Mrpl12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Mrpl12 0.05 0.03 5.6e-06 0.02 0.04 0.04 0.04 1.5e-03 1.1e-05 1.9e-05 5.4e-05
2 Adipose gene expression Mrpl12 0.33 0.15 2.0e-10 0.09 0.1 0.1 0.08 3.7e-10 2.5e-11 4.3e-11 1.8e-09
3 BLA gene expression Mrpl12 0.07 0.06 7.6e-03 0.04 0.03 0 0.03 2.4e-03 1.7e-02 2.1e-01 8.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.7-0.3-0.2-0.8
Area under the delay curve1.51.62.21.51.40.8
BMI with tail0.41.22.6-1.0-0.3-1.6
BMI without tail3.87.817.6-2.40.1-4.2
Body weight3.012.417.2-4.2-3.5-2.8
Weight adjusted by age2.42.74.2-1.9-2.0-0.6
Bone surface0.30.50.9-0.8-0.9-0.4
Bone volume0.20.40.4-0.6-0.6-0.6
Breakpoint value in progressive ratio session0.70.81.2-0.8-1.10.7
Number of licking bursts0.30.30.9-0.2-0.2-1.0
Context. condit. distance diff. score1.72.05.2-0.00.9-2.3
Locomotion velocity, session 12.22.45.41.20.62.3
Locomotion distance, session 12.63.35.02.22.20.0
Locomotion velocity, session 23.03.55.12.31.61.7
Locomotion distance, session 20.91.32.21.11.5-0.7
Locomotion velocity, session 31.21.42.51.20.51.6
Locomotion distance, session 32.12.33.71.91.41.1
Stereotopy head waving bouts, day 30.40.51.20.60.11.1
Stereotopy head waving duration, day 30.20.20.40.50.20.6
Locomotion velocity, session 70.40.51.01.00.70.1
Locomotion distance, session 73.44.46.92.42.6-0.5
Stereotopy head waving bouts, day 70.10.10.1-0.4-0.4-0.4
Stereotopy head waving duration, day 70.50.61.1-0.8-1.1-0.3
Locomotion velocity, session 81.61.93.21.11.8-1.1
Locomotion distance, session 82.94.38.50.81.9-2.9
Degree of sensitization distance0.80.82.2-0.40.4-1.5
Degree of sensitization stereotypy0.30.30.5-0.6-0.4-0.7
Conditioned locomotion2.93.45.5-1.9-0.9-2.3
Cocaine response after cond. corrected0.20.30.80.10.10.9
Cocaine response after cond. not corrected0.50.61.00.60.61.0
Cocaine response before conditioning0.50.61.21.10.9-0.1
Saline control response2.22.94.5-2.1-1.6-1.3
Bone: connectivity density0.30.51.20.30.5-1.1
Bone: cortical apparent density1.82.33.41.81.21.4
Bone: cortical area5.58.212.0-3.5-3.4-1.2
Bone: cortical porosity3.43.74.9-1.6-2.21.9
Bone: cortical porosity2.83.04.3-1.6-2.11.4
Bone: cortical thickness5.08.312.6-3.5-3.6-0.3
Bone: cortical thickness1.51.82.6-1.6-1.6-0.2
Bone: cortical tissue density2.12.73.92.01.31.5
Condit. Reinf. active minus inactive responses1.41.62.4-1.6-0.9-1.2
Condit. Reinf. active-inactive response ratio0.60.71.0-1.0-0.7-0.7
Condit. Reinf. active responses2.63.24.7-2.2-1.2-1.8
Condit. Reinf. inactive responses0.60.71.1-1.1-0.4-0.9
Incentive salience index mean1.31.62.0-1.4-0.9-1.3
Condit. Reinf. lever presses0.20.30.80.10.1-0.9
Condit. Reinf. active minus inactive responses0.50.60.9-1.0-0.3-0.9
Condit. Reinf. active-inactive response ratio1.51.63.1-1.8-1.3-0.4
Condit. Reinf. active responses0.30.40.7-0.20.6-0.8
Condit. Reinf. inactive responses0.81.01.91.11.4-0.2
Condit. Reinf. lever presses0.40.51.0-0.00.7-1.0
Condit. Reinf. lever reinforcers received0.40.61.0-0.10.8-1.0
