Med24

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA isoform ratio XM_006247416.4 0.71 0.11 4.8e-04 -0 0.02 0.05 0.03 5.0e-01 2.9e-02 9.2e-04 7.4e-03
2 BLA alternative TSS XM_039086760.1 0.62 0.15 2.5e-03 0.02 0.02 0.05 0.04 2.3e-02 2.4e-02 8.6e-04 3.8e-03
3 BLA alternative TSS XM_039086760.1 0.58 0.14 1.1e-03 0.03 0.04 0.06 0.05 1.0e-02 4.0e-03 5.0e-04 1.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density3.45.86.3-2.52.32.4
Area under the delay curve1.31.61.7-1.21.21.3
BMI with tail0.51.72.21.5-1.3-1.1
BMI without tail0.30.91.41.2-1.0-0.6
Body weight3.615.918.44.3-4.0-3.7
Weight adjusted by age0.10.10.20.4-0.4-0.3
Bone surface0.00.00.1-0.10.00.3
Bone volume0.10.20.3-0.50.30.5
Breakpoint value in progressive ratio session0.70.91.00.9-1.0-0.9
Number of licking bursts0.00.00.0-0.1-0.00.0
Context. condit. distance diff. score0.20.30.40.7-0.4-0.5
Locomotion velocity, session 12.42.52.91.4-1.7-1.7
Locomotion distance, session 13.34.24.72.1-2.2-1.9
Locomotion velocity, session 20.40.40.50.6-0.7-0.7
Locomotion distance, session 20.20.30.50.6-0.7-0.4
Locomotion velocity, session 30.50.60.8-0.60.90.8
Locomotion distance, session 30.00.10.10.3-0.2-0.1
Stereotopy head waving bouts, day 33.44.04.2-2.02.02.0
Stereotopy head waving duration, day 30.30.40.4-0.70.60.6
Locomotion velocity, session 71.31.51.91.4-1.1-1.1
Locomotion distance, session 71.31.61.71.3-1.2-1.2
Stereotopy head waving bouts, day 74.14.65.0-1.92.22.2
Stereotopy head waving duration, day 72.83.43.9-1.62.01.9
Locomotion velocity, session 87.99.49.83.1-3.0-3.1
Locomotion distance, session 81.11.61.81.3-1.3-1.2
Degree of sensitization distance2.32.32.41.5-1.5-1.6
Degree of sensitization stereotypy4.65.05.4-2.02.32.3
Conditioned locomotion0.50.60.7-0.70.80.7
Cocaine response after cond. corrected1.21.51.8-1.21.11.3
Cocaine response after cond. not corrected0.70.81.0-1.00.71.0
Cocaine response before conditioning0.10.10.20.2-0.4-0.4
Saline control response0.30.30.40.6-0.6-0.6
Bone: connectivity density4.46.97.3-2.72.52.6
Bone: cortical apparent density4.35.96.8-2.62.42.3
Bone: cortical area0.20.30.3-0.50.50.5
Bone: cortical porosity0.20.20.3-0.60.40.4
Bone: cortical porosity0.00.00.0-0.20.10.1
Bone: cortical thickness2.13.53.7-1.91.91.8
Bone: cortical thickness4.35.15.6-2.42.32.1
Bone: cortical tissue density4.15.66.5-2.62.32.2
Condit. Reinf. active minus inactive responses1.21.41.5-1.21.21.1
Condit. Reinf. active-inactive response ratio2.42.63.0-1.51.71.6
Condit. Reinf. active responses0.50.60.7-0.80.80.7
Condit. Reinf. inactive responses0.10.10.10.1-0.3-0.3
Incentive salience index mean1.11.41.6-1.31.21.1
Condit. Reinf. lever presses0.30.40.6-0.80.60.5
Condit. Reinf. active minus inactive responses0.10.10.1-0.40.20.2
Condit. Reinf. active-inactive response ratio0.30.30.4-0.60.50.6
Condit. Reinf. active responses0.10.10.2-0.50.20.2
Condit. Reinf. inactive responses0.10.10.2-0.50.20.3
Condit. Reinf. lever presses0.10.10.1-0.30.30.2
Condit. Reinf. lever reinforcers received0.20.20.4-0.60.40.4
