Lpar6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Lpar6 0.08 0.05 6.9e-08 0.07 0.06 0.06 0.06 5.5e-08 3.0e-07 1.2e-07 1.8e-07
2 Brain gene expression Lpar6 0.07 0.05 2.9e-04 0.04 0.03 0.04 0.04 4.9e-05 5.7e-04 2.1e-04 2.3e-04
3 Eye gene expression Lpar6 0.48 0.24 6.5e-03 0.15 0.16 0.2 0.15 2.8e-03 1.6e-03 5.4e-04 2.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.71.1-1.01.10.3
Area under the delay curve0.30.40.8-0.90.50.3
BMI with tail0.20.71.90.21.40.5
BMI without tail0.91.85.1-0.32.3-0.5
Body weight0.41.84.3-2.10.1-1.0
Weight adjusted by age2.32.66.21.2-2.50.3
Bone surface0.40.61.3-1.10.70.4
Bone volume0.61.01.2-1.11.10.8
Breakpoint value in progressive ratio session0.20.30.50.0-0.50.7
Number of licking bursts0.60.70.8-0.80.9-0.9
Context. condit. distance diff. score2.83.49.70.63.1-0.3
Locomotion velocity, session 11.11.21.70.7-1.31.1
Locomotion distance, session 10.30.41.0-1.0-0.50.3
Locomotion velocity, session 20.40.51.1-0.7-1.0-0.2
Locomotion distance, session 20.81.22.4-1.5-0.80.7
Locomotion velocity, session 30.30.30.60.50.80.1
Locomotion distance, session 30.80.82.50.11.6-0.2
Stereotopy head waving bouts, day 31.11.32.71.1-1.70.4
Stereotopy head waving duration, day 31.01.22.30.7-1.50.9
Locomotion velocity, session 75.05.514.1-0.03.8-1.5
Locomotion distance, session 73.54.412.60.33.5-0.7
Stereotopy head waving bouts, day 70.70.82.0-0.6-1.4-0.3
Stereotopy head waving duration, day 71.01.33.70.0-1.9-0.1
Locomotion velocity, session 80.40.51.4-0.21.20.0
Locomotion distance, session 81.62.35.2-1.32.3-0.2
Degree of sensitization distance1.11.12.90.31.7-0.5
Degree of sensitization stereotypy0.60.60.9-0.8-1.0-0.6
Conditioned locomotion0.30.30.80.90.40.2
Cocaine response after cond. corrected1.71.94.82.2-0.21.0
Cocaine response after cond. not corrected0.60.71.51.20.30.6
Cocaine response before conditioning2.42.96.5-2.60.7-1.3
Saline control response0.91.22.8-1.70.2-0.8
Bone: connectivity density0.60.91.4-1.20.4-1.1
Bone: cortical apparent density0.71.02.81.7-0.1-0.2
Bone: cortical area0.30.40.9-0.21.00.6
Bone: cortical porosity1.11.23.4-1.8-0.4-0.5
Bone: cortical porosity0.80.92.6-1.60.0-0.1
Bone: cortical thickness0.30.40.6-0.80.7-0.5
Bone: cortical thickness0.30.30.8-0.10.9-0.3
Bone: cortical tissue density0.81.13.21.8-0.1-0.1
Condit. Reinf. active minus inactive responses1.92.13.6-1.1-1.9-1.3
Condit. Reinf. active-inactive response ratio1.21.32.51.2-1.6-0.0
Condit. Reinf. active responses3.13.85.5-2.3-1.4-2.0
Condit. Reinf. inactive responses4.45.212.1-3.50.2-1.9
Incentive salience index mean4.25.06.6-2.6-1.6-2.4
Condit. Reinf. lever presses5.77.613.1-3.6-0.7-3.1
Condit. Reinf. active minus inactive responses0.50.71.6-0.6-0.2-1.3
Condit. Reinf. active-inactive response ratio0.10.10.30.00.6-0.2
