Mrpl33

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Mrpl33 0.04 0.04 5.1e-04 0.02 0.02 0.02 0.01 6.2e-03 1.9e-03 5.0e-03 8.2e-03
2 NAcc mRNA stability Mrpl33 0.02 0.01 3.4e-03 0.02 0 0.01 0.01 5.6e-04 6.3e-02 2.5e-03 3.8e-03
3 PL gene expression Mrpl33 0.06 0.07 7.0e-03 0.03 0.01 0.01 0.02 9.4e-04 1.5e-02 7.4e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density3.25.58.7-3.02.02.0
Area under the delay curve0.30.40.6-0.80.50.5
BMI with tail0.20.70.80.9-0.8-0.8
BMI without tail0.61.82.01.4-1.3-1.3
Body weight1.77.48.62.9-2.6-2.6
Weight adjusted by age0.00.00.00.0-0.1-0.1
Bone surface1.52.74.9-2.21.31.3
Bone volume1.42.55.0-2.21.11.1
Breakpoint value in progressive ratio session0.50.61.0-1.00.60.6
Number of licking bursts0.00.10.2-0.40.10.1
Context. condit. distance diff. score0.00.00.0-0.00.10.1
Locomotion velocity, session 10.20.20.30.2-0.5-0.5
Locomotion distance, session 11.92.52.6-1.61.61.6
Locomotion velocity, session 20.10.10.20.40.00.0
Locomotion distance, session 20.10.10.10.00.30.3
Locomotion velocity, session 30.30.30.6-0.80.40.4
Locomotion distance, session 30.80.90.9-0.91.01.0
Stereotopy head waving bouts, day 31.41.72.0-1.41.21.2
Stereotopy head waving duration, day 30.00.00.1-0.30.10.1
Locomotion velocity, session 70.30.31.0-1.0-0.0-0.0
Locomotion distance, session 70.50.60.9-0.1-0.9-0.9
Stereotopy head waving bouts, day 70.40.40.6-0.10.80.8
Stereotopy head waving duration, day 71.21.42.0-0.61.41.4
Locomotion velocity, session 80.00.00.0-0.2-0.1-0.1
Locomotion distance, session 80.30.50.5-0.60.70.7
Degree of sensitization distance2.22.33.00.9-1.7-1.7
Degree of sensitization stereotypy0.20.20.30.40.50.5
Conditioned locomotion3.54.04.2-1.92.02.0
Cocaine response after cond. corrected1.11.31.3-1.11.21.2
Cocaine response after cond. not corrected2.02.32.6-1.61.51.5
Cocaine response before conditioning0.70.81.3-1.20.80.8
Saline control response0.50.60.7-0.80.80.8
Bone: connectivity density3.45.37.6-2.82.02.0
Bone: cortical apparent density0.60.90.9-1.00.90.9
Bone: cortical area0.30.41.2-1.1-0.0-0.0
Bone: cortical porosity1.41.51.8-1.01.31.3
Bone: cortical porosity1.21.31.3-1.11.21.2
Bone: cortical thickness0.00.10.1-0.1-0.3-0.3
Bone: cortical thickness1.11.21.9-1.41.01.0
Bone: cortical tissue density0.50.60.7-0.80.80.8
Condit. Reinf. active minus inactive responses0.91.01.20.7-1.1-1.1
Condit. Reinf. active-inactive response ratio0.91.01.20.8-1.1-1.1
Condit. Reinf. active responses0.10.10.3-0.60.20.2
Condit. Reinf. inactive responses1.62.02.3-1.51.41.4
Incentive salience index mean0.10.10.1-0.2-0.4-0.4
Condit. Reinf. lever presses0.50.71.3-1.10.70.7
Condit. Reinf. active minus inactive responses4.05.25.4-2.22.32.3
Condit. Reinf. active-inactive response ratio1.61.92.3-1.01.51.5
Condit. Reinf. active responses2.23.04.2-2.11.51.5
Condit. Reinf. inactive responses0.60.72.1-1.40.30.3
Condit. Reinf. lever presses2.02.72.9-1.71.61.6
Condit. Reinf. lever reinforcers received2.02.73.7-1.91.51.5
Conditioned reinforcement - actives0.50.91.1-0.71.01.0