Conditioned reinforcement - actives0.20.40.50.6-0.7-0.6
Conditioned reinforcement - inactives0.40.61.00.4-1.0-0.8
Conditioned locomotion0.00.00.0-0.20.00.0
Patch foraging indifference point 0 sec0.81.51.7-1.21.21.3
Patch foraging indifference point AUC0.20.30.3-0.60.50.6
Delay disc. indifference point, 0s delay1.21.31.7-1.31.01.1
Delay disc. indifference point, 16s delay2.12.42.7-1.41.71.5
Delay disc. indifference point, 2s delay0.50.50.8-0.90.50.8
Delay disc. indifference point, 24s delay0.20.20.3-0.30.50.6
Delay disc. indifference point, 4s delay0.80.81.2-1.10.80.8
Delay disc. indifference point, 8s delay0.80.91.0-0.91.01.0
Indifference point function ln k0.40.81.0-0.71.00.9
Indifference point function log k0.40.81.0-0.71.00.9
Patch foraging total patch changes 0 sec0.51.01.1-1.01.01.1
Patch foraging total patch changes 12 sec2.43.23.9-2.01.61.8
Patch foraging total patch changes 18 sec0.20.30.3-0.50.50.6
Patch foraging total patch changes 24 sec1.93.23.5-1.81.91.7
Patch foraging total patch changes 6 sec1.01.51.7-1.21.11.3
Patch foraging time to switch 0 sec0.00.00.0-0.0-0.0-0.0
Patch foraging water rate 0 sec0.00.00.0-0.20.00.0
Patch foraging water rate 12 sec0.30.50.60.8-0.6-0.8
Patch foraging water rate 18 sec1.42.12.3-1.41.51.5
Patch foraging water rate 24 sec0.10.10.1-0.30.30.3
Patch foraging water rate 6 sec1.11.61.9-1.41.21.2
Seeking ratio, delayed vs. immediate footshock1.01.31.81.0-1.0-1.3
Distance traveled before self-admin1.21.61.91.0-1.4-1.4
Distance traveled after self-admin0.50.60.80.6-0.8-0.9
Extensor digitorum longus weight9.236.239.56.3-5.7-6.0
Bone: elastic displacement0.00.10.1-0.20.20.3
Bone: elastic work0.10.20.2-0.40.30.5
Bone: endosteal estimation2.55.56.12.5-2.4-2.2
Bone: endosteal perimeter2.24.74.92.2-2.2-2.1
Epididymis fat weight0.41.31.70.9-1.3-1.2
Delta time in closed arm before/after self-admin0.30.30.60.8-0.4-0.5
Delta time in open arm before/after self-admin0.10.10.20.2-0.4-0.5
Diff in mean of infusions in LGA sessions0.00.00.00.1-0.1-0.1
Delay discount exponential model param1.21.41.51.1-1.2-1.2
Extinction: sum of active levers before priming0.00.00.00.0-0.00.1
Active lever presses in extinction session 61.21.21.4-1.20.81.2
Bone: final force0.71.11.3-1.11.01.1
Bone: final moment0.61.01.2-1.00.91.1
Food consumed during 24 hour testing period1.11.51.61.2-1.3-1.2
Glucose0.10.20.5-0.7-0.00.1
Heart weight3.24.95.12.2-2.2-2.2
Delay discount hyperbolic model param0.80.91.00.9-0.9-1.0
Intermittent access intake day 1-15 change0.00.00.1-0.20.20.2
Intermittent access intake escalation0.00.00.0-0.20.00.1
Intermittent access intake escalation 20.10.20.20.3-0.5-0.4
Intermitt. access day 1 inactive lever presses0.72.63.2-1.81.51.5
Intermitt. access day 15 inactive lever presses1.02.12.3-1.51.41.3
Intermitt. access escalation Index0.10.20.4-0.10.60.4
Intermittent access day 1 total infusions0.61.01.20.8-1.1-1.0
Intermittent access day 15 total infusions0.10.20.20.2-0.5-0.4
Intermittent access terminal intake (last 3 days)0.00.00.1-0.0-0.3-0.1
