Mindy2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC gene expression Mindy2 0.26 0.19 6.8e-04 0.08 0.08 0.09 0.07 7.2e-03 6.9e-03 4.8e-03 7.8e-03
2 PL gene expression Mindy2 0.05 0.04 3.6e-06 0.04 0.04 0.04 0.04 3.7e-05 1.4e-05 5.7e-05 3.4e-05
3 Adipose gene expression Mindy2 0.07 0.06 1.2e-08 0.06 0.06 0.06 0.06 6.4e-07 4.9e-07 5.0e-07 6.5e-07
4 Liver gene expression Mindy2 0.43 0.25 1.4e-08 0.05 0.05 0.06 0.05 1.4e-06 1.7e-06 6.8e-07 1.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.60.80.8-0.9-0.9-0.2
Area under the delay curve0.20.20.7-0.4-0.1-0.10.8
BMI with tail4.715.119.0-4.44.04.12.9
BMI without tail2.14.35.5-2.12.32.41.2
Body weight3.615.118.9-4.14.34.32.5
Weight adjusted by age6.27.011.0-3.32.82.71.4
Bone surface0.10.10.1-0.40.40.30.2
Bone volume0.00.00.00.10.10.00.1
Breakpoint value in progressive ratio session0.30.30.40.00.60.7-0.6
Number of licking bursts1.51.82.31.3-1.5-1.5-1.0
Context. condit. distance diff. score0.70.91.30.9-1.2-1.1-0.3
Locomotion velocity, session 12.42.66.3-0.71.41.3-2.5
Locomotion distance, session 10.70.92.70.5-0.5-0.5-1.6
Locomotion velocity, session 20.40.40.8-0.90.50.5-0.6
Locomotion distance, session 20.60.82.5-0.40.50.4-1.6
Locomotion velocity, session 30.20.30.60.7-0.1-0.1-0.8
Locomotion distance, session 32.22.43.82.0-1.5-1.4-1.3
Stereotopy head waving bouts, day 31.31.63.0-1.30.80.81.7
Stereotopy head waving duration, day 31.41.72.7-1.50.90.91.7
Locomotion velocity, session 74.95.412.92.2-1.4-1.4-3.6
Locomotion distance, session 74.35.414.21.9-1.4-1.4-3.8
Stereotopy head waving bouts, day 72.52.86.9-1.41.11.12.6
Stereotopy head waving duration, day 72.63.27.6-1.71.01.12.8
Locomotion velocity, session 81.31.65.40.10.60.6-2.3
Locomotion distance, session 80.91.33.00.7-0.9-0.9-1.7
Degree of sensitization distance0.40.41.20.2-0.4-0.4-1.1
Degree of sensitization stereotypy1.41.53.2-1.20.80.81.8
Conditioned locomotion0.00.10.10.2-0.3-0.30.1
Cocaine response after cond. corrected2.52.83.8-1.92.02.00.0
Cocaine response after cond. not corrected1.51.62.0-1.41.41.4-0.7
Cocaine response before conditioning1.01.21.51.2-1.2-1.2-0.7
Saline control response0.40.51.8-0.0-0.4-0.41.3
Bone: connectivity density0.71.11.51.2-1.2-1.2-0.1
Bone: cortical apparent density0.50.61.01.0-0.8-0.8-0.4
Bone: cortical area0.10.10.20.4-0.0-0.00.4
Bone: cortical porosity0.70.81.81.3-0.9-0.8-0.1
Bone: cortical porosity1.51.62.51.6-1.3-1.3-0.8
Bone: cortical thickness1.01.72.81.7-1.4-1.4-0.4
Bone: cortical thickness0.60.71.01.0-0.8-0.9-0.3
Bone: cortical tissue density0.50.61.01.0-0.8-0.8-0.4
Condit. Reinf. active minus inactive responses0.00.00.10.3-0.1-0.1-0.1
Condit. Reinf. active-inactive response ratio0.40.40.60.6-0.8-0.8-0.0
Condit. Reinf. active responses0.20.30.5-0.30.70.70.1
Condit. Reinf. inactive responses0.91.01.5-1.01.21.20.1
Incentive salience index mean0.00.00.00.20.00.0-0.2
Condit. Reinf. lever presses0.00.10.20.2-0.1-0.1-0.4
Condit. Reinf. active minus inactive responses2.53.14.0-2.01.91.91.2
Condit. Reinf. active-inactive response ratio1.81.93.0-1.71.01.01.6
Condit. Reinf. active responses1.01.42.0-1.21.41.40.5
Condit. Reinf. inactive responses0.60.82.11.0-0.0-0.1-1.5
Condit. Reinf. lever presses0.40.60.80.9-0.8-0.90.0