Conditioned reinforcement - inactives2.53.63.7-1.91.91.9
Conditioned locomotion0.91.21.60.5-1.3-1.3
Patch foraging indifference point 0 sec1.22.23.00.8-1.7-1.7
Patch foraging indifference point AUC1.21.71.7-1.31.31.3
Delay disc. indifference point, 0s delay1.21.32.01.4-1.0-1.0
Delay disc. indifference point, 16s delay0.30.30.6-0.80.40.4
Delay disc. indifference point, 2s delay0.20.20.20.3-0.5-0.5
Delay disc. indifference point, 24s delay3.03.43.5-1.81.91.9
Delay disc. indifference point, 4s delay0.10.10.1-0.20.30.3
Delay disc. indifference point, 8s delay0.20.20.4-0.60.40.4
Indifference point function ln k0.00.00.00.0-0.0-0.0
Indifference point function log k0.00.00.00.0-0.0-0.0
Patch foraging total patch changes 0 sec1.02.02.70.8-1.6-1.6
Patch foraging total patch changes 12 sec1.62.12.51.1-1.6-1.6
Patch foraging total patch changes 18 sec0.30.50.70.4-0.8-0.8
Patch foraging total patch changes 24 sec1.42.32.71.3-1.6-1.6
Patch foraging total patch changes 6 sec0.20.30.30.4-0.6-0.6
Patch foraging time to switch 0 sec0.00.00.0-0.1-0.2-0.2
Patch foraging water rate 0 sec0.00.00.00.20.10.1
Patch foraging water rate 12 sec0.71.52.41.6-1.0-1.0
Patch foraging water rate 18 sec0.40.70.91.0-0.7-0.7
Patch foraging water rate 24 sec1.92.63.01.7-1.6-1.6
Patch foraging water rate 6 sec0.81.21.91.4-0.9-0.9
Seeking ratio, delayed vs. immediate footshock0.20.20.20.5-0.5-0.5
Distance traveled before self-admin0.10.10.2-0.00.40.4
Distance traveled after self-admin1.31.62.11.4-1.1-1.1
Extensor digitorum longus weight3.814.918.4-4.33.63.6
Bone: elastic displacement1.21.41.8-0.91.31.3
Bone: elastic work1.01.31.4-1.21.11.1
Bone: endosteal estimation0.20.51.5-1.20.20.2
Bone: endosteal perimeter0.10.20.7-0.80.00.0
Epididymis fat weight15.753.857.47.6-7.2-7.2
Delta time in closed arm before/after self-admin0.00.00.0-0.10.10.1
Delta time in open arm before/after self-admin0.10.10.2-0.4-0.1-0.1
Diff in mean of infusions in LGA sessions0.10.10.1-0.0-0.3-0.3
Delay discount exponential model param0.70.71.21.1-0.7-0.7
Extinction: sum of active levers before priming0.40.50.6-0.80.60.6
Active lever presses in extinction session 60.10.10.2-0.4-0.2-0.2
Bone: final force0.30.50.6-0.4-0.8-0.8
Bone: final moment0.30.50.6-0.5-0.8-0.8
Food consumed during 24 hour testing period0.10.10.2-0.50.30.3
Glucose0.40.60.60.7-0.8-0.8
Heart weight3.35.25.32.2-2.3-2.3
Delay discount hyperbolic model param0.30.30.80.9-0.4-0.4
Intermittent access intake day 1-15 change0.10.20.30.2-0.6-0.6
Intermittent access intake escalation0.20.40.60.4-0.7-0.7
Intermittent access intake escalation 20.70.81.10.4-1.1-1.1
Intermitt. access day 1 inactive lever presses0.20.90.9-1.00.90.9
Intermitt. access day 15 inactive lever presses2.65.45.4-2.32.32.3
Intermitt. access escalation Index0.60.91.10.7-1.1-1.1
Intermittent access day 1 total infusions2.64.14.3-2.12.02.0
Intermittent access day 15 total infusions0.60.91.2-1.10.80.8
Intermittent access terminal intake (last 3 days)1.01.31.8-1.41.01.0
