Mkrn2os

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Mkrn2os 0.09 0.05 2.4e-07 0.06 0.06 0.06 0.07 7.0e-07 5.6e-07 8.3e-07 7.4e-08
2 Adipose gene expression Mkrn2os 0.02 0.01 7.8e-03 0 0.01 0.01 0.01 1.3e-01 6.4e-02 3.8e-02 5.0e-02
3 Adipose isoform ratio XM_008763263.3 0.02 0.01 3.9e-03 0.01 0.02 0.01 0.01 9.2e-03 6.4e-03 4.6e-02 1.3e-02
4 Adipose isoform ratio XM_039108781.2 0.02 0.01 6.0e-03 0.01 0.01 0.01 0.01 1.0e-02 8.6e-03 7.0e-02 1.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.6-0.8-0.1-0.30.3
Area under the delay curve0.10.10.20.30.4-0.00.0
BMI with tail0.93.13.92.01.11.9-1.9
BMI without tail0.10.40.80.40.30.9-0.9
Body weight0.21.02.11.40.21.0-1.0
Weight adjusted by age0.20.20.50.20.70.5-0.5
Bone surface0.20.41.2-1.1-0.2-0.50.5
Bone volume0.20.40.6-0.8-0.3-0.60.6
Breakpoint value in progressive ratio session0.30.40.70.8-0.2-0.60.6
Number of licking bursts0.40.61.4-1.2-0.7-0.50.5
Context. condit. distance diff. score1.41.72.41.61.41.1-1.1
Locomotion velocity, session 10.30.40.5-0.5-0.7-0.60.6
Locomotion distance, session 11.31.62.8-1.4-1.7-0.90.9
Locomotion velocity, session 20.81.02.0-1.4-0.7-0.80.8
Locomotion distance, session 22.83.94.9-2.2-2.2-1.81.7
Locomotion velocity, session 30.30.30.4-0.60.40.6-0.6
Locomotion distance, session 30.40.50.6-0.80.50.7-0.7
Stereotopy head waving bouts, day 30.91.11.6-0.8-0.8-1.21.3
Stereotopy head waving duration, day 31.51.82.6-0.8-1.3-1.61.6
Locomotion velocity, session 70.10.10.5-0.70.20.1-0.1
Locomotion distance, session 70.10.20.30.20.30.5-0.5
Stereotopy head waving bouts, day 70.70.82.3-1.5-0.3-0.60.6
Stereotopy head waving duration, day 71.21.53.1-1.8-0.7-1.11.1
Locomotion velocity, session 80.30.40.6-0.8-0.5-0.60.6
Locomotion distance, session 80.10.20.4-0.2-0.6-0.30.3
Degree of sensitization distance0.50.50.60.6-0.7-0.70.8
Degree of sensitization stereotypy0.20.20.6-0.80.20.0-0.0
Conditioned locomotion2.63.04.10.91.72.0-2.0
Cocaine response after cond. corrected4.75.77.7-2.8-2.1-2.32.3
Cocaine response after cond. not corrected5.26.18.5-2.9-2.2-2.42.4
Cocaine response before conditioning0.00.00.00.20.1-0.10.1
Saline control response0.81.12.1-0.41.41.0-1.1
Bone: connectivity density0.50.81.1-1.0-0.9-0.90.8
Bone: cortical apparent density0.30.30.4-0.5-0.6-0.60.6
Bone: cortical area0.00.10.1-0.10.4-0.30.3
Bone: cortical porosity0.60.71.0-0.4-0.9-1.01.0
Bone: cortical porosity0.40.40.60.1-0.6-0.80.8
Bone: cortical thickness0.30.50.7-0.6-0.3-0.80.8
Bone: cortical thickness0.10.10.2-0.30.40.1-0.0
Bone: cortical tissue density0.30.40.4-0.5-0.6-0.60.6
Condit. Reinf. active minus inactive responses0.60.61.5-1.2-0.6-0.60.6
Condit. Reinf. active-inactive response ratio0.91.02.2-1.5-0.9-0.70.7
