Mta2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye gene expression Mta2 0.42 0.18 3.4e-03 0.07 0.07 0.06 0.08 3.2e-02 3.1e-02 4.8e-02 2.3e-02
2 LHb gene expression Mta2 0.11 0.08 7.8e-03 0.02 0.03 -0 -0 1.1e-01 6.4e-02 3.5e-01 3.4e-01
3 Adipose gene expression Mta2 0.06 0.04 4.6e-04 0.01 0.01 0.01 0.01 4.5e-02 7.4e-03 2.9e-02 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.4-0.0-0.6-0.0
Area under the delay curve0.20.30.6-0.8-0.1-0.6
BMI with tail0.82.96.0-1.1-2.5-1.2
BMI without tail0.63.05.6-2.4-1.1-1.5
Body weight1.67.013.2-1.6-3.6-2.3
Weight adjusted by age0.20.51.00.7-1.0-0.1
Bone surface0.81.63.51.2-1.90.0
Bone volume0.50.91.31.2-1.10.5
Breakpoint value in progressive ratio session0.81.43.30.7-1.8-0.5
Number of licking bursts0.00.00.00.00.0-0.1
Context. condit. distance diff. score0.40.50.9-1.00.6-0.3
Locomotion velocity, session 10.70.81.2-1.10.0-1.1
Locomotion distance, session 10.81.01.5-1.0-0.7-1.2
Locomotion velocity, session 21.41.63.2-0.8-1.8-1.0
Locomotion distance, session 21.21.73.6-1.9-0.6-1.1
Locomotion velocity, session 30.40.40.7-0.9-0.4-0.7
Locomotion distance, session 30.20.20.6-0.3-0.2-0.8
Stereotopy head waving bouts, day 30.91.02.9-1.70.40.1
Stereotopy head waving duration, day 30.81.02.9-1.70.3-0.2
Locomotion velocity, session 70.20.20.5-0.70.00.2
Locomotion distance, session 70.50.61.3-1.20.2-0.7
Stereotopy head waving bouts, day 70.20.20.40.4-0.40.6
Stereotopy head waving duration, day 70.50.61.9-0.1-1.4-0.2
Locomotion velocity, session 81.21.53.1-1.80.0-1.2
Locomotion distance, session 80.40.61.5-1.20.70.0
Degree of sensitization distance0.20.20.5-0.70.20.2
Degree of sensitization stereotypy0.60.61.00.8-1.00.5
Conditioned locomotion1.21.53.2-1.8-0.9-0.7
Cocaine response after cond. corrected0.91.43.0-1.70.8-0.7
Cocaine response after cond. not corrected0.10.20.5-0.10.7-0.3
Cocaine response before conditioning4.55.415.13.9-0.50.9
Saline control response1.92.64.10.1-2.0-1.9
Bone: connectivity density0.61.02.50.2-1.6-0.7
Bone: cortical apparent density0.30.50.91.0-0.7-0.4
Bone: cortical area0.61.01.91.4-1.10.2
Bone: cortical porosity0.10.10.4-0.6-0.10.1
Bone: cortical porosity0.40.41.1-1.0-0.3-0.3
Bone: cortical thickness2.13.56.30.2-2.5-2.1
Bone: cortical thickness0.70.91.8-0.5-0.7-1.4
Bone: cortical tissue density0.40.60.80.9-0.9-0.6
Condit. Reinf. active minus inactive responses0.50.61.20.6-1.1-0.5
Condit. Reinf. active-inactive response ratio0.40.40.60.4-0.8-0.7
Condit. Reinf. active responses0.50.61.00.9-1.00.3
Condit. Reinf. inactive responses0.70.91.70.90.21.3
Incentive salience index mean0.60.71.40.7-1.2-0.5
Condit. Reinf. lever presses0.40.71.01.0-0.9-0.2
Condit. Reinf. active minus inactive responses1.11.62.91.70.41.3
Condit. Reinf. active-inactive response ratio1.72.64.91.60.82.2
Condit. Reinf. active responses0.40.61.51.2-0.30.3
Condit. Reinf. inactive responses0.50.72.00.0-0.5-1.4
Condit. Reinf. lever presses0.71.01.91.4-1.00.2
Condit. Reinf. lever reinforcers received0.50.71.81.3-0.50.3