Intermittent access total infusions0.50.60.80.6-0.9-0.8
Intermittent access day 1 locomotion0.50.70.80.7-0.9-0.8
Intermittent access day 15 total locomotion0.10.20.40.3-0.6-0.4
Intermittent access total locomotion0.00.00.1-0.20.10.2
Intermittent access standard deviation0.10.20.4-0.60.10.3
Left kidney weight0.10.40.50.7-0.5-0.7
Right kidney weight0.00.10.1-0.40.20.3
Cocaine induced anxiety0.20.20.50.7-0.3-0.2
Post-drug Anxiety0.10.10.20.10.30.4
Baseline Anxiety0.20.20.3-0.60.40.4
Tail length0.72.83.31.8-1.7-1.5
Length with tail2.711.712.83.6-3.4-3.3
Length without tail2.78.79.03.0-2.9-2.9
Times rat made contact with spout0.80.91.0-1.00.91.0
Lifetime Intake0.20.30.50.4-0.7-0.6
Liver weight, left0.10.20.20.5-0.5-0.3
Liver weight, right2.64.65.0-2.12.12.2
Locomotor activity0.10.10.3-0.60.10.3
Locomotor testing distance1.42.53.1-1.81.51.5
Locomotor testing rearing4.69.310.0-3.22.93.1
Locomotion in novel chamber1.51.92.4-1.51.31.3
Locomotion in novel chamber post-restriction0.00.00.1-0.20.00.1
Fecal boli incidents, locomotor time 10.60.91.10.9-1.1-0.9
Change in fecal boli incidents, locomotor task0.20.20.2-0.50.40.4
Time >=10cm from walls, locomotor time 10.70.71.0-0.61.00.9
Bouts of movement, locomotor time 10.10.10.20.00.40.4
Total resting periods, locomotor time 10.10.10.30.5-0.2-0.2
Rest time, locomotor task time 10.00.00.00.1-0.00.0
Distance moved, locomotor task time 10.00.00.0-0.0-0.1-0.1
Vertical activity count, locomotor time 10.51.11.21.0-1.1-1.1
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.0-0.0
Bouts of movement, locomotor time 20.91.52.0-1.01.41.2
Total resting periods, locomotor time 20.81.31.9-0.91.41.2
Rest time, locomotor task time 20.30.30.60.8-0.5-0.4
Distance moved, locomotor task time 20.00.00.1-0.20.10.2
Vertical activity count, locomotor time 20.10.10.10.4-0.3-0.3
Light reinforcement 11.33.34.0-2.01.71.7
Light reinforcement 20.20.40.7-0.80.30.6
Bone: marrow area2.45.35.82.4-2.3-2.2
Bone: maximum diameter0.00.10.10.3-0.3-0.3
Bone: maximum force0.00.00.00.1-0.00.1
Bone: maximum moment0.00.00.00.1-0.00.1
Mean time between licks in bursts0.82.02.01.4-1.4-1.4
Mean num. licks in bursts0.30.50.5-0.60.70.7
Cd content in liver0.91.01.21.1-1.0-0.9
Co content in liver1.61.82.01.4-1.3-1.3
Cu content in liver0.10.10.1-0.20.30.3
Fe content in liver2.73.33.61.8-1.9-1.7
K content in liver0.90.90.9-1.00.90.9
Mg content in liver1.71.82.0-1.31.41.3
Mn content in liver0.80.90.9-1.01.01.0
Na content in liver0.00.00.1-0.30.00.2
Rb content in liver2.02.42.5-1.61.41.6
Se content in liver5.16.06.7-2.62.32.4
Sr content in liver0.20.20.30.5-0.4-0.5
Zn content in liver2.73.03.3-1.81.71.7
Bone: minimum diameter0.40.70.80.9-0.8-0.7
Time in familiar zone, hab. session 10.80.81.00.8-1.0-0.9
Time in novel zone, hab. session 14.04.04.5-1.82.12.1
Total zone transitions, hab. session 13.04.24.32.1-2.1-2.0
Total locomotion distance, hab. session 10.00.00.00.2-0.1-0.1
Locomotion velocity, hab. session 10.50.70.70.7-0.8-0.9