Condit. Reinf. active responses0.10.10.1-0.30.20.3-0.3
Condit. Reinf. inactive responses0.81.01.10.81.11.0-1.0
Incentive salience index mean1.41.82.7-1.6-1.3-1.11.1
Condit. Reinf. lever presses1.72.43.2-1.4-1.8-1.51.5
Condit. Reinf. active minus inactive responses1.01.41.9-1.4-0.9-1.21.2
Condit. Reinf. active-inactive response ratio2.73.14.2-1.1-1.7-2.02.0
Condit. Reinf. active responses0.20.20.8-0.90.1-0.20.2
Condit. Reinf. inactive responses2.22.83.90.22.01.9-1.9
Condit. Reinf. lever presses0.30.40.7-0.8-0.2-0.60.6
Condit. Reinf. lever reinforcers received0.40.51.5-1.2-0.0-0.50.5
Conditioned reinforcement - actives2.64.56.02.41.92.1-2.1
Conditioned reinforcement - inactives0.10.10.20.30.5-0.10.1
Conditioned locomotion0.20.20.40.60.70.2-0.2
Patch foraging indifference point 0 sec0.40.81.30.50.51.1-1.2
Patch foraging indifference point AUC0.20.30.6-0.8-0.5-0.40.4
Delay disc. indifference point, 0s delay1.51.62.31.31.51.2-1.2
Delay disc. indifference point, 16s delay0.00.00.0-0.1-0.0-0.20.2
Delay disc. indifference point, 2s delay0.80.91.81.41.20.5-0.5
Delay disc. indifference point, 24s delay0.40.51.2-1.1-0.7-0.30.2
Delay disc. indifference point, 4s delay0.40.40.80.70.90.4-0.4
Delay disc. indifference point, 8s delay0.10.20.3-0.3-0.2-0.50.5
Indifference point function ln k0.10.20.90.90.1-0.20.2
Indifference point function log k0.10.20.90.90.1-0.20.2
Patch foraging total patch changes 0 sec0.40.71.10.70.31.0-1.0
Patch foraging total patch changes 12 sec0.10.20.3-0.6-0.60.0-0.0
Patch foraging total patch changes 18 sec0.10.20.4-0.4-0.20.6-0.6
Patch foraging total patch changes 24 sec1.11.92.70.81.21.6-1.6
Patch foraging total patch changes 6 sec0.30.50.70.80.60.7-0.7
Patch foraging time to switch 0 sec0.20.50.70.60.80.7-0.7
Patch foraging water rate 0 sec0.40.82.3-0.4-1.5-0.60.6
Patch foraging water rate 12 sec0.20.40.7-0.0-0.8-0.60.6
Patch foraging water rate 18 sec0.20.31.01.00.20.3-0.3
Patch foraging water rate 24 sec0.60.81.9-0.2-1.4-0.80.8
Patch foraging water rate 6 sec0.91.42.8-1.0-1.7-0.90.9
Seeking ratio, delayed vs. immediate footshock1.01.23.01.70.70.8-0.8
Distance traveled before self-admin0.40.60.9-1.0-0.5-0.70.7
Distance traveled after self-admin0.10.10.20.10.40.3-0.3
Extensor digitorum longus weight2.610.227.75.32.22.1-2.0
Bone: elastic displacement1.11.32.00.81.41.1-1.1
Bone: elastic work0.10.10.20.50.40.0-0.0
Bone: endosteal estimation0.30.60.90.71.00.7-0.7
Bone: endosteal perimeter0.30.61.20.51.10.6-0.7
Epididymis fat weight0.51.82.60.71.61.4-1.4
Delta time in closed arm before/after self-admin0.40.40.6-0.3-0.4-0.80.8
Delta time in open arm before/after self-admin0.00.00.10.3-0.10.1-0.1
