Mrpl12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Mrpl12 0.36 0.16 2.8e-11 0.1 0.11 0.12 0.09 2.4e-11 1.3e-12 2.9e-13 1.7e-10
2 Liver gene expression Mrpl12 0.04 0.03 1.9e-05 0.02 0.04 0.04 0.03 3.6e-03 3.3e-05 8.3e-05 1.5e-04
3 BLA intron excision ratio chr10_106257047_106257531 0.06 0.05 9.3e-03 0.02 0.02 -0 0.01 2.5e-02 4.1e-02 4.8e-01 7.1e-02
4 BLA intron excision ratio chr10_106257717_106257946 0.06 0.05 7.6e-03 0.03 0.01 0 0.01 1.6e-02 5.0e-02 2.5e-01 5.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.7-0.2-0.30.8-0.8
Area under the delay curve1.41.62.41.61.5-1.01.0
BMI with tail0.31.21.7-0.9-0.81.3-1.3
BMI without tail1.75.16.2-1.7-2.32.5-2.5
Body weight1.87.812.5-3.4-3.51.9-1.9
Weight adjusted by age1.52.33.7-1.5-1.91.3-1.3
Bone surface0.20.30.7-0.8-0.70.0-0.0
Bone volume0.20.30.4-0.6-0.70.4-0.4
Breakpoint value in progressive ratio session0.50.61.2-0.9-1.1-0.30.3
Number of licking bursts0.20.30.5-0.1-0.10.7-0.7
Context. condit. distance diff. score2.22.74.90.90.22.2-2.2
Locomotion velocity, session 12.32.44.30.51.0-2.12.1
Locomotion distance, session 12.02.65.12.32.30.1-0.1
Locomotion velocity, session 22.83.24.51.62.1-1.71.7
Locomotion distance, session 20.81.11.91.41.10.8-0.8
Locomotion velocity, session 31.31.52.10.71.1-1.41.4
Locomotion distance, session 32.02.23.71.61.9-1.11.1
Stereotopy head waving bouts, day 30.60.81.40.10.4-1.21.2
Stereotopy head waving duration, day 30.20.30.30.30.6-0.50.5
Locomotion velocity, session 70.40.51.00.91.0-0.10.1
Locomotion distance, session 73.14.08.22.92.60.8-0.8
Stereotopy head waving bouts, day 70.10.20.3-0.5-0.60.2-0.2
Stereotopy head waving duration, day 70.30.30.7-0.8-0.70.2-0.2
Locomotion velocity, session 81.31.62.81.71.31.0-1.0
Locomotion distance, session 83.85.58.52.01.02.9-2.9
Degree of sensitization distance1.21.32.40.3-0.21.6-1.6
Degree of sensitization stereotypy0.20.30.4-0.3-0.50.6-0.6
Conditioned locomotion2.73.14.3-1.1-1.62.1-2.1
Cocaine response after cond. corrected0.40.50.9-0.10.0-1.01.0
Cocaine response after cond. not corrected0.60.71.30.40.6-1.11.1
Cocaine response before conditioning0.50.61.31.01.10.1-0.1
Saline control response1.72.33.1-1.5-1.81.4-1.4
Bone: connectivity density0.30.40.70.50.40.8-0.8
Bone: cortical apparent density1.72.33.71.51.9-1.31.3
Bone: cortical area3.75.710.9-3.2-3.30.9-0.9
Bone: cortical porosity3.13.33.8-1.9-1.6-1.91.9
Bone: cortical porosity2.62.94.0-2.0-1.8-1.41.4
Bone: cortical thickness3.66.012.2-3.5-3.40.3-0.3
Bone: cortical thickness0.91.12.4-1.5-1.40.1-0.1
Bone: cortical tissue density1.92.54.01.62.0-1.41.4
Condit. Reinf. active minus inactive responses1.41.62.2-1.0-1.51.2-1.2
Condit. Reinf. active-inactive response ratio0.60.70.9-0.7-0.90.8-0.8