Condit. Reinf. active responses0.81.12.0-1.10.4-1.4
Condit. Reinf. inactive responses1.41.82.9-1.70.4-1.5
Condit. Reinf. lever presses1.31.84.0-2.0-0.0-1.1
Condit. Reinf. lever reinforcers received1.01.31.9-1.40.5-1.4
Conditioned reinforcement - actives0.80.81.31.21.00.2
Conditioned reinforcement - inactives1.61.82.5-1.61.1-1.3
Conditioned locomotion0.20.20.6-0.00.80.4
Patch foraging indifference point 0 sec4.16.612.5-3.50.2-2.7
Patch foraging indifference point AUC1.71.92.81.60.81.7
Delay disc. indifference point, 0s delay0.50.51.5-0.2-1.2-0.1
Delay disc. indifference point, 16s delay0.30.30.5-0.70.40.6
Delay disc. indifference point, 2s delay1.11.21.51.1-0.91.2
Delay disc. indifference point, 24s delay0.20.20.40.10.60.6
Delay disc. indifference point, 4s delay0.30.40.70.5-0.30.8
Delay disc. indifference point, 8s delay0.80.81.6-1.30.9-0.3
Indifference point function ln k1.41.93.0-1.7-0.3-1.6
Indifference point function log k1.41.93.0-1.7-0.3-1.6
Patch foraging total patch changes 0 sec4.16.512.6-3.50.1-2.6
Patch foraging total patch changes 12 sec1.11.43.5-1.90.2-0.8
Patch foraging total patch changes 18 sec0.70.81.1-1.10.9-0.8
Patch foraging total patch changes 24 sec1.51.84.5-2.10.3-0.9
Patch foraging total patch changes 6 sec1.62.43.2-1.71.1-1.8
Patch foraging time to switch 0 sec0.10.10.40.1-0.6-0.2
Patch foraging water rate 0 sec0.81.33.2-1.80.6-0.6
Patch foraging water rate 12 sec0.30.51.0-0.0-1.0-0.7
Patch foraging water rate 18 sec0.10.10.10.30.4-0.1
Patch foraging water rate 24 sec0.30.50.6-0.40.8-0.7
Patch foraging water rate 6 sec0.10.20.4-0.1-0.40.7
Seeking ratio, delayed vs. immediate footshock1.61.83.50.3-1.9-1.4
Distance traveled before self-admin1.21.32.20.6-1.21.5
Distance traveled after self-admin3.03.45.92.4-0.12.0
Extensor digitorum longus weight4.417.226.44.1-3.05.1
Bone: elastic displacement0.91.02.1-0.9-1.5-0.3
Bone: elastic work0.91.12.8-1.7-0.80.2
Bone: endosteal estimation0.30.61.50.20.61.2
Bone: endosteal perimeter0.20.51.00.6-0.11.0
Epididymis fat weight1.53.56.6-1.80.8-2.6
Delta time in closed arm before/after self-admin0.10.10.20.20.50.1
Delta time in open arm before/after self-admin0.10.10.3-0.20.5-0.1
Diff in mean of infusions in LGA sessions0.60.61.50.4-1.20.6
Delay discount exponential model param0.30.40.60.8-0.6-0.4
Extinction: sum of active levers before priming1.01.01.2-1.11.1-0.7
Active lever presses in extinction session 60.40.40.6-0.50.6-0.8
Bone: final force0.91.42.2-1.51.2-0.7
Bone: final moment0.71.22.6-1.60.7-0.7
Food consumed during 24 hour testing period0.30.30.6-0.80.60.1
Glucose1.72.54.80.72.21.5
Heart weight0.00.00.1-0.1-0.0-0.3
Delay discount hyperbolic model param0.20.20.50.4-0.3-0.7
Intermittent access intake day 1-15 change2.01.93.3-1.50.6-1.8
Intermittent access intake escalation1.51.52.2-1.30.6-1.5