Diff in mean of infusions in LGA sessions0.30.30.50.40.30.7-0.7
Delay discount exponential model param0.00.00.1-0.2-0.30.1-0.0
Extinction: sum of active levers before priming0.10.10.20.30.50.4-0.4
Active lever presses in extinction session 60.10.10.30.6-0.0-0.00.0
Bone: final force0.10.10.30.50.20.1-0.1
Bone: final moment0.10.20.40.60.50.4-0.4
Food consumed during 24 hour testing period0.20.20.50.20.70.4-0.4
Glucose0.81.33.31.80.60.9-0.9
Heart weight0.30.40.50.70.70.6-0.6
Delay discount hyperbolic model param0.10.10.3-0.5-0.6-0.10.1
Intermittent access intake day 1-15 change0.20.51.11.00.90.1-0.1
Intermittent access intake escalation0.30.71.51.21.10.3-0.3
Intermittent access intake escalation 20.60.71.71.30.6-0.70.7
Intermitt. access day 1 inactive lever presses0.41.72.7-1.6-0.5-1.41.4
Intermitt. access day 15 inactive lever presses0.30.61.3-1.10.5-0.70.6
Intermitt. access escalation Index0.50.62.0-0.6-1.4-0.40.4
Intermittent access day 1 total infusions0.50.81.10.90.61.0-1.0
Intermittent access day 15 total infusions3.45.16.92.62.12.1-2.1
Intermittent access terminal intake (last 3 days)3.85.08.22.92.02.0-2.0
Intermittent access total infusions4.35.06.32.51.92.3-2.2
Intermittent access day 1 locomotion0.81.02.21.51.00.7-0.7
Intermittent access day 15 total locomotion1.42.64.12.01.71.3-1.2
Intermittent access total locomotion2.42.85.22.31.41.4-1.4
Intermittent access standard deviation0.20.51.20.71.10.3-0.3
Left kidney weight1.15.06.1-2.0-2.5-2.22.2
Right kidney weight1.15.06.1-2.5-2.3-2.12.1
Cocaine induced anxiety0.40.61.3-1.1-0.40.6-0.7
Post-drug Anxiety1.51.65.1-2.3-0.8-0.50.5
Baseline Anxiety0.30.30.4-0.50.6-0.60.6
Tail length0.20.91.2-1.1-1.0-0.90.8
Length with tail0.00.10.30.0-0.6-0.30.3
Length without tail0.31.11.71.30.71.0-1.0
Times rat made contact with spout0.30.40.6-0.7-0.6-0.50.5
Lifetime Intake3.13.84.72.21.62.0-2.0
Liver weight, left0.50.91.7-0.3-1.3-0.90.9
Liver weight, right1.01.72.7-0.9-1.6-1.31.3
Locomotor activity0.50.72.2-1.5-0.8-0.30.2
Locomotor testing distance0.50.92.0-1.4-1.0-0.60.5
Locomotor testing rearing0.81.62.1-0.81.41.4-1.4
Locomotion in novel chamber1.01.32.9-0.5-1.7-1.01.0
Locomotion in novel chamber post-restriction6.310.414.0-1.7-3.7-3.53.5
Fecal boli incidents, locomotor time 10.50.71.2-1.1-1.0-0.50.5
Change in fecal boli incidents, locomotor task0.30.30.40.60.20.6-0.6
Time >=10cm from walls, locomotor time 11.81.93.8-2.0-1.2-1.11.1
Bouts of movement, locomotor time 10.40.40.60.50.60.7-0.8
Total resting periods, locomotor time 10.70.80.90.90.90.9-0.9
Rest time, locomotor task time 10.81.03.01.70.20.7-0.6
Distance moved, locomotor task time 10.91.43.9-2.0-0.0-0.90.9