Conditioned reinforcement - actives0.83.25.32.30.52.0
Conditioned reinforcement - inactives0.92.64.12.00.31.8
Conditioned locomotion1.42.03.20.51.81.6
Patch foraging indifference point 0 sec0.20.50.9-0.2-0.9-0.7
Patch foraging indifference point AUC0.71.72.71.6-1.40.6
Delay disc. indifference point, 0s delay0.50.61.2-1.10.7-0.4
Delay disc. indifference point, 16s delay0.10.10.20.4-0.20.2
Delay disc. indifference point, 2s delay0.30.30.40.30.60.6
Delay disc. indifference point, 24s delay0.30.60.9-0.8-0.3-0.9
Delay disc. indifference point, 4s delay1.41.52.1-1.5-0.5-1.5
Delay disc. indifference point, 8s delay0.50.91.9-1.40.5-0.7
Indifference point function ln k1.23.55.6-2.12.4-0.8
Indifference point function log k1.23.55.6-2.12.4-0.8
Patch foraging total patch changes 0 sec0.30.81.4-0.3-1.0-1.2
Patch foraging total patch changes 12 sec2.83.89.50.6-3.1-1.2
Patch foraging total patch changes 18 sec0.20.51.00.8-1.0-0.0
Patch foraging total patch changes 24 sec1.24.08.9-0.4-3.0-1.7
Patch foraging total patch changes 6 sec0.61.01.90.2-1.4-1.1
Patch foraging time to switch 0 sec0.10.50.80.9-0.60.7
Patch foraging water rate 0 sec0.10.30.7-0.20.8-0.3
Patch foraging water rate 12 sec0.52.03.1-1.41.8-0.9
Patch foraging water rate 18 sec0.92.02.8-1.70.9-1.5
Patch foraging water rate 24 sec0.50.81.9-0.61.4-0.3
Patch foraging water rate 6 sec1.21.72.2-1.51.5-1.0
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.2-0.1-0.3
Distance traveled before self-admin0.61.32.61.2-1.60.2
Distance traveled after self-admin0.20.40.70.8-0.8-0.1
Extensor digitorum longus weight3.413.526.2-1.9-5.1-3.3
Bone: elastic displacement0.81.02.4-1.60.5-0.7
Bone: elastic work2.02.63.6-1.7-1.2-1.9
Bone: endosteal estimation0.92.33.90.11.72.0
Bone: endosteal perimeter2.15.09.21.12.23.0
Epididymis fat weight0.73.76.31.31.82.5
Delta time in closed arm before/after self-admin4.54.26.2-2.3-1.1-2.5
Delta time in open arm before/after self-admin1.61.93.21.8-1.40.7
Diff in mean of infusions in LGA sessions1.11.93.6-0.4-1.9-1.4
Delay discount exponential model param0.20.30.50.70.20.6
Extinction: sum of active levers before priming1.21.84.40.5-2.1-0.9
Active lever presses in extinction session 62.12.13.21.7-1.80.2
Bone: final force0.91.42.31.3-1.5-0.3
Bone: final moment0.81.32.41.1-1.6-0.4
Food consumed during 24 hour testing period0.40.81.91.40.40.7
Glucose1.32.14.6-0.62.21.1
Heart weight1.11.84.3-2.10.7-0.7
Delay discount hyperbolic model param0.10.20.30.60.10.5
Intermittent access intake day 1-15 change0.74.05.62.11.52.4
Intermittent access intake escalation0.94.96.82.31.72.6
Intermittent access intake escalation 21.93.34.82.20.82.1
Intermitt. access day 1 inactive lever presses0.11.72.31.21.21.5
Intermitt. access day 15 inactive lever presses0.42.14.22.0-0.61.3
Intermitt. access escalation Index0.20.60.9-0.90.9-0.2
Intermittent access day 1 total infusions0.30.91.60.51.01.3
Intermittent access day 15 total infusions2.86.810.12.12.43.2
Intermittent access terminal intake (last 3 days)2.95.07.92.31.42.8