Conditioned reinforcement - actives0.30.31.00.0-0.1-1.0
Conditioned reinforcement - inactives1.21.32.0-1.4-1.3-0.5
Conditioned locomotion0.40.40.8-0.4-0.9-0.6
Patch foraging indifference point 0 sec0.10.10.2-0.3-0.5-0.1
Patch foraging indifference point AUC0.20.20.40.20.6-0.5
Delay disc. indifference point, 0s delay0.00.00.00.2-0.20.1
Delay disc. indifference point, 16s delay2.42.53.91.82.0-0.3
Delay disc. indifference point, 2s delay0.30.30.50.60.30.7
Delay disc. indifference point, 24s delay3.53.34.62.11.32.0
Delay disc. indifference point, 4s delay0.40.40.50.60.70.6
Delay disc. indifference point, 8s delay0.70.71.20.80.61.1
Indifference point function ln k0.50.81.31.10.80.5
Indifference point function log k0.50.81.31.10.80.5
Patch foraging total patch changes 0 sec0.00.10.1-0.2-0.2-0.2
Patch foraging total patch changes 12 sec0.00.00.1-0.2-0.10.2
Patch foraging total patch changes 18 sec0.60.71.30.61.1-0.7
Patch foraging total patch changes 24 sec0.30.40.6-0.8-0.7-0.4
Patch foraging total patch changes 6 sec0.40.61.0-0.9-1.00.0
Patch foraging time to switch 0 sec0.30.50.70.70.40.8
Patch foraging water rate 0 sec1.42.23.6-1.6-0.7-1.9
Patch foraging water rate 12 sec0.60.91.90.00.9-1.4
Patch foraging water rate 18 sec0.81.13.2-0.40.1-1.8
Patch foraging water rate 24 sec1.72.36.1-0.80.4-2.5
Patch foraging water rate 6 sec0.30.41.0-0.00.4-1.0
Seeking ratio, delayed vs. immediate footshock1.11.21.7-1.3-0.9-1.1
Distance traveled before self-admin1.61.73.1-1.4-1.80.0
Distance traveled after self-admin0.40.41.1-0.50.1-1.0
Extensor digitorum longus weight0.51.94.30.41.2-2.1
Bone: elastic displacement1.41.62.4-1.5-1.60.0
Bone: elastic work7.29.313.9-3.7-3.70.4
Bone: endosteal estimation0.40.81.50.40.8-1.2
Bone: endosteal perimeter0.61.31.9-1.3-1.4-0.6
Epididymis fat weight0.92.03.4-1.3-1.0-1.9
Delta time in closed arm before/after self-admin0.10.10.10.1-0.3-0.2
Delta time in open arm before/after self-admin0.10.10.10.20.2-0.3
Diff in mean of infusions in LGA sessions0.10.10.20.4-0.30.4
Delay discount exponential model param2.02.12.7-1.7-1.5-1.1
Extinction: sum of active levers before priming0.80.81.31.00.11.1
Active lever presses in extinction session 61.01.02.30.1-0.91.5
Bone: final force4.26.710.7-3.3-2.7-1.4
Bone: final moment4.98.012.8-3.6-3.1-1.2
Food consumed during 24 hour testing period0.30.30.5-0.7-0.5-0.5
Glucose3.75.515.11.20.33.9
Heart weight0.20.20.5-0.7-0.3-0.3
Delay discount hyperbolic model param1.92.02.6-1.6-1.5-1.1
Intermittent access intake day 1-15 change0.50.51.0-1.0-0.6-0.5
Intermittent access intake escalation0.40.40.7-0.9-0.4-0.6
Intermittent access intake escalation 22.32.23.6-1.8-1.90.0
Intermitt. access day 1 inactive lever presses0.91.01.6-1.3-1.1-0.1
Intermitt. access day 15 inactive lever presses0.80.81.1-1.0-0.7-1.1
Intermitt. access escalation Index0.80.71.9-0.5-0.2-1.4
Intermittent access day 1 total infusions0.20.30.5-0.6-0.1-0.7
Intermittent access day 15 total infusions0.60.61.1-0.8-0.4-1.0
Intermittent access terminal intake (last 3 days)1.11.21.6-1.3-1.0-0.9