Intermittent access total infusions1.61.92.1-1.31.41.4
Intermittent access day 1 locomotion1.21.62.2-1.51.11.1
Intermittent access day 15 total locomotion0.00.00.1-0.20.10.1
Intermittent access total locomotion0.10.10.1-0.30.20.2
Intermittent access standard deviation0.30.71.0-1.00.70.7
Left kidney weight0.00.00.00.1-0.0-0.0
Right kidney weight0.20.71.11.0-0.7-0.7
Cocaine induced anxiety0.00.10.2-0.4-0.1-0.1
Post-drug Anxiety0.80.81.21.1-0.8-0.8
Baseline Anxiety1.51.73.31.8-1.0-1.0
Tail length0.51.82.11.5-1.3-1.3
Length with tail1.77.68.62.9-2.7-2.7
Length without tail0.61.92.01.4-1.4-1.4
Times rat made contact with spout1.92.22.8-1.71.41.4
Lifetime Intake1.41.71.8-1.31.31.3
Liver weight, left3.86.36.42.5-2.5-2.5
Liver weight, right10.317.918.14.2-4.2-4.2
Locomotor activity0.10.20.30.3-0.5-0.5
Locomotor testing distance0.10.30.5-0.70.40.4
Locomotor testing rearing0.20.40.8-0.90.40.4
Locomotion in novel chamber1.41.82.40.7-1.6-1.6
Locomotion in novel chamber post-restriction2.33.84.22.0-1.9-1.9
Fecal boli incidents, locomotor time 10.71.01.3-0.61.11.1
Change in fecal boli incidents, locomotor task3.43.34.32.1-1.7-1.7
Time >=10cm from walls, locomotor time 10.20.20.3-0.00.60.6
Bouts of movement, locomotor time 12.22.52.8-1.71.51.5
Total resting periods, locomotor time 12.42.63.0-1.71.61.6
Rest time, locomotor task time 10.10.20.20.3-0.5-0.5
Distance moved, locomotor task time 10.81.21.31.0-1.1-1.1
Vertical activity count, locomotor time 10.10.20.30.6-0.2-0.2
Time >=10cm from walls, locomotor time 20.00.10.1-0.3-0.2-0.2
Bouts of movement, locomotor time 20.10.10.10.10.40.4
Total resting periods, locomotor time 20.20.30.4-0.10.70.7
Rest time, locomotor task time 21.31.71.9-1.41.21.2
Distance moved, locomotor task time 22.53.03.71.2-1.9-1.9
Vertical activity count, locomotor time 20.71.01.01.0-1.0-1.0
Light reinforcement 11.94.77.7-2.81.81.8
Light reinforcement 22.53.94.9-2.21.81.8
Bone: marrow area0.20.51.5-1.20.20.2
Bone: maximum diameter0.51.02.5-1.60.50.5
Bone: maximum force0.20.40.4-0.5-0.6-0.6
Bone: maximum moment0.20.40.4-0.6-0.6-0.6
Mean time between licks in bursts1.12.73.61.9-1.5-1.5
Mean num. licks in bursts0.10.20.2-0.30.40.4
Cd content in liver0.00.00.0-0.10.20.2
Co content in liver5.46.27.9-2.82.32.3
Cu content in liver0.00.10.1-0.30.20.2
Fe content in liver0.30.30.6-0.80.40.4
K content in liver0.20.20.5-0.70.40.4
Mg content in liver0.20.20.6-0.80.30.3
Mn content in liver0.00.00.0-0.2-0.1-0.1
Na content in liver0.20.20.4-0.60.40.4
Rb content in liver0.00.00.0-0.20.00.0
Se content in liver0.50.60.80.5-0.9-0.9
Sr content in liver0.10.10.10.3-0.3-0.3
Zn content in liver1.11.21.31.0-1.1-1.1
Bone: minimum diameter0.71.21.80.2-1.3-1.3
Time in familiar zone, hab. session 11.01.01.10.9-1.1-1.1
Time in novel zone, hab. session 10.60.60.70.9-0.7-0.7
Total zone transitions, hab. session 10.10.10.2-0.40.30.3
Total locomotion distance, hab. session 10.10.10.2-0.40.20.2
Locomotion velocity, hab. session 10.81.21.6-1.21.01.0