Intermittent access intake escalation 20.40.40.9-0.30.2-1.0
Intermitt. access day 1 inactive lever presses1.31.42.6-1.0-0.6-1.6
Intermitt. access day 15 inactive lever presses1.21.32.1-1.4-0.0-1.3
Intermitt. access escalation Index0.40.40.90.4-0.21.0
Intermittent access day 1 total infusions1.51.82.7-1.61.6-0.5
Intermittent access day 15 total infusions2.02.33.2-1.81.2-1.5
Intermittent access terminal intake (last 3 days)1.21.31.6-1.21.3-0.9
Intermittent access total infusions2.22.53.1-1.81.7-1.2
Intermittent access day 1 locomotion2.62.74.7-2.21.3-1.4
Intermittent access day 15 total locomotion0.91.01.2-0.91.1-1.0
Intermittent access total locomotion1.92.13.4-1.81.2-1.2
Intermittent access standard deviation0.80.82.0-1.40.3-0.7
Left kidney weight1.33.66.6-2.60.5-2.0
Right kidney weight2.26.210.7-3.30.2-2.8
Cocaine induced anxiety1.61.85.3-0.2-2.30.4
Post-drug Anxiety1.21.31.9-0.4-1.4-1.4
Baseline Anxiety1.61.72.3-1.01.3-1.5
Tail length0.82.64.6-2.11.0-1.4
Length with tail0.72.63.9-2.0-1.4-1.4
Length without tail1.12.57.4-0.2-2.70.1
Times rat made contact with spout2.93.35.6-1.72.4-1.2
Lifetime Intake1.92.12.8-1.71.6-0.9
Liver weight, left0.71.03.10.0-1.7-0.3
Liver weight, right0.10.20.7-0.00.10.8
Locomotor activity2.43.99.3-0.9-3.01.3
Locomotor testing distance1.93.26.6-1.7-2.60.1
Locomotor testing rearing2.53.97.1-2.1-2.7-0.4
Locomotion in novel chamber0.91.12.0-1.40.90.6
Locomotion in novel chamber post-restriction0.50.60.90.60.71.0
Fecal boli incidents, locomotor time 10.80.91.5-1.20.51.0
Change in fecal boli incidents, locomotor task1.91.83.21.4-1.8-0.4
Time >=10cm from walls, locomotor time 10.50.51.0-1.0-0.1-0.8
Bouts of movement, locomotor time 10.60.71.21.1-0.60.7
Total resting periods, locomotor time 10.90.91.71.3-0.60.8
Rest time, locomotor task time 11.82.03.91.4-0.52.0
Distance moved, locomotor task time 11.31.43.6-0.7-0.0-1.9
Vertical activity count, locomotor time 10.40.41.20.1-1.10.1
Time >=10cm from walls, locomotor time 21.21.31.80.9-1.31.1
Bouts of movement, locomotor time 20.60.61.10.8-0.51.0
Total resting periods, locomotor time 20.50.51.20.6-0.21.1
Rest time, locomotor task time 20.81.01.90.21.01.4
Distance moved, locomotor task time 21.11.32.4-1.0-0.6-1.5
Vertical activity count, locomotor time 20.80.91.30.6-1.11.0
Light reinforcement 11.73.14.8-1.32.2-1.7
Light reinforcement 21.82.46.60.72.6-0.4
Bone: marrow area0.30.61.30.10.61.1
Bone: maximum diameter0.61.11.51.10.81.2
Bone: maximum force0.50.91.7-1.31.00.1
Bone: maximum moment0.50.82.2-1.50.50.1
Mean time between licks in bursts0.10.10.3-0.10.3-0.5
Mean num. licks in bursts0.30.40.9-0.40.90.3
Cd content in liver0.10.20.4-0.00.2-0.7
Co content in liver4.65.48.62.90.62.7
Cu content in liver1.11.31.71.3-1.20.9
Fe content in liver0.20.30.8-0.3-0.0-0.9