Intermittent access total infusions2.42.84.61.41.42.1
Intermittent access day 1 locomotion0.10.20.40.20.40.7
Intermittent access day 15 total locomotion0.82.94.42.00.62.1
Intermittent access total locomotion3.23.96.22.20.82.5
Intermittent access standard deviation0.31.82.51.31.11.6
Left kidney weight0.11.01.80.60.81.3
Right kidney weight0.10.61.20.50.61.1
Cocaine induced anxiety0.20.51.21.1-0.20.6
Post-drug Anxiety0.20.30.40.7-0.60.1
Baseline Anxiety0.81.41.9-1.4-0.6-1.4
Tail length0.42.22.8-1.5-1.2-1.7
Length with tail0.83.56.3-0.6-2.5-2.0
Length without tail1.15.69.9-0.8-3.2-2.5
Times rat made contact with spout0.50.61.3-0.5-0.4-1.1
Lifetime Intake1.01.32.00.61.21.4
Liver weight, left0.50.92.0-0.61.40.6
Liver weight, right0.61.13.0-0.51.70.1
Locomotor activity1.21.93.0-1.71.0-1.3
Locomotor testing distance0.71.72.0-1.31.1-1.4
Locomotor testing rearing0.20.71.6-0.31.3-0.8
Locomotion in novel chamber1.72.23.10.91.71.8
Locomotion in novel chamber post-restriction0.72.12.90.61.71.7
Fecal boli incidents, locomotor time 10.82.13.11.70.51.8
Change in fecal boli incidents, locomotor task1.21.32.3-1.51.1-0.6
Time >=10cm from walls, locomotor time 13.44.37.11.71.62.7
Bouts of movement, locomotor time 10.30.40.80.9-0.70.1
Total resting periods, locomotor time 10.50.61.31.1-0.60.4
Rest time, locomotor task time 10.81.22.10.41.41.2
Distance moved, locomotor task time 10.10.20.3-0.0-0.5-0.4
Vertical activity count, locomotor time 10.00.20.6-0.20.70.2
Time >=10cm from walls, locomotor time 20.61.72.91.70.21.5
Bouts of movement, locomotor time 20.20.71.60.1-1.3-0.6
Total resting periods, locomotor time 20.10.30.70.1-0.8-0.3
Rest time, locomotor task time 21.11.84.0-0.12.01.2
Distance moved, locomotor task time 20.30.40.80.3-0.9-0.5
Vertical activity count, locomotor time 20.20.60.9-0.9-0.1-1.0
Light reinforcement 10.10.51.41.20.20.1
Light reinforcement 21.73.96.42.50.52.3
Bone: marrow area1.02.64.1-0.11.92.0
Bone: maximum diameter0.51.01.51.2-0.21.2
Bone: maximum force1.12.13.51.7-1.90.0
Bone: maximum moment1.01.93.61.4-1.9-0.1
Mean time between licks in bursts0.63.86.3-2.5-0.6-2.2
Mean num. licks in bursts0.00.10.2-0.40.1-0.4
Cd content in liver1.01.21.90.81.01.4
Co content in liver0.40.50.6-0.50.8-0.8
Cu content in liver0.00.00.1-0.2-0.0-0.3
Fe content in liver0.00.10.2-0.40.1-0.1
K content in liver0.40.40.70.9-0.5-0.5
Mg content in liver0.10.20.4-0.2-0.0-0.7
Mn content in liver2.12.43.81.8-1.9-0.5
Na content in liver1.11.33.51.9-0.5-0.0
Rb content in liver1.51.73.3-1.31.80.1
Se content in liver0.80.92.01.4-0.20.9
Sr content in liver2.11.84.5-0.1-2.1-0.9
Zn content in liver1.51.83.5-0.8-1.9-1.1
Bone: minimum diameter0.91.83.70.31.21.9
Time in familiar zone, hab. session 10.10.20.40.7-0.1-0.1
Time in novel zone, hab. session 10.40.51.4-0.11.20.0
Total zone transitions, hab. session 10.20.20.3-0.1-0.6-0.6
Total locomotion distance, hab. session 10.20.30.40.60.30.7
Locomotion velocity, hab. session 10.10.10.10.4-0.40.3