Time in familiar zone, hab. session 20.20.20.2-0.50.30.5
Time in novel zone, hab. session 20.40.40.5-0.60.70.6
Total zone transitions, hab. session 21.01.21.41.1-1.2-1.0
Total locomotion distance, hab. session 20.20.20.30.5-0.6-0.4
Locomotion velocity, hab. session 20.60.80.90.8-1.0-0.8
Novel to familiar place preference ratio0.80.91.31.1-0.7-0.9
Novelty place preference0.60.60.91.0-0.5-0.8
Time in novel zone, NPP test0.10.10.20.4-0.0-0.3
Total zone transitions, NPP test2.02.93.81.5-1.9-1.6
Total locomotion distance, NPP test0.10.20.30.3-0.6-0.3
Locomotion velocity, NPP test0.91.21.71.0-1.3-1.0
Intraocular pressure3.65.26.02.4-2.2-2.1
Delta distance traveled before/after self-admin0.10.10.2-0.00.40.3
Delta ambulatory time before/after self-admin0.81.01.4-0.71.11.2
Parametrial fat weight0.10.10.2-0.50.20.3
Pavlov. Cond. lever latency2.22.82.91.7-1.6-1.7
Pavlov. Cond. magazine entry latency7.49.510.9-3.33.03.0
Pavlov. Cond. change in total contacts10.711.311.7-3.43.43.3
Pavlov. Cond. index score7.29.010.0-3.22.93.0
Pavlov. Cond. latency score5.97.48.0-2.82.62.7
Pavlov. Cond. lever contacts2.02.42.6-1.61.51.5
Pavlov. Cond. magazine entry number13.617.218.54.3-4.1-4.1
Pavlov. Cond. intertrial magazine entries1.21.41.71.3-1.1-1.2
Pavlov. Cond. lever-magazine prob. diff.8.110.011.2-3.43.03.1
Pavlov. Cond. response bias9.712.013.3-3.63.43.4
Pavlov. Cond. lever latency0.10.10.20.5-0.3-0.2
Pavlov. Cond. magazine entry latency1.41.61.91.0-1.4-1.4
Pavlov. Cond. change in total contacts0.00.00.1-0.0-0.2-0.3
Pavlov. Cond. index score0.10.20.30.2-0.5-0.5
Pavlov. Cond. latency score0.20.30.40.3-0.6-0.6
Pavlov. Cond. lever contacts0.10.10.3-0.50.30.3
Pavlov. Cond. magazine entry number0.20.30.4-0.30.60.6
Pavlov. Cond. intertrial magazine entries0.40.61.01.0-0.6-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.40.4-0.7-0.7
Pavlov. Cond. response bias0.10.10.3-0.60.20.2
Time in closed arm before self-admin2.33.03.3-1.71.61.8
Time in closed arm after self-admin0.50.50.6-0.60.80.8
Time in open arm before self-admin2.02.22.71.6-1.3-1.5
Time in open arm after self-admin1.41.51.71.2-1.2-1.3
Bone: periosteal estimation0.30.70.80.9-0.8-0.7
Bone: periosteal perimeter1.52.52.71.5-1.6-1.6
Bone: post-yield work0.60.91.21.1-0.9-0.9
Progressive ratio test 1 active lever presses0.10.20.3-0.30.30.5
Progressive ratio test 1 breakpoint0.10.20.3-0.30.40.5
Progressive ratio test 1 inactive lever presses0.20.30.3-0.50.50.6
Progressive ratio test 2 active lever presses0.60.71.00.5-1.0-0.9
Progressive ratio test 2 breakpoint0.60.71.00.5-1.0-0.9
Progressive ratio test 2 inactive lever presses0.71.11.50.8-1.2-1.1
Incentive Sensitization - Responses1.82.63.51.1-1.9-1.8
Incentive Sensitization - Breakpoint2.02.63.51.1-1.9-1.8
Sum of active levers in priming session hrs 5-61.71.61.8-1.31.21.3
Progressive ratio0.00.10.10.3-0.2-0.2
Food seeking constrained by brief footshock1.51.82.0-1.41.31.3
Seeking ratio, punishment vs. effort0.60.91.0-1.00.90.9
Retroperitoneal fat weight0.10.30.3-0.60.40.5