Vertical activity count, locomotor time 10.10.20.6-0.80.4-0.00.0
Time >=10cm from walls, locomotor time 20.50.81.8-1.4-0.9-0.40.4
Bouts of movement, locomotor time 20.10.20.8-0.90.0-0.30.2
Total resting periods, locomotor time 20.20.41.2-1.1-0.2-0.40.3
Rest time, locomotor task time 20.20.20.50.70.30.3-0.3
Distance moved, locomotor task time 20.50.61.1-1.1-0.2-0.80.8
Vertical activity count, locomotor time 20.40.61.0-0.4-0.4-1.01.0
Light reinforcement 10.10.20.3-0.6-0.5-0.40.4
Light reinforcement 20.00.00.1-0.1-0.30.1-0.1
Bone: marrow area0.30.60.90.60.90.7-0.7
Bone: maximum diameter0.10.30.4-0.50.2-0.60.6
Bone: maximum force0.30.51.11.10.70.4-0.4
Bone: maximum moment0.40.71.21.10.90.6-0.6
Mean time between licks in bursts0.00.00.10.00.0-0.30.3
Mean num. licks in bursts0.00.00.20.4-0.0-0.00.0
Cd content in liver0.10.10.2-0.0-0.5-0.20.3
Co content in liver0.10.10.20.40.40.00.0
Cu content in liver0.91.11.31.11.01.0-1.1
Fe content in liver0.91.03.11.80.60.6-0.6
K content in liver1.21.11.6-1.1-0.5-1.31.2
Mg content in liver0.10.10.4-0.10.7-0.10.1
Mn content in liver0.10.10.4-0.60.2-0.20.2
Na content in liver0.20.20.3-0.30.60.4-0.4
Rb content in liver0.20.20.5-0.10.70.3-0.3
Se content in liver0.50.52.21.50.10.1-0.1
Sr content in liver0.80.70.8-0.9-0.8-0.90.8
Zn content in liver0.40.50.8-0.2-0.4-0.90.9
Bone: minimum diameter0.71.33.11.81.30.6-0.6
Time in familiar zone, hab. session 10.10.10.3-0.6-0.20.1-0.2
Time in novel zone, hab. session 10.10.10.10.4-0.3-0.20.2
Total zone transitions, hab. session 10.40.51.2-1.1-0.20.7-0.7
Total locomotion distance, hab. session 10.50.81.4-0.20.41.2-1.2
Locomotion velocity, hab. session 10.30.40.7-0.30.30.8-0.8
Time in familiar zone, hab. session 20.10.10.10.00.20.3-0.4
Time in novel zone, hab. session 20.30.30.4-0.2-0.5-0.60.6
Total zone transitions, hab. session 21.31.73.7-1.9-1.4-0.70.7
Total locomotion distance, hab. session 21.41.84.2-2.1-1.5-0.70.6
Locomotion velocity, hab. session 21.11.53.6-1.9-1.3-0.60.5
Novel to familiar place preference ratio0.10.10.30.50.2-0.10.1
Novelty place preference0.10.10.30.50.0-0.20.3
Time in novel zone, NPP test0.20.20.60.80.30.1-0.1
Total zone transitions, NPP test1.92.74.3-1.8-2.1-1.31.3
Total locomotion distance, NPP test0.40.61.5-0.7-1.2-0.50.5
Locomotion velocity, NPP test0.91.32.3-1.1-1.5-0.90.9
Intraocular pressure0.10.10.2-0.1-0.5-0.40.4
Delta distance traveled before/after self-admin4.95.26.22.02.12.5-2.5
Delta ambulatory time before/after self-admin2.12.63.01.51.51.7-1.7
Parametrial fat weight0.10.30.4-0.4-0.5-0.60.6
Pavlov. Cond. lever latency0.00.10.10.20.20.2-0.2
Pavlov. Cond. magazine entry latency2.32.93.1-1.7-1.6-1.71.7
Pavlov. Cond. change in total contacts0.70.71.3-0.6-1.2-0.80.8