Time in familiar zone, hab. session 20.20.20.30.40.5-0.5
Time in novel zone, hab. session 20.20.20.5-0.5-0.7-0.2
Total zone transitions, hab. session 20.81.11.7-0.1-1.2-1.3
Total locomotion distance, hab. session 20.10.10.20.4-0.3-0.4
Locomotion velocity, hab. session 20.10.10.30.5-0.10.0
Novel to familiar place preference ratio0.60.82.4-0.2-1.6-0.2
Novelty place preference0.40.51.4-0.3-1.20.0
Time in novel zone, NPP test0.50.61.5-0.4-1.2-0.2
Total zone transitions, NPP test0.91.31.7-0.7-1.3-1.3
Total locomotion distance, NPP test0.30.40.7-0.8-0.3-0.6
Locomotion velocity, NPP test0.20.20.5-0.7-0.2-0.4
Intraocular pressure0.10.10.2-0.20.30.4
Delta distance traveled before/after self-admin0.70.71.0-1.00.5-0.9
Delta ambulatory time before/after self-admin0.50.81.3-1.10.8-0.8
Parametrial fat weight1.84.27.40.82.12.7
Pavlov. Cond. lever latency0.81.02.0-1.41.00.2
Pavlov. Cond. magazine entry latency3.03.810.03.2-1.00.7
Pavlov. Cond. change in total contacts4.04.311.13.3-0.51.2
Pavlov. Cond. index score2.02.56.62.6-0.80.4
Pavlov. Cond. latency score1.41.84.72.2-0.70.2
Pavlov. Cond. lever contacts0.70.82.21.5-0.60.0
Pavlov. Cond. magazine entry number2.73.48.9-3.01.0-0.5
Pavlov. Cond. intertrial magazine entries0.20.20.40.3-0.30.7
Pavlov. Cond. lever-magazine prob. diff.2.22.77.02.7-0.90.6
Pavlov. Cond. response bias2.93.69.63.1-1.00.5
Pavlov. Cond. lever latency0.50.71.6-1.30.7-0.2
Pavlov. Cond. magazine entry latency3.24.56.82.5-2.6-0.8
Pavlov. Cond. change in total contacts1.63.99.33.1-1.30.7
Pavlov. Cond. index score2.33.77.52.7-1.90.1
Pavlov. Cond. latency score2.33.77.82.8-1.80.3
Pavlov. Cond. lever contacts0.81.12.81.7-0.70.3
Pavlov. Cond. magazine entry number4.55.810.4-2.63.20.8
Pavlov. Cond. intertrial magazine entries0.61.22.3-0.41.51.1
Pavlov. Cond. lever-magazine prob. diff.2.64.07.92.8-2.00.1
Pavlov. Cond. response bias1.52.03.31.8-1.6-0.3
Time in closed arm before self-admin0.61.11.81.10.31.3
Time in closed arm after self-admin0.50.61.0-0.81.0-0.0
Time in open arm before self-admin3.64.48.5-2.90.9-2.0
Time in open arm after self-admin0.70.81.1-0.7-0.8-1.1
Bone: periosteal estimation0.51.12.30.90.31.5
Bone: periosteal perimeter0.71.42.11.50.21.5
Bone: post-yield work2.13.76.02.50.52.2
Progressive ratio test 1 active lever presses0.30.50.80.50.70.9
Progressive ratio test 1 breakpoint0.40.61.00.70.71.0
Progressive ratio test 1 inactive lever presses0.10.30.70.4-0.8-0.1
Progressive ratio test 2 active lever presses2.13.04.71.81.12.2
Progressive ratio test 2 breakpoint2.33.04.61.81.12.1
Progressive ratio test 2 inactive lever presses1.03.35.02.00.92.2
Incentive Sensitization - Responses0.41.22.31.5-0.60.9
Incentive Sensitization - Breakpoint0.61.32.51.6-0.51.1
Sum of active levers in priming session hrs 5-63.43.26.52.6-1.11.3
Progressive ratio0.10.40.70.60.20.9
Food seeking constrained by brief footshock0.10.20.4-0.60.2-0.3
Seeking ratio, punishment vs. effort0.71.62.6-1.6-0.0-1.4
Retroperitoneal fat weight2.08.818.7-0.94.32.6
