulatory time before/after self-admin0.40.40.7-0.8-0.10.70.7
Parametrial fat weight0.10.20.4-0.6-0.00.40.3
Pavlov. Cond. lever latency0.70.93.3-1.80.70.10.1
Pavlov. Cond. magazine entry latency0.20.30.80.9-0.70.20.2
Pavlov. Cond. change in total contacts0.90.91.61.1-1.30.70.7
Pavlov. Cond. index score0.40.61.00.8-1.00.50.6
Pavlov. Cond. latency score0.40.51.00.8-1.00.40.5
Pavlov. Cond. lever contacts0.60.72.51.6-0.7-0.1-0.1
Pavlov. Cond. magazine entry number0.10.10.3-0.50.5-0.1-0.2
Pavlov. Cond. intertrial magazine entries0.50.61.10.9-1.00.50.5
Pavlov. Cond. lever-magazine prob. diff.0.40.51.01.0-0.80.30.3
Pavlov. Cond. response bias0.40.51.51.2-0.70.20.2
Pavlov. Cond. lever latency2.02.73.8-1.81.9-1.4-1.3
Pavlov. Cond. magazine entry latency5.05.78.92.7-3.01.81.8
Pavlov. Cond. change in total contacts6.48.913.32.0-3.73.13.0
Pavlov. Cond. index score4.35.58.32.5-2.92.01.9
Pavlov. Cond. latency score4.96.19.32.6-3.02.12.1
Pavlov. Cond. lever contacts2.83.85.32.1-2.31.71.6
Pavlov. Cond. magazine entry number4.55.58.3-2.42.9-1.9-2.0
Pavlov. Cond. intertrial magazine entries2.02.68.8-3.00.40.80.8
Pavlov. Cond. lever-magazine prob. diff.4.25.37.62.7-2.81.81.8
Pavlov. Cond. response bias3.64.97.32.2-2.71.91.9
Time in closed arm before self-admin1.41.65.22.3-0.8-0.5-0.5
Time in closed arm after self-admin0.20.20.4-0.60.5-0.2-0.2
Time in open arm before self-admin0.70.71.4-0.01.2-0.8-0.8
Time in open arm after self-admin1.11.21.60.51.2-1.3-1.3
Bone: periosteal estimation0.20.41.1-1.00.70.10.1
Bone: periosteal perimeter0.81.33.0-1.71.4-0.3-0.3
Bone: post-yield work0.70.91.3-0.7-0.81.11.1
Progressive ratio test 1 active lever presses0.80.81.3-0.5-0.81.11.0
Progressive ratio test 1 breakpoint0.20.30.4-0.3-0.40.70.6
Progressive ratio test 1 inactive lever presses2.12.33.2-0.6-1.71.81.7
Progressive ratio test 2 active lever presses0.91.01.40.1-1.21.21.0
Progressive ratio test 2 breakpoint1.31.52.1-0.1-1.41.51.3
Progressive ratio test 2 inactive lever presses2.12.44.00.2-2.01.71.6
Incentive Sensitization - Responses1.01.01.80.3-1.31.01.0
Incentive Sensitization - Breakpoint1.21.22.10.1-1.41.21.1
Sum of active levers in priming session hrs 5-60.10.10.10.4-0.3-0.0-0.0
Progressive ratio0.50.60.90.3-1.00.70.8
Food seeking constrained by brief footshock0.30.41.0-1.00.00.50.6
Seeking ratio, punishment vs. effort0.10.20.5-0.70.40.0-0.2
Retroperitoneal fat weight0.62.06.7-2.61.00.50.5
Reaction time number correct1.62.32.81.51.2-1.7-1.6
Reaction time mean minus median0.81.02.5-1.61.1-0.5-0.5
Reaction time mean minus median AUC1.11.54.1-2.01.2-0.4-0.4
Reaction time num false alarms1.01.42.10.01.3-1.5-1.3
Reaction time num false alarms AUC0.91.32.00.11.2-1.4-1.3
Reaction time trials correct on left1.62.32.81.51.2-1.7-1.6
Reaction time trials on left1.72.43.01.51.2-1.7-1.7