Time in familiar zone, hab. session 20.10.10.20.0-0.4-0.4
Time in novel zone, hab. session 20.20.30.40.6-0.4-0.4
Total zone transitions, hab. session 20.20.30.3-0.50.50.5
Total locomotion distance, hab. session 20.50.60.8-0.60.90.9
Locomotion velocity, hab. session 20.81.11.3-0.81.21.2
Novel to familiar place preference ratio0.30.30.80.9-0.2-0.2
Novelty place preference0.60.61.41.2-0.5-0.5
Time in novel zone, NPP test0.80.91.71.3-0.7-0.7
Total zone transitions, NPP test1.72.52.5-1.51.61.6
Total locomotion distance, NPP test2.53.43.7-1.71.91.9
Locomotion velocity, NPP test4.26.06.5-2.22.52.5
Intraocular pressure4.05.86.72.6-2.3-2.3
Delta distance traveled before/after self-admin2.62.83.11.5-1.8-1.8
Delta ambulatory time before/after self-admin0.70.91.20.5-1.1-1.1
Parametrial fat weight10.725.125.45.0-5.0-5.0
Pavlov. Cond. lever latency1.21.62.41.5-1.1-1.1
Pavlov. Cond. magazine entry latency0.10.20.2-0.30.40.4
Pavlov. Cond. change in total contacts0.00.00.1-0.20.10.1
Pavlov. Cond. index score0.60.81.0-1.00.80.8
Pavlov. Cond. latency score0.50.61.0-1.00.70.7
Pavlov. Cond. lever contacts0.91.11.6-1.20.90.9
Pavlov. Cond. magazine entry number0.30.40.60.8-0.6-0.6
Pavlov. Cond. intertrial magazine entries0.70.81.7-1.30.60.6
Pavlov. Cond. lever-magazine prob. diff.1.41.82.0-1.41.31.3
Pavlov. Cond. response bias1.31.61.8-1.31.31.3
Pavlov. Cond. lever latency1.52.12.11.4-1.4-1.4
Pavlov. Cond. magazine entry latency0.00.00.1-0.4-0.0-0.0
Pavlov. Cond. change in total contacts1.22.02.4-1.01.51.5
Pavlov. Cond. index score0.91.31.4-1.21.11.1
Pavlov. Cond. latency score1.01.31.3-1.11.11.1
Pavlov. Cond. lever contacts1.21.61.7-1.21.31.3
Pavlov. Cond. magazine entry number0.00.00.10.4-0.0-0.0
Pavlov. Cond. intertrial magazine entries3.24.94.92.2-2.2-2.2
Pavlov. Cond. lever-magazine prob. diff.0.60.80.9-0.90.80.8
Pavlov. Cond. response bias1.52.02.4-1.51.41.4
Time in closed arm before self-admin1.72.22.61.2-1.6-1.6
Time in closed arm after self-admin2.42.63.01.3-1.7-1.7
Time in open arm before self-admin0.91.01.3-0.51.11.1
Time in open arm after self-admin1.41.52.0-1.41.11.1
Bone: periosteal estimation0.40.92.4-1.60.30.3
Bone: periosteal perimeter0.20.41.0-1.00.10.1
Bone: post-yield work0.30.51.2-1.10.40.4
Progressive ratio test 1 active lever presses0.80.91.2-1.10.90.9
Progressive ratio test 1 breakpoint0.91.11.3-1.11.01.0
Progressive ratio test 1 inactive lever presses2.84.04.7-1.62.22.2
Progressive ratio test 2 active lever presses0.00.00.0-0.1-0.2-0.2
Progressive ratio test 2 breakpoint0.00.00.10.0-0.2-0.2
Progressive ratio test 2 inactive lever presses0.20.40.6-0.80.50.5
Incentive Sensitization - Responses0.10.10.2-0.0-0.4-0.4
Incentive Sensitization - Breakpoint0.20.30.40.1-0.6-0.6
Sum of active levers in priming session hrs 5-60.70.60.9-0.90.70.7
Progressive ratio0.20.30.30.6-0.5-0.5
Food seeking constrained by brief footshock2.93.54.0-1.62.02.0
Seeking ratio, punishment vs. effort1.11.61.9-1.01.41.4
Retroperitoneal fat weight22.194.495.59.8-9.7-9.7