Pavlov. Cond. index score0.50.60.6-0.8-0.7-0.80.8
Pavlov. Cond. latency score0.60.80.8-0.8-0.9-0.90.9
Pavlov. Cond. lever contacts0.10.20.3-0.2-0.5-0.40.4
Pavlov. Cond. magazine entry number1.41.71.91.31.21.4-1.4
Pavlov. Cond. intertrial magazine entries2.12.64.20.92.01.6-1.6
Pavlov. Cond. lever-magazine prob. diff.0.70.90.9-0.9-1.0-1.01.0
Pavlov. Cond. response bias1.51.82.0-1.3-1.3-1.41.4
Pavlov. Cond. lever latency0.20.30.40.50.20.6-0.7
Pavlov. Cond. magazine entry latency1.31.52.2-0.9-0.9-1.51.5
Pavlov. Cond. change in total contacts2.13.44.2-1.7-1.5-2.02.0
Pavlov. Cond. index score1.01.31.8-0.9-0.9-1.31.4
Pavlov. Cond. latency score1.51.92.7-1.0-1.1-1.61.7
Pavlov. Cond. lever contacts0.30.40.6-0.6-0.3-0.80.8
Pavlov. Cond. magazine entry number2.73.34.21.61.52.1-2.0
Pavlov. Cond. intertrial magazine entries0.20.30.60.10.40.8-0.8
Pavlov. Cond. lever-magazine prob. diff.1.21.62.2-1.1-1.0-1.51.5
Pavlov. Cond. response bias0.40.60.8-0.9-0.4-0.90.9
Time in closed arm before self-admin0.10.10.2-0.20.00.4-0.4
Time in closed arm after self-admin0.10.10.1-0.0-0.2-0.30.3
Time in open arm before self-admin0.10.10.30.50.2-0.30.3
Time in open arm after self-admin0.10.10.40.60.30.2-0.2
Bone: periosteal estimation0.10.30.90.40.90.3-0.3
Bone: periosteal perimeter0.10.10.2-0.40.5-0.00.0
Bone: post-yield work0.10.20.4-0.3-0.0-0.60.6
Progressive ratio test 1 active lever presses1.72.13.11.11.01.8-1.8
Progressive ratio test 1 breakpoint1.61.92.91.01.01.7-1.7
Progressive ratio test 1 inactive lever presses0.00.10.1-0.40.30.1-0.1
Progressive ratio test 2 active lever presses4.65.47.32.71.92.3-2.3
Progressive ratio test 2 breakpoint4.85.57.52.71.92.3-2.3
Progressive ratio test 2 inactive lever presses0.91.51.61.11.21.3-1.3
Incentive Sensitization - Responses2.23.05.42.31.31.6-1.6
Incentive Sensitization - Breakpoint2.53.26.02.41.41.6-1.6
Sum of active levers in priming session hrs 5-60.00.00.00.10.2-0.20.2
Progressive ratio0.10.10.30.50.30.3-0.3
Food seeking constrained by brief footshock1.31.62.01.41.41.1-1.1
Seeking ratio, punishment vs. effort0.10.10.10.40.40.3-0.3
Retroperitoneal fat weight0.00.00.1-0.20.30.1-0.2
Reaction time number correct0.61.21.31.11.01.1-1.1
Reaction time mean minus median0.10.10.30.40.50.2-0.2
Reaction time mean minus median AUC0.00.10.20.50.20.2-0.2
Reaction time num false alarms0.10.20.30.6-0.3-0.30.3
Reaction time num false alarms AUC0.30.50.80.0-0.9-0.80.8
Reaction time trials correct on left0.61.21.31.11.01.1-1.1
Reaction time trials on left0.51.01.11.10.91.0-1.0
Reaction time mean0.00.10.1-0.3-0.30.2-0.2
Reaction time mean AUC0.00.10.1-0.3-0.40.2-0.2
Median of all reaction times0.10.10.3-0.4-0.60.2-0.2