K content in liver0.70.71.7-0.31.3-0.6
Mg content in liver0.60.61.40.51.20.4
Mn content in liver0.91.02.00.71.40.7
Na content in liver1.61.73.5-1.2-1.90.2
Rb content in liver0.20.30.90.1-0.1-0.9
Se content in liver1.72.05.9-0.1-2.40.5
Sr content in liver0.20.10.20.3-0.40.5
Zn content in liver0.91.02.4-0.6-1.60.5
Bone: minimum diameter0.20.30.6-0.80.30.5
Time in familiar zone, hab. session 11.01.02.4-0.61.5-0.4
Time in novel zone, hab. session 13.43.34.62.1-1.81.4
Total zone transitions, hab. session 10.20.30.6-0.1-0.70.6
Total locomotion distance, hab. session 10.60.91.6-1.0-1.3-0.2
Locomotion velocity, hab. session 11.01.43.1-1.8-1.0-0.2
Time in familiar zone, hab. session 21.61.72.41.50.61.5
Time in novel zone, hab. session 20.40.40.5-0.7-0.7-0.6
Total zone transitions, hab. session 21.21.53.8-0.5-1.90.7
Total locomotion distance, hab. session 20.91.22.9-0.8-1.70.2
Locomotion velocity, hab. session 21.01.43.3-0.8-1.80.5
Novel to familiar place preference ratio1.81.93.4-1.8-0.3-1.5
Novelty place preference2.02.13.7-1.9-0.2-1.6
Time in novel zone, NPP test1.51.52.9-1.7-0.2-1.3
Total zone transitions, NPP test0.50.81.8-1.3-0.6-0.2
Total locomotion distance, NPP test1.21.74.3-2.1-0.2-0.9
Locomotion velocity, NPP test1.62.25.2-2.3-0.2-1.2
Intraocular pressure0.81.21.8-1.30.2-1.3
Delta distance traveled before/after self-admin1.81.94.32.10.61.0
Delta ambulatory time before/after self-admin0.91.02.11.50.40.8
Parametrial fat weight0.51.01.7-0.21.2-1.3
Pavlov. Cond. lever latency2.93.76.22.50.02.2
Pavlov. Cond. magazine entry latency0.81.01.5-1.10.5-1.2
Pavlov. Cond. change in total contacts1.81.93.6-1.9-0.6-1.3
Pavlov. Cond. index score2.43.15.4-2.30.3-1.9
Pavlov. Cond. latency score3.24.06.6-2.60.3-2.3
Pavlov. Cond. lever contacts2.93.45.9-2.40.0-2.1
Pavlov. Cond. magazine entry number0.30.30.60.8-0.40.5
Pavlov. Cond. intertrial magazine entries1.11.32.1-1.4-0.7-1.2
Pavlov. Cond. lever-magazine prob. diff.1.92.44.6-2.10.4-1.6
Pavlov. Cond. response bias0.60.71.2-1.10.1-1.0
Pavlov. Cond. lever latency0.50.61.61.30.50.2
Pavlov. Cond. magazine entry latency0.70.82.0-1.40.60.3
Pavlov. Cond. change in total contacts0.71.01.90.5-1.41.0
Pavlov. Cond. index score0.40.51.2-1.1-0.50.4
Pavlov. Cond. latency score0.50.61.4-1.2-0.60.2
Pavlov. Cond. lever contacts0.71.02.3-1.5-0.8-0.0
Pavlov. Cond. magazine entry number0.50.61.21.1-0.8-0.2
Pavlov. Cond. intertrial magazine entries3.14.04.4-1.82.1-2.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.7-0.9-0.40.5
Pavlov. Cond. response bias0.71.02.5-1.6-0.60.4
Time in closed arm before self-admin0.20.20.40.60.40.3
Time in closed arm after self-admin0.20.20.30.6-0.20.3
Time in open arm before self-admin0.40.40.80.5-0.50.9
Time in open arm after self-admin0.10.20.20.40.40.5