Condit. Reinf. active responses2.53.14.3-1.5-2.11.7-1.7
Condit. Reinf. inactive responses0.50.61.0-0.6-1.00.8-0.8
Incentive salience index mean1.31.61.8-1.0-1.31.3-1.3
Condit. Reinf. lever presses0.30.40.80.30.20.9-0.9
Condit. Reinf. active minus inactive responses0.20.30.3-0.4-0.60.5-0.5
Condit. Reinf. active-inactive response ratio1.11.32.8-1.6-1.70.1-0.1
Condit. Reinf. active responses0.10.20.20.50.20.5-0.5
Condit. Reinf. inactive responses0.81.02.31.51.40.1-0.1
Condit. Reinf. lever presses0.50.71.20.70.11.1-1.1
Condit. Reinf. lever reinforcers received0.30.40.50.70.30.7-0.7
Conditioned reinforcement - actives0.00.10.10.10.30.2-0.2
Conditioned reinforcement - inactives0.50.81.5-1.2-0.80.7-0.7
Conditioned locomotion0.00.10.2-0.4-0.00.2-0.2
Patch foraging indifference point 0 sec0.00.10.1-0.3-0.30.2-0.2
Patch foraging indifference point AUC0.10.10.20.20.10.4-0.4
Delay disc. indifference point, 0s delay0.00.00.10.20.10.1-0.1
Delay disc. indifference point, 16s delay2.02.24.82.21.90.4-0.4
Delay disc. indifference point, 2s delay0.30.40.50.40.6-0.70.7
Delay disc. indifference point, 24s delay3.84.35.41.42.1-2.32.3
Delay disc. indifference point, 4s delay0.70.71.00.80.5-1.01.0
Delay disc. indifference point, 8s delay1.01.21.90.70.8-1.41.4
Indifference point function ln k0.40.71.41.21.2-0.30.3
Indifference point function log k0.40.71.41.21.2-0.30.3
Patch foraging total patch changes 0 sec0.00.10.1-0.1-0.20.4-0.4
Patch foraging total patch changes 12 sec0.10.20.2-0.3-0.4-0.50.5
Patch foraging total patch changes 18 sec0.71.11.41.20.61.1-1.1
Patch foraging total patch changes 24 sec0.50.91.1-0.9-0.91.1-1.1
Patch foraging total patch changes 6 sec0.40.61.3-1.1-1.0-0.10.1
Patch foraging time to switch 0 sec0.30.60.80.60.7-0.90.9
Patch foraging water rate 0 sec1.22.53.7-0.9-1.41.9-1.9
Patch foraging water rate 12 sec0.51.12.00.60.11.4-1.4
Patch foraging water rate 18 sec1.32.03.90.0-0.32.0-2.0
Patch foraging water rate 24 sec3.04.28.20.1-0.72.9-2.9
Patch foraging water rate 6 sec0.40.61.20.50.01.1-1.1
Seeking ratio, delayed vs. immediate footshock0.81.01.3-1.1-1.20.9-0.9
Distance traveled before self-admin0.60.81.8-1.1-1.30.2-0.2
Distance traveled after self-admin0.91.22.1-0.4-0.61.4-1.4
Extensor digitorum longus weight0.62.44.11.20.42.0-2.0
Bone: elastic displacement1.01.12.2-1.5-1.50.1-0.1
Bone: elastic work5.67.314.5-3.8-3.8-0.40.4
Bone: endosteal estimation0.30.60.91.00.50.8-0.8
Bone: endosteal perimeter0.40.91.7-1.3-1.30.2-0.2
Epididymis fat weight1.03.34.4-1.3-1.72.1-2.1
Delta time in closed arm before/after self-admin0.40.40.60.50.40.7-0.7
Delta time in open arm before/after self-admin0.10.10.10.20.20.2-0.2