Reaction time number correct1.83.53.91.8-1.9-2.0
Reaction time mean minus median0.00.10.10.3-0.3-0.4
Reaction time mean minus median AUC0.10.10.2-0.40.40.3
Reaction time num false alarms0.00.00.10.1-0.3-0.1
Reaction time num false alarms AUC0.10.20.40.3-0.6-0.5
Reaction time trials correct on left1.83.53.91.8-1.9-2.0
Reaction time trials on left1.83.43.81.7-1.9-2.0
Reaction time mean0.30.50.6-0.80.70.6
Reaction time mean AUC0.50.80.9-0.90.90.8
Median of all reaction times0.81.21.5-1.21.11.0
Reaction time omissions0.30.40.6-0.80.50.5
Reaction time false alarm rate0.30.30.4-0.60.50.6
Reaction time premature initiation rate1.31.81.9-1.41.31.3
Reaction time premature initiations0.00.00.1-0.20.10.1
Std. dev. reaction times0.00.10.1-0.30.20.2
Reaction time trials completed1.83.43.81.7-1.9-2.0
Reaction time trials AUC1.73.33.81.7-1.8-1.9
Run reversals in cocaine runway, females0.10.10.10.3-0.2-0.3
Run reversals in cocaine runway, males0.00.00.0-0.2-0.0-0.1
Latency to leave start box in cocaine runway4.34.95.82.1-2.2-2.4
Latency to leave start box in cocaine runway, F5.66.47.52.3-2.5-2.7
Latency to leave start box in cocaine runway, M0.00.00.0-0.00.00.0
Std. dev. time between licks in bursts0.00.00.0-0.0-0.0-0.0
Total sessions with >9 infusions0.00.00.1-0.20.20.2
Short access day 1 total inactive lever presses0.30.40.8-0.90.30.5
Short access day 10 total inactive lever presses0.10.20.30.3-0.4-0.5
Short access day 1 total infusions0.60.90.9-1.00.90.9
Short access day 10 total infusions0.00.00.1-0.2-0.2-0.0
Short access total infusions0.00.00.0-0.2-0.00.0
Short access day 1 locomotion1.41.81.9-1.41.31.3
Short access day 10 total locomotion0.20.40.7-0.80.50.7
Short access total locomotion0.00.00.1-0.1-0.2-0.1
One hour access (0.3 mA shock)0.50.60.80.9-0.7-0.7
Compulsive drug intake1.72.03.2-0.81.81.5
One hour access (shock baseline)0.50.81.10.7-1.1-1.0
Social response proportion0.10.20.2-0.30.40.5
Social responses0.20.20.4-0.40.30.6
Social time0.20.30.50.3-0.7-0.4
Soleus weight0.00.00.0-0.10.00.1
Bone: stiffness0.00.10.10.2-0.3-0.2
Tibialis anterior weight1.55.05.62.4-2.2-2.2
Time to tail flick, vehicle, before self-admin0.40.50.80.5-0.9-0.6
Time to tail flick, vehicle, after self-admin0.00.00.00.10.10.1
Time to tail flick, test, before self-admin0.00.00.00.10.10.2
Time to tail flick, test, after self-admin0.20.20.50.3-0.7-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.40.50.4
Delta time to tail flick, test, before/after SA0.10.10.1-0.2-0.3-0.1
Tibia length0.82.12.41.6-1.5-1.3
Ambulatory time before self-admin1.42.02.51.1-1.6-1.6
Ambulatory time after self-admin0.40.40.50.6-0.7-0.7
Bone: tissue strength0.40.40.50.7-0.5-0.6
Total heroin consumption0.10.10.2-0.4-0.20.0
Bone: trabecular number6.010.010.8-3.33.03.2
Bone: trabecular spacing2.73.63.71.9-1.9-1.9
Bone: trabecular thickness0.10.20.2-0.40.40.4
Bone: trabecular tissue density0.30.50.7-0.50.90.7
Water consumed over 24 hours0.20.30.40.5-0.6-0.5
Number of responses in last shaping day0.50.60.7-0.60.80.8