Condit. Reinf. lever reinforcers received0.60.81.1-0.91.01.00.6
Conditioned reinforcement - actives0.70.72.3-0.7-0.1-0.01.5
Conditioned reinforcement - inactives0.00.00.10.1-0.1-0.10.4
Conditioned locomotion0.40.50.9-0.1-0.7-0.70.9
Patch foraging indifference point 0 sec0.20.30.5-0.30.70.7-0.1
Patch foraging indifference point AUC0.40.51.70.40.20.2-1.3
Delay disc. indifference point, 0s delay0.30.30.7-0.3-0.5-0.50.8
Delay disc. indifference point, 16s delay0.40.41.00.2-0.5-0.51.0
Delay disc. indifference point, 2s delay0.30.41.3-0.2-0.3-0.31.1
Delay disc. indifference point, 24s delay0.20.20.30.4-0.5-0.50.3
Delay disc. indifference point, 4s delay0.20.30.7-0.1-0.4-0.40.9
Delay disc. indifference point, 8s delay0.00.00.1-0.30.20.20.1
Indifference point function ln k0.40.61.2-1.10.70.60.7
Indifference point function log k0.40.61.2-1.10.70.60.7
Patch foraging total patch changes 0 sec0.20.40.7-0.40.80.8-0.1
Patch foraging total patch changes 12 sec0.10.20.50.7-0.0-0.0-0.5
Patch foraging total patch changes 18 sec0.10.10.2-0.40.40.50.0
Patch foraging total patch changes 24 sec0.30.41.3-0.10.50.4-1.1
Patch foraging total patch changes 6 sec0.50.71.3-0.30.80.8-1.2
Patch foraging time to switch 0 sec1.32.03.41.8-1.5-1.5-0.2
Patch foraging water rate 0 sec2.13.44.5-2.12.12.00.7
Patch foraging water rate 12 sec3.65.58.2-2.92.62.60.3
Patch foraging water rate 18 sec0.70.92.1-1.50.90.80.1
Patch foraging water rate 24 sec0.40.61.30.00.70.7-1.2
Patch foraging water rate 6 sec1.62.34.4-2.11.41.41.0
Seeking ratio, delayed vs. immediate footshock0.40.50.8-0.60.90.9-0.0
Distance traveled before self-admin1.11.14.40.3-0.2-0.12.1
Distance traveled after self-admin0.91.01.4-0.61.21.21.1
Extensor digitorum longus weight6.023.731.9-5.15.65.62.3
Bone: elastic displacement0.40.40.6-0.70.60.60.5
Bone: elastic work0.00.10.10.30.20.20.2
Bone: endosteal estimation2.04.35.6-2.42.22.21.4
Bone: endosteal perimeter3.06.27.8-2.82.72.71.6
Epididymis fat weight0.10.30.9-0.60.20.21.0
Delta time in closed arm before/after self-admin0.10.10.20.2-0.3-0.30.4
Delta time in open arm before/after self-admin1.11.01.51.1-0.9-0.8-1.2
Diff in mean of infusions in LGA sessions1.11.22.3-1.50.91.00.9
Delay discount exponential model param0.20.20.70.3-0.0-0.0-0.8
Extinction: sum of active levers before priming0.00.00.0-0.2-0.1-0.1-0.2
Active lever presses in extinction session 60.10.10.10.0-0.3-0.30.4
Bone: final force0.30.50.9-0.20.90.9-0.4
Bone: final moment0.10.20.40.20.50.5-0.6
Food consumed during 24 hour testing period2.22.77.3-1.40.90.92.7
Glucose0.40.61.0-0.71.01.00.4
Heart weight0.20.30.5-0.10.70.70.6
Delay discount hyperbolic model param0.20.20.80.20.10.1-0.9
Intermittent access intake day 1-15 change1.01.01.31.1-1.1-1.1-0.5
Intermittent access intake escalation1.21.21.71.1-1.3-1.3-0.3
Intermittent access intake escalation 20.10.10.10.1-0.3-0.20.3
Intermitt. access day 1 inactive lever presses1.21.31.81.1-1.3-1.3-0.5
Intermitt. access day 15 inactive lever presses0.70.82.10.5-0.6-0.51.5
Intermitt. access escalation Index0.80.71.0-0.81.01.00.2
Intermittent access day 1 total infusions0.30.40.60.6-0.8-0.70.3
Intermittent access day 15 total infusions1.41.62.31.4-1.5-1.40.3