Diff in mean of infusions in LGA sessions0.20.30.7-0.8-0.6-0.30.3
Delay discount exponential model param2.12.32.7-1.6-1.71.4-1.4
Extinction: sum of active levers before priming0.20.20.30.30.5-0.50.5
Active lever presses in extinction session 61.21.22.3-0.4-0.2-1.51.5
Bone: final force3.65.710.4-2.7-3.21.6-1.6
Bone: final moment4.16.612.8-3.1-3.61.4-1.4
Food consumed during 24 hour testing period0.20.30.5-0.5-0.70.4-0.4
Glucose8.413.325.00.71.6-5.05.0
Heart weight0.30.51.4-0.9-1.2-0.00.0
Delay discount hyperbolic model param1.92.22.3-1.5-1.51.4-1.4
Intermittent access intake day 1-15 change0.30.71.2-1.0-1.1-0.50.5
Intermittent access intake escalation0.30.61.0-1.0-1.0-0.40.4
Intermittent access intake escalation 21.21.33.1-1.4-1.8-0.40.4
Intermitt. access day 1 inactive lever presses0.62.43.6-0.6-1.41.9-1.9
Intermitt. access day 15 inactive lever presses1.02.03.8-0.3-0.62.0-2.0
Intermitt. access escalation Index0.40.61.1-0.2-0.31.1-1.1
Intermittent access day 1 total infusions0.10.10.4-0.7-0.20.2-0.2
Intermittent access day 15 total infusions0.40.61.4-1.2-0.80.2-0.2
Intermittent access terminal intake (last 3 days)0.70.92.1-1.4-1.10.3-0.3
Intermittent access total infusions0.30.41.1-1.1-0.50.2-0.2
Intermittent access day 1 locomotion0.10.10.3-0.5-0.10.1-0.1
Intermittent access day 15 total locomotion0.40.82.2-1.5-0.9-0.20.2
Intermittent access total locomotion0.40.41.4-1.2-0.60.1-0.1
Intermittent access standard deviation0.61.22.5-0.2-0.1-1.61.6
Left kidney weight0.21.11.4-1.2-0.7-1.11.1
Right kidney weight0.20.71.1-1.1-0.5-0.90.9
Cocaine induced anxiety2.02.85.7-2.4-1.8-1.11.1
Post-drug Anxiety2.22.43.6-1.3-0.7-1.91.9
Baseline Anxiety1.51.82.31.51.5-1.21.2
Tail length2.39.015.2-3.4-3.92.2-2.2
Length with tail1.67.114.6-3.8-3.70.2-0.2
Length without tail1.13.56.7-2.6-1.8-1.51.5
Times rat made contact with spout1.51.72.9-1.7-1.6-0.90.9
Lifetime Intake0.20.20.8-0.9-0.10.0-0.0
Liver weight, left0.61.01.8-0.00.5-1.31.3
Liver weight, right2.03.65.0-2.2-2.21.5-1.5
Locomotor activity0.50.81.21.11.0-0.70.7
Locomotor testing distance0.81.53.31.81.6-0.00.0
Locomotor testing rearing0.40.81.61.31.10.4-0.4
Locomotion in novel chamber0.30.40.50.40.70.7-0.7
Locomotion in novel chamber post-restriction1.62.74.4-1.9-2.11.1-1.1
Fecal boli incidents, locomotor time 10.10.20.60.50.7-0.10.1
Change in fecal boli incidents, locomotor task2.02.03.80.40.6-1.91.9
Time >=10cm from walls, locomotor time 10.60.71.30.1-0.21.1-1.1
Bouts of movement, locomotor time 11.11.31.61.01.3-1.11.1
Total resting periods, locomotor time 11.61.82.21.01.3-1.51.5
Rest time, locomotor task time 10.81.01.9-0.10.1-1.41.4
Distance moved, locomotor task time 10.30.40.8-0.1-0.50.9-0.9