Reaction time number correct0.61.21.3-1.01.11.1
Reaction time mean minus median0.00.00.00.10.00.0
Reaction time mean minus median AUC0.00.00.10.30.00.0
Reaction time num false alarms0.10.10.1-0.30.30.3
Reaction time num false alarms AUC0.10.10.2-0.40.30.3
Reaction time trials correct on left0.61.21.3-1.01.11.1
Reaction time trials on left0.71.31.4-1.01.21.2
Reaction time mean1.21.92.01.3-1.4-1.4
Reaction time mean AUC1.01.61.71.2-1.3-1.3
Median of all reaction times1.62.32.51.4-1.6-1.6
Reaction time omissions0.00.00.1-0.30.20.2
Reaction time false alarm rate0.10.10.10.1-0.4-0.4
Reaction time premature initiation rate0.10.10.20.40.30.3
Reaction time premature initiations0.40.71.0-0.21.01.0
Std. dev. reaction times0.40.70.80.8-0.9-0.9
Reaction time trials completed0.71.31.4-1.01.21.2
Reaction time trials AUC0.71.41.4-1.11.21.2
Run reversals in cocaine runway, females0.60.60.90.10.90.9
Run reversals in cocaine runway, males1.81.82.7-0.41.61.6
Latency to leave start box in cocaine runway0.20.20.4-0.60.30.3
Latency to leave start box in cocaine runway, F0.20.20.4-0.60.30.3
Latency to leave start box in cocaine runway, M0.00.00.00.1-0.0-0.0
Std. dev. time between licks in bursts0.20.20.30.3-0.5-0.5
Total sessions with >9 infusions0.10.20.2-0.50.40.4
Short access day 1 total inactive lever presses8.110.611.9-2.83.43.4
Short access day 10 total inactive lever presses2.25.35.9-2.02.42.4
Short access day 1 total infusions1.82.32.4-1.61.51.5
Short access day 10 total infusions2.02.62.8-1.41.71.7
Short access total infusions0.30.40.5-0.70.60.6
Short access day 1 locomotion1.41.81.8-1.31.31.3
Short access day 10 total locomotion0.81.61.8-1.31.21.2
Short access total locomotion0.00.00.0-0.1-0.0-0.0
One hour access (0.3 mA shock)0.30.30.6-0.80.40.4
Compulsive drug intake0.30.40.50.50.70.7
One hour access (shock baseline)0.30.51.3-1.10.40.4
Social response proportion1.21.31.70.8-1.3-1.3
Social responses0.40.50.70.4-0.8-0.8
Social time1.11.61.71.2-1.3-1.3
Soleus weight5.115.015.9-4.03.83.8
Bone: stiffness0.20.30.4-0.2-0.7-0.7
Tibialis anterior weight2.99.813.8-3.72.82.8
Time to tail flick, vehicle, before self-admin0.91.01.61.3-0.8-0.8
Time to tail flick, vehicle, after self-admin3.14.14.92.2-1.9-1.9
Time to tail flick, test, before self-admin0.20.20.3-0.20.60.6
Time to tail flick, test, after self-admin0.10.10.2-0.3-0.4-0.4
Delta time to tail flick, vehicle, before/after SA0.50.50.70.2-0.8-0.8
Delta time to tail flick, test, before/after SA0.70.71.6-1.30.60.6
Tibia length3.710.211.32.9-3.4-3.4
Ambulatory time before self-admin0.20.30.4-0.20.60.6
Ambulatory time after self-admin0.91.11.41.2-1.0-1.0
Bone: tissue strength0.80.91.00.8-1.0-1.0
Total heroin consumption2.12.54.0-2.01.31.3
Bone: trabecular number2.94.86.4-2.52.02.0
Bone: trabecular spacing1.72.33.71.9-1.2-1.2
Bone: trabecular thickness0.20.30.9-0.9-0.1-0.1
Bone: trabecular tissue density0.20.30.4-0.60.50.5
Water consumed over 24 hours0.30.40.9-1.00.30.3
Number of responses in last shaping day0.00.00.00.10.20.2