Reaction time omissions2.33.44.5-1.6-2.1-1.81.8
Reaction time false alarm rate1.01.31.7-0.6-1.3-1.21.3
Reaction time premature initiation rate0.10.10.4-0.60.1-0.10.1
Reaction time premature initiations0.10.20.4-0.20.60.4-0.4
Std. dev. reaction times0.40.81.1-0.6-1.1-0.90.9
Reaction time trials completed0.51.01.11.10.91.0-1.0
Reaction time trials AUC0.50.91.21.10.80.9-0.9
Run reversals in cocaine runway, females2.72.73.2-1.4-1.6-1.81.8
Run reversals in cocaine runway, males1.21.21.9-1.2-1.4-0.90.9
Latency to leave start box in cocaine runway0.30.41.5-1.2-0.20.0-0.0
Latency to leave start box in cocaine runway, F0.10.10.3-0.60.20.3-0.3
Latency to leave start box in cocaine runway, M0.20.20.7-0.80.00.3-0.3
Std. dev. time between licks in bursts1.52.02.7-0.7-1.5-1.61.6
Total sessions with >9 infusions0.91.11.40.71.11.2-1.2
Short access day 1 total inactive lever presses0.20.30.6-0.70.20.5-0.5
Short access day 10 total inactive lever presses1.53.66.2-2.5-0.8-2.01.9
Short access day 1 total infusions0.60.71.20.40.61.1-1.1
Short access day 10 total infusions2.63.45.32.31.41.7-1.7
Short access total infusions1.41.72.21.11.21.5-1.5
Short access day 1 locomotion1.51.83.71.91.40.9-0.9
Short access day 10 total locomotion0.30.61.60.81.3-0.30.3
Short access total locomotion1.51.83.31.11.81.1-1.1
One hour access (0.3 mA shock)5.66.411.63.42.02.3-2.2
Compulsive drug intake0.10.10.1-0.3-0.40.1-0.1
One hour access (shock baseline)2.53.87.42.71.71.6-1.5
Social response proportion0.10.20.6-0.80.10.0-0.1
Social responses0.91.22.0-1.4-0.6-1.11.1
Social time0.20.20.6-0.8-0.4-0.20.2
Soleus weight0.92.65.42.31.11.4-1.4
Bone: stiffness0.00.10.20.4-0.1-0.20.2
Tibialis anterior weight2.48.110.02.73.22.8-2.8
Time to tail flick, vehicle, before self-admin0.20.20.4-0.70.10.5-0.5
Time to tail flick, vehicle, after self-admin2.02.74.1-0.3-2.0-1.81.8
Time to tail flick, test, before self-admin0.10.10.20.10.40.4-0.4
Time to tail flick, test, after self-admin0.60.60.9-0.4-0.8-0.90.9
Delta time to tail flick, vehicle, before/after SA3.02.93.6-1.0-1.9-1.81.9
Delta time to tail flick, test, before/after SA0.50.50.8-0.7-0.9-0.70.7
Tibia length0.41.23.3-1.8-1.0-0.50.5
Ambulatory time before self-admin0.40.60.8-0.8-0.6-0.90.9
Ambulatory time after self-admin0.20.20.40.70.60.4-0.3
Bone: tissue strength0.50.50.8-0.40.90.7-0.8
Total heroin consumption0.40.50.8-0.4-0.7-0.80.9
Bone: trabecular number0.20.31.0-1.00.0-0.20.1
Bone: trabecular spacing0.70.91.81.30.80.8-0.8
Bone: trabecular thickness0.30.30.8-0.9-0.4-0.40.4
Bone: trabecular tissue density0.91.31.7-0.51.21.3-1.3
Water consumed over 24 hours0.00.10.20.10.40.1-0.1
Number of responses in last shaping day1.61.83.61.91.50.8-0.8