Vertical activity count, locomotor time 10.61.52.8-0.4-0.61.7-1.7
Time >=10cm from walls, locomotor time 20.00.10.1-0.3-0.3-0.20.2
Bouts of movement, locomotor time 20.40.71.50.61.2-0.60.6
Total resting periods, locomotor time 20.20.41.20.51.1-0.20.2
Rest time, locomotor task time 20.10.20.3-0.40.1-0.50.5
Distance moved, locomotor task time 20.10.10.20.4-0.00.4-0.4
Vertical activity count, locomotor time 20.40.61.00.50.21.0-1.0
Light reinforcement 11.23.05.9-0.3-0.62.4-2.4
Light reinforcement 21.92.93.9-1.3-1.42.0-2.0
Bone: marrow area0.30.71.01.00.60.8-0.8
Bone: maximum diameter1.01.93.7-1.9-1.90.4-0.4
Bone: maximum force3.15.510.1-2.5-3.21.7-1.7
Bone: maximum moment3.56.112.1-2.8-3.51.4-1.4
Mean time between licks in bursts0.51.22.31.41.5-0.60.6
Mean num. licks in bursts0.40.60.7-0.8-0.8-0.80.8
Cd content in liver1.31.53.11.81.20.8-0.8
Co content in liver0.10.10.2-0.4-0.3-0.20.2
Cu content in liver1.41.72.8-1.7-1.5-0.90.9
Fe content in liver0.40.50.91.00.90.1-0.1
K content in liver2.02.03.5-0.6-0.71.9-1.9
Mg content in liver2.32.34.40.60.32.1-2.1
Mn content in liver0.10.10.2-0.4-0.30.2-0.2
Na content in liver0.30.40.70.00.30.8-0.8
Rb content in liver1.61.83.3-0.2-0.81.8-1.8
Se content in liver0.30.40.6-0.3-0.40.8-0.8
Sr content in liver1.51.32.5-0.5-0.1-1.61.6
Zn content in liver1.11.21.4-1.0-1.21.1-1.1
Bone: minimum diameter2.24.08.0-2.8-2.80.5-0.5
Time in familiar zone, hab. session 10.20.20.40.0-0.0-0.60.6
Time in novel zone, hab. session 10.20.20.40.20.10.6-0.6
Total zone transitions, hab. session 10.50.61.51.20.90.3-0.3
Total locomotion distance, hab. session 10.40.61.10.50.21.0-1.0
Locomotion velocity, hab. session 10.50.71.30.40.21.2-1.2
Time in familiar zone, hab. session 20.40.40.80.90.80.2-0.2
Time in novel zone, hab. session 20.00.00.0-0.00.0-0.10.1
Total zone transitions, hab. session 21.92.43.11.81.21.6-1.6
Total locomotion distance, hab. session 22.12.85.10.90.32.3-2.3
Locomotion velocity, hab. session 22.12.85.40.60.02.3-2.3
Novel to familiar place preference ratio2.12.34.4-2.1-2.1-0.40.4
Novelty place preference2.12.34.3-2.1-2.1-0.50.5
Time in novel zone, NPP test1.51.73.3-1.8-1.8-0.30.3
Total zone transitions, NPP test2.63.74.32.11.52.0-2.0
Total locomotion distance, NPP test3.14.26.91.50.92.6-2.6
Locomotion velocity, NPP test2.23.05.41.10.52.3-2.3
Intraocular pressure0.20.30.50.0-0.70.6-0.6
Delta distance traveled before/after self-admin0.60.60.70.70.80.8-0.8
Delta ambulatory time before/after self-admin0.81.02.11.31.50.4-0.4
Parametrial fat weight0.40.91.0-0.9-0.91.0-1.0
Pavlov. Cond. lever latency2.22.85.72.41.81.0-1.0
Pavlov. Cond. magazine entry latency2.12.75.2-2.3-2.2-0.60.6
Pavlov. Cond. change in total contacts1.71.82.1-1.4-1.0-1.51.5