Intermittent access total infusions0.40.50.8-0.8-0.3-0.9
Intermittent access day 1 locomotion0.40.40.9-0.5-0.3-0.9
Intermittent access day 15 total locomotion0.50.60.8-0.9-0.9-0.4
Intermittent access total locomotion0.50.60.7-0.8-0.7-0.7
Intermittent access standard deviation0.90.92.1-0.0-0.81.4
Left kidney weight0.31.02.2-0.7-1.50.4
Right kidney weight0.10.20.6-0.2-0.8-0.1
Cocaine induced anxiety4.95.79.3-2.7-3.00.5
Post-drug Anxiety0.80.91.1-0.9-1.10.8
Baseline Anxiety6.16.59.83.13.00.9
Tail length3.610.914.9-3.9-2.1-3.7
Length with tail2.69.514.1-3.6-3.8-1.2
Length without tail2.04.46.7-0.6-2.62.5
Times rat made contact with spout1.92.13.1-1.6-1.80.9
Lifetime Intake0.20.20.4-0.4-0.2-0.6
Liver weight, left0.50.91.9-0.2-0.81.4
Liver weight, right2.23.76.0-2.1-2.4-0.8
Locomotor activity0.40.70.91.00.50.9
Locomotor testing distance0.50.81.61.30.70.5
Locomotor testing rearing0.30.40.70.80.70.0
Locomotion in novel chamber0.30.40.50.70.6-0.4
Locomotion in novel chamber post-restriction1.41.73.0-1.7-0.8-1.2
Fecal boli incidents, locomotor time 10.40.50.80.90.70.2
Change in fecal boli incidents, locomotor task1.71.63.90.90.42.0
Time >=10cm from walls, locomotor time 11.01.02.7-0.20.6-1.6
Bouts of movement, locomotor time 11.41.52.01.41.21.1
Total resting periods, locomotor time 11.61.82.01.41.11.4
Rest time, locomotor task time 10.30.41.00.1-0.21.0
Distance moved, locomotor task time 10.40.40.9-0.5-0.3-1.0
Vertical activity count, locomotor time 11.11.12.8-0.6-0.4-1.7
Time >=10cm from walls, locomotor time 20.10.10.2-0.1-0.1-0.5
Bouts of movement, locomotor time 21.31.42.31.31.50.3
Total resting periods, locomotor time 21.11.12.01.21.4-0.1
Rest time, locomotor task time 20.00.00.00.20.20.1
Distance moved, locomotor task time 20.00.00.0-0.1-0.2-0.2
Vertical activity count, locomotor time 20.40.41.20.10.3-1.1
Light reinforcement 11.22.25.6-0.9-0.5-2.4
Light reinforcement 21.92.63.4-1.5-1.4-1.8
Bone: marrow area0.40.81.40.40.8-1.2
Bone: maximum diameter1.63.04.4-1.9-2.1-0.9
Bone: maximum force3.86.610.8-3.3-2.5-1.7
Bone: maximum moment4.57.712.8-3.6-2.8-1.6
Mean time between licks in bursts1.11.62.71.61.30.5
Mean num. licks in bursts0.60.71.2-0.7-0.71.1
Cd content in liver1.92.13.21.71.80.4
Co content in liver0.10.10.20.40.10.1
Cu content in liver1.51.82.7-1.0-1.61.3
Fe content in liver0.70.81.51.20.90.3
K content in liver1.91.93.1-1.3-1.0-1.8
Mg content in liver1.41.43.90.10.6-2.0
Mn content in liver0.30.30.5-0.7-0.7-0.1
Na content in liver0.10.10.3-0.2-0.50.1
Rb content in liver0.81.02.7-0.70.2-1.6
Se content in liver0.20.30.4-0.5-0.3-0.6
Sr content in liver1.61.53.5-0.2-1.01.9
Zn content in liver0.10.10.3-0.2-0.50.3
Bone: minimum diameter3.05.78.5-2.8-2.9-0.9
Time in familiar zone, hab. session 10.20.20.40.00.30.6
Time in novel zone, hab. session 10.10.10.20.0-0.0-0.5
Total zone transitions, hab. session 10.50.71.30.91.1-0.1
Total locomotion distance, hab. session 10.20.30.90.10.3-0.9
Locomotion velocity, hab. session 10.20.31.00.10.2-1.0