Intermittent access terminal intake (last 3 days)0.80.91.61.3-1.0-0.90.4
Intermittent access total infusions0.40.40.50.7-0.7-0.70.4
Intermittent access day 1 locomotion1.41.52.60.8-1.6-1.60.3
Intermittent access day 15 total locomotion1.11.12.20.2-1.5-1.50.5
Intermittent access total locomotion0.70.82.0-1.0-0.3-0.31.4
Intermittent access standard deviation1.41.52.11.5-1.4-1.4-0.1
Left kidney weight1.95.46.5-2.42.52.61.7
Right kidney weight1.85.17.5-2.22.72.71.1
Cocaine induced anxiety0.10.10.40.6-0.3-0.30.1
Post-drug Anxiety1.92.13.01.7-1.3-1.4-1.3
Baseline Anxiety0.60.71.60.6-0.6-0.6-1.2
Tail length0.10.30.5-0.40.70.70.5
Length with tail0.72.74.0-1.42.02.00.9
Length without tail2.04.45.5-2.32.12.11.8
Times rat made contact with spout0.60.61.80.2-0.6-0.61.3
Lifetime Intake0.50.50.91.0-0.8-0.7-0.1
Liver weight, left0.81.21.8-1.41.21.20.4
Liver weight, right1.42.43.7-1.51.91.9-0.0
Locomotor activity5.48.511.4-3.43.13.11.7
Locomotor testing distance3.45.79.9-3.12.32.31.5
Locomotor testing rearing1.72.64.1-2.01.71.70.7
Locomotion in novel chamber0.60.81.10.1-1.0-1.00.9
Locomotion in novel chamber post-restriction0.40.50.91.0-0.7-0.7-0.4
Fecal boli incidents, locomotor time 10.30.31.00.5-0.2-0.21.0
Change in fecal boli incidents, locomotor task0.40.30.9-0.40.40.4-0.9
Time >=10cm from walls, locomotor time 10.80.82.1-1.40.50.40.9
Bouts of movement, locomotor time 10.20.20.3-0.50.40.40.5
Total resting periods, locomotor time 10.30.30.5-0.70.40.40.6
Rest time, locomotor task time 10.20.20.6-0.80.10.0-0.1
Distance moved, locomotor task time 10.10.10.20.4-0.3-0.30.1
Vertical activity count, locomotor time 10.30.30.40.6-0.5-0.40.7
Time >=10cm from walls, locomotor time 20.10.20.5-0.70.20.10.2
Bouts of movement, locomotor time 22.12.23.5-1.91.41.41.3
Total resting periods, locomotor time 22.32.54.1-2.01.51.41.3
Rest time, locomotor task time 20.10.10.20.3-0.4-0.4-0.0
Distance moved, locomotor task time 20.00.00.10.1-0.0-0.1-0.3
Vertical activity count, locomotor time 20.40.50.60.7-0.8-0.80.4
Light reinforcement 12.24.05.6-2.02.42.31.0
Light reinforcement 20.30.40.80.9-0.4-0.5-0.5
Bone: marrow area2.04.45.8-2.42.22.21.4
Bone: maximum diameter1.83.34.1-2.02.02.01.0
Bone: maximum force0.40.71.1-0.71.01.00.4
Bone: maximum moment0.10.20.4-0.20.60.60.2
Mean time between licks in bursts0.20.30.40.5-0.6-0.6-0.3
Mean num. licks in bursts1.11.32.4-1.01.01.01.5
Cd content in liver0.30.30.8-0.4-0.3-0.30.9
Co content in liver0.00.00.10.2-0.1-0.1-0.4
Cu content in liver0.20.20.40.00.60.6-0.0
Fe content in liver0.30.40.50.6-0.7-0.70.4
K content in liver1.61.62.2-1.31.51.50.5
Mg content in liver2.52.63.9-1.62.02.00.2
Mn content in liver0.20.20.60.20.10.10.8
Na content in liver2.02.13.1-1.51.81.8-0.3
Rb content in liver1.61.93.4-1.81.51.40.3
Se content in liver0.20.30.40.4-0.7-0.70.2
Sr content in liver0.00.00.10.3-0.1-0.1-0.2
Zn content in liver0.40.51.11.0-0.6-0.6-0.1
Bone: minimum diameter0.10.31.10.2-0.1-0.11.0
Time in familiar zone, hab. session 10.70.72.70.2-0.0-0.1-1.6
Time in novel zone, hab. session 10.30.31.20.0-0.3-0.21.1
Total zone transitions, hab. session 10.81.11.81.3-0.7-0.7-1.3
Total locomotion distance, hab. session 10.10.10.40.4-0.1-0.2-0.6
Locomotion velocity, hab. session 10.00.00.0-0.00.10.10.2