Reaction time number correct0.20.71.6-0.0-0.7-1.2
Reaction time mean minus median0.21.62.21.5-0.81.3
Reaction time mean minus median AUC0.10.50.80.9-0.50.7
Reaction time num false alarms1.22.13.6-1.90.4-1.6
Reaction time num false alarms AUC1.43.35.7-2.4-0.2-2.1
Reaction time trials correct on left0.20.71.6-0.0-0.7-1.2
Reaction time trials on left0.20.71.6-0.1-0.8-1.3
Reaction time mean0.71.52.81.70.11.4
Reaction time mean AUC0.71.72.91.70.31.5
Median of all reaction times0.71.02.01.40.11.0
Reaction time omissions0.10.20.60.3-0.8-0.0
Reaction time false alarm rate1.21.73.8-2.00.3-1.1
Reaction time premature initiation rate2.94.57.4-0.7-2.4-2.7
Reaction time premature initiations2.06.210.7-0.7-2.7-3.3
Std. dev. reaction times0.31.11.81.2-0.01.3
Reaction time trials completed0.20.71.6-0.1-0.8-1.3
Reaction time trials AUC0.20.71.6-0.1-0.7-1.3
Run reversals in cocaine runway, females2.32.54.7-2.2-0.5-1.7
Run reversals in cocaine runway, males0.30.30.5-0.70.60.2
Latency to leave start box in cocaine runway0.30.40.60.30.80.6
Latency to leave start box in cocaine runway, F0.00.00.00.1-0.1-0.0
Latency to leave start box in cocaine runway, M1.31.22.60.21.61.0
Std. dev. time between licks in bursts0.91.73.3-1.80.3-1.3
Total sessions with >9 infusions0.40.61.2-0.01.10.7
Short access day 1 total inactive lever presses0.00.10.1-0.40.30.0
Short access day 10 total inactive lever presses0.00.30.6-0.40.80.2
Short access day 1 total infusions0.50.92.0-0.31.40.8
Short access day 10 total infusions0.30.50.80.30.80.9
Short access total infusions0.40.51.1-0.61.00.4
Short access day 1 locomotion0.20.40.60.40.60.8
Short access day 10 total locomotion0.10.50.80.80.10.9
Short access total locomotion0.40.50.90.70.51.0
One hour access (0.3 mA shock)1.82.13.31.21.31.8
Compulsive drug intake2.02.94.5-1.8-1.1-2.1
One hour access (shock baseline)2.56.610.02.22.23.2
Social response proportion0.10.10.10.2-0.2-0.4
Social responses0.20.20.5-0.1-0.3-0.7
Social time0.40.61.1-1.1-0.1-0.7
Soleus weight1.33.99.6-0.23.11.4
Bone: stiffness1.01.83.82.0-0.80.9
Tibialis anterior weight4.515.534.8-1.5-5.9-3.1
Time to tail flick, vehicle, before self-admin0.10.10.20.1-0.20.4
Time to tail flick, vehicle, after self-admin0.20.50.7-0.8-0.5-0.7
Time to tail flick, test, before self-admin1.21.43.2-1.8-0.3-0.9
Time to tail flick, test, after self-admin0.30.30.50.7-0.10.6
Delta time to tail flick, vehicle, before/after SA0.50.50.8-0.6-0.5-0.9
Delta time to tail flick, test, before/after SA1.21.53.51.9-0.21.0
Tibia length1.64.58.52.9-2.01.0
Ambulatory time before self-admin0.61.83.01.7-1.50.6
Ambulatory time after self-admin0.40.61.61.3-0.40.4
Bone: tissue strength0.20.20.40.30.7-0.1
Total heroin consumption3.13.78.60.4-2.9-1.5
Bone: trabecular number0.30.51.3-0.1-1.2-0.3
Bone: trabecular spacing0.20.30.50.20.7-0.5
Bone: trabecular thickness0.40.51.20.20.51.1
Bone: trabecular tissue density1.83.17.20.02.71.4
Water consumed over 24 hours0.30.71.20.1-0.9-1.1
Number of responses in last shaping day0.70.91.3-1.1-0.5-1.1