Time in familiar zone, hab. session 20.40.40.60.70.8-0.2
Time in novel zone, hab. session 20.00.00.00.10.10.1
Total zone transitions, hab. session 21.82.43.71.11.9-1.5
Total locomotion distance, hab. session 21.52.05.00.10.9-2.2
Locomotion velocity, hab. session 21.41.95.3-0.20.6-2.3
Novel to familiar place preference ratio2.72.74.2-2.0-2.00.4
Novelty place preference2.72.74.1-2.0-2.00.5
Time in novel zone, NPP test2.02.03.2-1.8-1.70.3
Total zone transitions, NPP test2.33.24.71.52.2-1.7
Total locomotion distance, NPP test2.23.06.20.71.5-2.5
Locomotion velocity, NPP test1.42.04.80.41.0-2.2
Intraocular pressure0.30.40.8-0.70.3-0.9
Delta distance traveled before/after self-admin1.11.22.31.01.5-0.6
Delta ambulatory time before/after self-admin1.71.93.41.51.8-0.2
Parametrial fat weight1.32.63.8-1.9-1.7-1.0
Pavlov. Cond. lever latency2.63.25.81.72.4-1.1
Pavlov. Cond. magazine entry latency2.73.55.1-2.2-2.30.8
Pavlov. Cond. change in total contacts1.61.72.2-0.9-1.51.4
Pavlov. Cond. index score3.54.57.3-2.5-2.70.2
Pavlov. Cond. latency score3.44.47.5-2.3-2.70.5
Pavlov. Cond. lever contacts1.51.83.4-1.3-1.90.4
Pavlov. Cond. magazine entry number3.24.05.62.12.4-1.3
Pavlov. Cond. intertrial magazine entries0.60.71.9-0.10.5-1.4
Pavlov. Cond. lever-magazine prob. diff.3.64.57.3-2.5-2.70.2
Pavlov. Cond. response bias3.03.75.7-2.1-2.41.0
Pavlov. Cond. lever latency0.70.92.50.3-0.51.6
Pavlov. Cond. magazine entry latency2.42.84.61.92.1-0.4
Pavlov. Cond. change in total contacts0.81.11.90.91.4-0.8
Pavlov. Cond. index score0.81.01.80.81.3-0.8
Pavlov. Cond. latency score0.91.11.70.81.3-1.0
Pavlov. Cond. lever contacts1.01.43.7-0.40.5-1.9
Pavlov. Cond. magazine entry number1.82.23.7-1.7-1.90.5
Pavlov. Cond. intertrial magazine entries1.11.42.2-1.5-0.8-1.2
Pavlov. Cond. lever-magazine prob. diff.1.01.22.21.01.5-0.7
Pavlov. Cond. response bias0.71.01.60.31.1-1.3
Time in closed arm before self-admin0.30.30.90.10.11.0
Time in closed arm after self-admin1.11.13.20.2-0.41.8
Time in open arm before self-admin0.10.10.20.2-0.2-0.4
Time in open arm after self-admin0.20.30.30.50.5-0.5
Bone: periosteal estimation1.53.14.2-2.1-1.7-1.4
Bone: periosteal perimeter3.76.210.2-2.9-3.2-0.0
Bone: post-yield work0.40.60.80.40.8-0.9
Progressive ratio test 1 active lever presses0.91.01.3-1.1-0.7-1.2
Progressive ratio test 1 breakpoint1.11.21.6-1.2-0.8-1.2
Progressive ratio test 1 inactive lever presses2.02.12.9-1.6-1.1-1.7
Progressive ratio test 2 active lever presses0.30.40.6-0.8-0.5-0.5
Progressive ratio test 2 breakpoint0.40.50.8-0.7-0.4-0.9
Progressive ratio test 2 inactive lever presses0.40.40.7-0.8-0.8-0.3
Incentive Sensitization - Responses0.10.10.2-0.5-0.0-0.1
Incentive Sensitization - Breakpoint0.10.10.2-0.4-0.1-0.0
Sum of active levers in priming session hrs 5-60.40.40.6-0.8-0.40.7
Progressive ratio0.30.30.50.70.50.5
Food seeking constrained by brief footshock0.30.41.00.2-0.21.0
Seeking ratio, punishment vs. effort0.10.10.1-0.3-0.1-0.3
Retroperitoneal fat weight3.411.314.9-3.9-3.3-2.9