Time in familiar zone, hab. session 21.41.44.31.1-0.1-0.1-2.1
Time in novel zone, hab. session 21.11.14.0-0.6-0.2-0.22.0
Total zone transitions, hab. session 20.30.40.8-0.20.60.6-0.9
Total locomotion distance, hab. session 20.50.71.1-0.81.01.00.3
Locomotion velocity, hab. session 20.30.40.6-0.60.80.70.3
Novel to familiar place preference ratio1.31.32.4-1.51.01.01.0
Novelty place preference1.21.32.3-1.51.01.00.8
Time in novel zone, NPP test1.31.42.3-1.51.11.10.8
Total zone transitions, NPP test0.20.20.4-0.50.60.60.0
Total locomotion distance, NPP test0.50.70.9-0.71.01.00.5
Locomotion velocity, NPP test0.20.30.4-0.50.60.60.5
Intraocular pressure0.00.00.0-0.20.10.1-0.0
Delta distance traveled before/after self-admin1.21.31.8-0.91.31.3-1.0
Delta ambulatory time before/after self-admin0.70.71.1-0.60.90.8-1.0
Parametrial fat weight0.10.20.60.10.30.3-0.8
Pavlov. Cond. lever latency0.30.41.20.4-0.4-0.3-1.1
Pavlov. Cond. magazine entry latency0.81.01.61.3-0.9-0.9-1.0
Pavlov. Cond. change in total contacts1.41.55.6-0.6-0.0-0.02.4
Pavlov. Cond. index score0.40.50.91.0-0.8-0.80.2
Pavlov. Cond. latency score0.20.20.50.7-0.4-0.40.3
Pavlov. Cond. lever contacts0.10.10.30.3-0.0-0.00.5
Pavlov. Cond. magazine entry number0.81.01.4-1.21.11.10.1
Pavlov. Cond. intertrial magazine entries0.40.51.70.20.40.4-1.3
Pavlov. Cond. lever-magazine prob. diff.0.30.40.80.9-0.6-0.60.1
Pavlov. Cond. response bias0.30.40.60.8-0.7-0.70.3
Pavlov. Cond. lever latency0.71.01.7-1.30.80.81.0
Pavlov. Cond. magazine entry latency2.73.14.82.2-1.9-1.9-0.6
Pavlov. Cond. change in total contacts0.30.40.50.7-0.7-0.7-0.3
Pavlov. Cond. index score0.91.21.81.3-1.0-1.0-0.9
Pavlov. Cond. latency score0.60.71.21.1-0.8-0.8-0.6
Pavlov. Cond. lever contacts0.20.30.60.8-0.4-0.5-0.5
Pavlov. Cond. magazine entry number2.83.45.0-2.21.91.91.3
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.60.90.9-0.4
Pavlov. Cond. lever-magazine prob. diff.1.21.52.21.5-1.1-1.1-1.1
Pavlov. Cond. response bias0.91.22.01.4-1.1-1.1-0.6
Time in closed arm before self-admin0.91.02.5-1.6-0.4-0.41.1
Time in closed arm after self-admin0.40.40.7-0.8-0.3-0.30.8
Time in open arm before self-admin0.80.81.71.30.90.9-0.1
Time in open arm after self-admin1.11.23.31.80.00.0-1.3
Bone: periosteal estimation1.22.42.8-1.51.71.71.3
Bone: periosteal perimeter1.72.93.5-1.71.91.91.3
Bone: post-yield work0.30.40.8-0.70.40.40.9
Progressive ratio test 1 active lever presses0.10.10.2-0.40.20.30.3
Progressive ratio test 1 breakpoint0.00.00.0-0.1-0.2-0.10.2
Progressive ratio test 1 inactive lever presses1.51.62.21.5-1.1-1.0-1.5
Progressive ratio test 2 active lever presses0.20.20.5-0.70.30.30.5
Progressive ratio test 2 breakpoint0.30.30.7-0.90.50.50.3
Progressive ratio test 2 inactive lever presses0.50.60.90.6-1.0-0.90.3
Incentive Sensitization - Responses0.30.30.5-0.70.50.50.5
Incentive Sensitization - Breakpoint0.10.10.3-0.50.30.30.3
Sum of active levers in priming session hrs 5-60.20.20.5-0.70.20.20.3
Progressive ratio0.91.11.21.0-1.1-1.11.0
Food seeking constrained by brief footshock0.30.40.7-0.40.90.8-0.3
Seeking ratio, punishment vs. effort3.03.65.4-1.92.32.3-0.6
Retroperitoneal fat weight0.10.20.5-0.70.50.50.1