Pavlov. Cond. index score2.73.47.3-2.7-2.5-0.10.1
Pavlov. Cond. latency score2.73.47.4-2.7-2.4-0.50.5
Pavlov. Cond. lever contacts1.11.43.1-1.8-1.4-0.40.4
Pavlov. Cond. magazine entry number3.13.96.72.62.41.3-1.3
Pavlov. Cond. intertrial magazine entries0.81.01.90.40.01.4-1.4
Pavlov. Cond. lever-magazine prob. diff.2.63.26.8-2.6-2.4-0.20.2
Pavlov. Cond. response bias2.43.05.6-2.4-2.1-1.01.0
Pavlov. Cond. lever latency1.41.83.5-0.50.3-1.91.9
Pavlov. Cond. magazine entry latency2.22.76.12.51.90.6-0.6
Pavlov. Cond. change in total contacts0.91.42.61.61.01.0-1.0
Pavlov. Cond. index score0.91.22.31.50.81.0-1.0
Pavlov. Cond. latency score1.01.42.31.50.91.1-1.1
Pavlov. Cond. lever contacts1.31.73.30.7-0.11.8-1.8
Pavlov. Cond. magazine entry number1.62.04.5-2.1-1.6-0.60.6
Pavlov. Cond. intertrial magazine entries0.81.31.7-1.2-1.31.0-1.0
Pavlov. Cond. lever-magazine prob. diff.1.01.32.81.71.00.8-0.8
Pavlov. Cond. response bias0.91.31.81.40.61.2-1.2
Time in closed arm before self-admin1.01.32.6-0.30.2-1.61.6
Time in closed arm after self-admin1.51.63.1-0.10.4-1.81.8
Time in open arm before self-admin0.60.61.20.30.01.1-1.1
Time in open arm after self-admin0.60.61.00.70.31.0-1.0
Bone: periosteal estimation0.91.93.4-1.6-1.90.9-0.9
Bone: periosteal perimeter2.95.09.8-3.1-3.1-0.50.5
Bone: post-yield work0.20.30.60.80.40.5-0.5
Progressive ratio test 1 active lever presses0.30.30.7-0.9-0.50.3-0.3
Progressive ratio test 1 breakpoint0.30.40.9-1.0-0.60.3-0.3
Progressive ratio test 1 inactive lever presses2.33.45.1-1.0-1.52.3-2.3
Progressive ratio test 2 active lever presses0.20.20.8-0.9-0.4-0.00.0
Progressive ratio test 2 breakpoint0.20.20.8-0.9-0.4-0.00.0
Progressive ratio test 2 inactive lever presses0.30.51.5-1.2-0.70.0-0.0
Incentive Sensitization - Responses0.10.10.4-0.7-0.40.1-0.1
Incentive Sensitization - Breakpoint0.10.10.4-0.6-0.3-0.00.0
Sum of active levers in priming session hrs 5-60.20.10.6-0.1-0.8-0.00.0
Progressive ratio0.40.61.11.01.0-0.40.4
Food seeking constrained by brief footshock0.60.81.5-0.3-0.0-1.21.2
Seeking ratio, punishment vs. effort0.00.00.1-0.3-0.30.1-0.1
Retroperitoneal fat weight2.29.39.8-2.8-3.13.1-3.1
Reaction time number correct4.48.413.32.31.23.6-3.6
Reaction time mean minus median0.20.60.8-0.8-0.1-0.90.9
Reaction time mean minus median AUC0.00.10.4-0.6-0.2-0.10.1
Reaction time num false alarms0.20.20.30.50.5-0.50.5
Reaction time num false alarms AUC0.30.40.80.80.9-0.30.3
Reaction time trials correct on left4.48.413.32.31.23.6-3.6
Reaction time trials on left4.68.613.82.31.23.7-3.7
Reaction time mean0.20.30.4-0.3-0.40.6-0.6
Reaction time mean AUC0.30.51.0-0.0-0.11.0-1.0
Median of all reaction times0.40.51.0-0.0-0.31.0-1.0