Reaction time number correct3.44.98.71.02.3-3.0
Reaction time mean minus median0.40.50.8-0.1-0.90.9
Reaction time mean minus median AUC0.20.20.6-0.3-0.80.1
Reaction time num false alarms0.20.30.40.60.50.5
Reaction time num false alarms AUC0.50.71.01.00.90.5
Reaction time trials correct on left3.44.98.71.02.3-3.0
Reaction time trials on left3.55.19.01.02.3-3.0
Reaction time mean0.20.30.6-0.4-0.4-0.8
Reaction time mean AUC0.40.51.5-0.3-0.2-1.2
Median of all reaction times0.30.41.2-0.3-0.0-1.1
Reaction time omissions0.20.20.5-0.2-0.4-0.7
Reaction time false alarm rate0.91.33.60.4-0.31.9
Reaction time premature initiation rate1.31.81.91.41.41.2
Reaction time premature initiations2.23.16.11.72.5-0.5
Std. dev. reaction times0.10.20.40.70.40.1
Reaction time trials completed3.55.19.01.02.3-3.0
Reaction time trials AUC3.45.09.11.02.2-3.0
Run reversals in cocaine runway, females1.51.52.91.21.7-0.2
Run reversals in cocaine runway, males2.02.03.4-1.5-1.80.4
Latency to leave start box in cocaine runway0.40.51.00.61.0-0.2
Latency to leave start box in cocaine runway, F0.90.91.20.81.1-1.0
Latency to leave start box in cocaine runway, M0.00.00.1-0.30.10.2
Std. dev. time between licks in bursts2.32.77.00.11.1-2.7
Total sessions with >9 infusions0.10.10.20.50.3-0.1
Short access day 1 total inactive lever presses0.40.41.10.30.4-1.0
Short access day 10 total inactive lever presses2.12.34.4-2.1-1.3-0.9
Short access day 1 total infusions0.80.91.61.30.60.8
Short access day 10 total infusions0.50.60.8-0.9-0.8-0.5
Short access total infusions0.00.00.1-0.0-0.0-0.2
Short access day 1 locomotion0.30.30.60.3-0.40.8
Short access day 10 total locomotion0.50.50.9-0.2-0.81.0
Short access total locomotion0.20.20.40.3-0.30.6
One hour access (0.3 mA shock)1.01.22.0-1.2-0.5-1.4
Compulsive drug intake0.30.30.8-0.5-0.2-0.9
One hour access (shock baseline)0.20.20.5-0.4-0.2-0.7
Social response proportion0.50.50.80.80.90.1
Social responses0.10.10.20.40.0-0.2
Social time0.10.10.20.40.4-0.2
Soleus weight1.02.94.0-2.0-1.6-1.6
Bone: stiffness0.50.81.1-1.0-0.7-1.0
Tibialis anterior weight0.10.51.10.10.5-1.1
Time to tail flick, vehicle, before self-admin0.10.10.2-0.2-0.0-0.4
Time to tail flick, vehicle, after self-admin1.41.52.41.51.10.8
Time to tail flick, test, before self-admin0.20.20.4-0.4-0.00.6
Time to tail flick, test, after self-admin0.20.20.40.3-0.30.7
Delta time to tail flick, vehicle, before/after SA0.40.40.60.70.8-0.2
Delta time to tail flick, test, before/after SA0.40.30.60.5-0.30.8
Tibia length7.721.835.4-5.9-5.4-0.8
Ambulatory time before self-admin2.52.64.3-1.9-2.1-0.3
Ambulatory time after self-admin0.20.20.5-0.4-0.2-0.7
Bone: tissue strength1.11.12.1-0.9-0.5-1.5
Total heroin consumption1.11.31.9-0.4-1.41.3
Bone: trabecular number0.00.00.0-0.1-0.0-0.2
Bone: trabecular spacing1.72.35.20.41.2-2.3
Bone: trabecular thickness1.72.02.5-1.2-1.61.5
Bone: trabecular tissue density0.60.81.31.10.90.6
Water consumed over 24 hours0.60.71.2-0.3-0.81.1
Number of responses in last shaping day1.11.11.8-1.0-1.3-0.8