Reaction time number correct2.02.96.0-2.51.61.60.5
Reaction time mean minus median0.81.12.51.6-0.4-0.3-1.3
Reaction time mean minus median AUC1.62.03.71.9-0.8-0.8-1.8
Reaction time num false alarms0.91.21.81.4-0.8-0.9-1.2
Reaction time num false alarms AUC0.30.40.80.8-0.4-0.4-0.9
Reaction time trials correct on left2.02.96.0-2.51.61.60.5
Reaction time trials on left2.13.06.2-2.51.71.60.5
Reaction time mean3.04.26.72.6-1.8-1.8-1.9
Reaction time mean AUC2.63.55.82.4-1.5-1.5-1.9
Median of all reaction times3.64.96.82.6-2.2-2.2-1.8
Reaction time omissions0.20.20.4-0.20.60.7-0.1
Reaction time false alarm rate1.72.44.82.2-1.3-1.3-1.1
Reaction time premature initiation rate1.21.62.5-1.21.61.6-0.3
Reaction time premature initiations2.53.54.8-2.22.12.1-0.2
Std. dev. reaction times1.62.24.72.2-1.1-1.0-1.4
Reaction time trials completed2.13.06.2-2.51.71.60.5
Reaction time trials AUC1.82.65.7-2.41.51.50.5
Run reversals in cocaine runway, females0.10.10.3-0.50.10.10.6
Run reversals in cocaine runway, males0.10.10.1-0.30.20.2-0.3
Latency to leave start box in cocaine runway1.51.72.1-1.41.41.40.8
Latency to leave start box in cocaine runway, F0.20.30.4-0.40.50.50.6
Latency to leave start box in cocaine runway, M2.82.73.8-1.91.71.81.0
Std. dev. time between licks in bursts0.30.30.6-0.60.80.7-0.1
Total sessions with >9 infusions0.30.30.60.8-0.2-0.1-0.7
Short access day 1 total inactive lever presses0.20.30.50.7-0.3-0.3-0.6
Short access day 10 total inactive lever presses0.60.61.20.1-1.1-1.10.4
Short access day 1 total infusions0.60.71.71.3-0.7-0.6-0.5
Short access day 10 total infusions0.70.82.01.4-0.6-0.6-0.6
Short access total infusions1.21.32.71.6-1.0-0.9-0.9
Short access day 1 locomotion0.20.20.90.9-0.2-0.2-0.1
Short access day 10 total locomotion0.00.00.1-0.20.10.10.2
Short access total locomotion1.01.01.91.4-1.0-1.0-0.4
One hour access (0.3 mA shock)0.20.20.5-0.50.20.20.7
Compulsive drug intake0.40.40.7-0.60.80.8-0.2
One hour access (shock baseline)0.40.50.70.5-0.9-0.80.5
Social response proportion0.60.71.60.8-0.5-0.51.3
Social responses0.10.10.30.30.20.30.5
Social time0.40.62.20.30.00.01.5
Soleus weight12.335.950.1-6.47.17.11.8
Bone: stiffness1.01.52.0-1.21.41.41.0
Tibialis anterior weight9.632.744.0-6.06.66.62.7
Time to tail flick, vehicle, before self-admin0.10.10.4-0.6-0.0-0.1-0.1
Time to tail flick, vehicle, after self-admin0.70.71.8-0.9-0.5-0.51.3
Time to tail flick, test, before self-admin0.70.71.11.1-0.9-0.9-0.1
Time to tail flick, test, after self-admin2.52.65.32.3-1.6-1.60.1
Delta time to tail flick, vehicle, before/after SA0.30.30.60.3-0.6-0.60.8
Delta time to tail flick, test, before/after SA0.10.10.30.5-0.1-0.10.3
Tibia length0.51.45.1-0.4-0.5-0.52.3
Ambulatory time before self-admin0.50.50.80.9-0.5-0.40.9
Ambulatory time after self-admin0.30.30.60.00.80.8-0.3
Bone: tissue strength1.71.62.71.6-1.3-1.3-0.6
Total heroin consumption1.11.32.2-1.01.51.50.1
Bone: trabecular number1.11.72.21.4-1.4-1.5-0.8
Bone: trabecular spacing0.00.00.0-0.10.10.10.1
Bone: trabecular thickness0.20.20.30.4-0.5-0.50.4
Bone: trabecular tissue density4.36.08.2-2.72.92.8-0.4
Water consumed over 24 hours0.60.71.40.5-0.8-0.71.2
Number of responses in last shaping day0.10.10.10.2-0.3-0.30.3