Reaction time omissions0.30.50.9-0.2-0.31.0-1.0
Reaction time false alarm rate1.72.34.6-0.40.2-2.12.1
Reaction time premature initiation rate1.31.82.01.11.4-1.41.4
Reaction time premature initiations1.32.34.72.21.90.7-0.7
Std. dev. reaction times0.10.20.40.50.7-0.10.1
Reaction time trials completed4.68.613.82.31.23.7-3.7
Reaction time trials AUC4.68.814.22.31.23.8-3.8
Run reversals in cocaine runway, females1.01.02.11.41.40.1-0.1
Run reversals in cocaine runway, males1.41.42.9-1.7-1.7-0.10.1
Latency to leave start box in cocaine runway0.30.30.60.80.80.1-0.1
Latency to leave start box in cocaine runway, F1.11.21.41.21.11.1-1.1
Latency to leave start box in cocaine runway, M0.40.40.7-0.2-0.1-0.80.8
Std. dev. time between licks in bursts2.73.66.31.30.52.5-2.5
Total sessions with >9 infusions0.10.10.3-0.20.5-0.00.0
Short access day 1 total inactive lever presses0.10.10.2-0.20.20.4-0.4
Short access day 10 total inactive lever presses1.22.83.6-1.0-1.71.9-1.9
Short access day 1 total infusions0.60.82.00.71.4-0.60.6
Short access day 10 total infusions0.81.02.4-1.6-1.30.2-0.2
Short access total infusions0.10.10.6-0.80.1-0.00.0
Short access day 1 locomotion0.20.30.5-0.20.2-0.70.7
Short access day 10 total locomotion0.50.91.4-0.8-0.4-1.21.2
Short access total locomotion0.60.71.0-1.0-0.4-0.90.9
One hour access (0.3 mA shock)0.10.20.4-0.6-0.30.3-0.3
Compulsive drug intake1.31.53.00.3-0.31.7-1.7
One hour access (shock baseline)0.10.20.7-0.9-0.1-0.30.3
Social response proportion0.30.40.70.80.80.3-0.3
Social responses0.20.20.30.20.40.5-0.5
Social time0.10.20.30.60.40.3-0.3
Soleus weight0.92.64.2-1.6-2.11.3-1.3
Bone: stiffness0.30.60.7-0.5-0.80.8-0.8
Tibialis anterior weight0.10.30.50.40.20.7-0.7
Time to tail flick, vehicle, before self-admin0.10.10.20.20.4-0.30.3
Time to tail flick, vehicle, after self-admin0.81.02.00.61.4-1.01.0
Time to tail flick, test, before self-admin0.10.10.2-0.10.2-0.50.5
Time to tail flick, test, after self-admin0.80.81.3-0.50.5-1.21.2
Delta time to tail flick, vehicle, before/after SA0.20.20.30.10.30.5-0.5
Delta time to tail flick, test, before/after SA0.60.61.2-0.10.2-1.11.1
Tibia length6.317.335.8-5.7-6.00.8-0.8
Ambulatory time before self-admin1.21.83.8-1.5-1.90.8-0.8
Ambulatory time after self-admin0.70.81.5-0.3-0.51.2-1.2
Bone: tissue strength1.51.62.0-0.8-1.31.4-1.4
Total heroin consumption0.40.51.4-1.2-0.5-0.40.4
Bone: trabecular number0.00.00.1-0.3-0.2-0.00.0
Bone: trabecular spacing2.63.56.01.30.62.4-2.4
Bone: trabecular thickness2.02.53.1-1.8-1.5-1.51.5
Bone: trabecular tissue density0.50.81.51.21.2-0.40.4
Water consumed over 24 hours0.71.01.5-0.8-0.4-1.21.2
Number of responses in last shaping day0.10.10.2-0.0-0.00.5-0.5