Reaction time mean0.00.00.0-0.2-0.0-0.00.1
Reaction time mean AUC0.00.00.0-0.10.0-0.10.0
Median of all reaction times0.10.10.20.4-0.40.10.3
Reaction time omissions0.40.50.7-0.30.8-0.8-0.8
Reaction time false alarm rate0.20.30.7-0.90.5-0.4-0.3
Reaction time premature initiation rate2.53.44.51.5-2.11.91.9
Reaction time premature initiations1.31.83.21.8-1.41.01.0
Std. dev. reaction times0.50.62.1-1.40.7-0.1-0.0
Reaction time trials completed1.72.43.01.51.2-1.7-1.7
Reaction time trials AUC1.42.02.31.51.0-1.5-1.5
Run reversals in cocaine runway, females2.32.22.91.41.4-1.7-1.5
Run reversals in cocaine runway, males0.30.30.7-0.80.7-0.2-0.2
Latency to leave start box in cocaine runway0.00.00.1-0.40.10.1-0.0
Latency to leave start box in cocaine runway, F0.20.20.40.70.2-0.4-0.5
Latency to leave start box in cocaine runway, M1.21.22.4-1.5-0.31.11.0
Std. dev. time between licks in bursts1.31.62.31.5-1.50.71.0
Total sessions with >9 infusions1.21.31.8-1.2-0.71.31.3
Short access day 1 total inactive lever presses1.92.23.1-1.2-1.11.71.8
Short access day 10 total inactive lever presses0.40.40.7-0.8-0.20.40.8
Short access day 1 total infusions1.61.72.1-1.4-0.91.41.4
Short access day 10 total infusions0.40.40.7-0.6-0.40.80.7
Short access total infusions2.02.33.1-1.4-1.11.81.6
Short access day 1 locomotion0.30.30.6-0.2-0.50.70.8
Short access day 10 total locomotion0.00.00.00.20.1-0.1-0.0
Short access total locomotion0.50.50.7-0.8-0.40.80.8
One hour access (0.3 mA shock)0.00.10.10.30.1-0.2-0.3
Compulsive drug intake0.40.41.01.0-0.5-0.4-0.4
One hour access (shock baseline)0.10.10.4-0.00.6-0.2-0.2
Social response proportion1.01.01.7-0.6-1.01.11.3
Social responses0.00.10.10.30.1-0.30.0
Social time0.50.72.21.5-0.4-0.6-0.1
Soleus weight0.10.40.80.2-0.90.50.6
Bone: stiffness1.01.62.2-1.3-0.71.51.4
Tibialis anterior weight0.10.20.60.2-0.80.20.2
Time to tail flick, vehicle, before self-admin0.00.00.1-0.30.2-0.1-0.1
Time to tail flick, vehicle, after self-admin2.42.53.60.71.6-1.9-1.9
Time to tail flick, test, before self-admin1.21.22.1-0.21.4-1.2-1.2
Time to tail flick, test, after self-admin0.80.81.00.80.8-1.0-1.0
Delta time to tail flick, vehicle, before/after SA0.00.00.10.3-0.20.00.0
Delta time to tail flick, test, before/after SA0.50.41.51.2-0.3-0.2-0.2
Tibia length0.30.91.4-0.9-0.61.21.1
Ambulatory time before self-admin0.40.40.80.2-0.90.60.6
Ambulatory time after self-admin0.60.70.90.4-1.00.90.9
Bone: tissue strength0.50.50.90.2-0.70.70.9
Total heroin consumption0.30.40.7-0.2-0.90.60.6
Bone: trabecular number0.30.50.70.40.8-0.8-0.6
Bone: trabecular spacing0.60.71.2-1.1-0.50.90.9
Bone: trabecular thickness0.10.20.60.8-0.1-0.1-0.2
Bone: trabecular tissue density0.70.92.00.9-1.40.80.7
Water consumed over 24 hours0.81.02.1-1.4-0.40.91.0
Number of responses in last shaping day1.11.22.40.9-1.50.90.8