Bone: periosteal estimation0.30.71.10.20.91.1
Bone: periosteal perimeter0.20.30.50.30.50.7
Bone: post-yield work1.11.54.6-0.32.1-0.0
Progressive ratio test 1 active lever presses0.70.72.0-0.41.40.0
Progressive ratio test 1 breakpoint0.70.82.2-0.31.5-0.1
Progressive ratio test 1 inactive lever presses2.83.04.4-1.81.2-2.1
Progressive ratio test 2 active lever presses2.12.36.5-0.42.5-0.4
Progressive ratio test 2 breakpoint2.32.56.4-0.92.5-0.7
Progressive ratio test 2 inactive lever presses1.72.02.5-1.61.4-1.2
Incentive Sensitization - Responses2.02.05.4-0.62.3-0.6
Incentive Sensitization - Breakpoint2.32.35.5-0.92.4-0.8
Sum of active levers in priming session hrs 5-61.91.84.12.00.61.0
Progressive ratio0.60.70.90.71.00.8
Food seeking constrained by brief footshock4.05.09.23.0-0.42.3
Seeking ratio, punishment vs. effort0.60.81.41.2-0.90.4
Retroperitoneal fat weight0.31.02.5-0.50.3-1.6
Reaction time number correct1.21.83.92.00.21.2
Reaction time mean minus median1.41.84.4-1.0-2.1-0.1
Reaction time mean minus median AUC0.30.40.7-0.8-0.8-0.1
Reaction time num false alarms0.10.10.4-0.00.60.2
Reaction time num false alarms AUC0.20.31.0-0.11.00.0
Reaction time trials correct on left1.21.83.92.00.21.2
Reaction time trials on left1.11.63.71.90.21.1
Reaction time mean0.60.82.4-0.3-1.60.2
Reaction time mean AUC0.91.23.4-0.1-1.80.3
Median of all reaction times0.30.41.20.0-1.10.1
Reaction time omissions0.91.21.9-0.9-0.9-1.4
Reaction time false alarm rate0.50.81.0-1.01.0-0.5
Reaction time premature initiation rate0.60.81.01.0-1.0-0.6
Reaction time premature initiations1.11.64.12.0-0.80.0
Std. dev. reaction times1.01.44.1-0.5-2.00.0
Reaction time trials completed1.11.63.71.90.21.1
Reaction time trials AUC1.31.84.12.00.21.2
Run reversals in cocaine runway, females1.01.02.90.21.70.3
Run reversals in cocaine runway, males0.90.91.2-1.00.51.1
Latency to leave start box in cocaine runway1.61.72.71.2-1.71.0
Latency to leave start box in cocaine runway, F0.90.92.20.6-1.50.5
Latency to leave start box in cocaine runway, M0.10.10.20.20.10.5
Std. dev. time between licks in bursts1.92.23.1-1.6-1.0-1.8
Total sessions with >9 infusions0.40.40.8-0.30.9-0.5
Short access day 1 total inactive lever presses4.04.57.7-2.82.1-1.2
Short access day 10 total inactive lever presses0.70.71.4-0.80.4-1.2
Short access day 1 total infusions0.40.41.0-0.41.0-0.1
Short access day 10 total infusions1.41.63.8-1.91.0-0.1
Short access total infusions1.71.92.6-1.61.6-0.8
Short access day 1 locomotion0.30.30.4-0.7-0.6-0.2
Short access day 10 total locomotion0.30.40.7-0.80.4-0.5
Short access total locomotion1.41.52.6-1.60.1-1.4
One hour access (0.3 mA shock)0.60.71.3-1.10.9-0.2
Compulsive drug intake0.50.51.4-1.2-0.4-0.2
One hour access (shock baseline)0.30.30.60.20.70.5
Social response proportion1.71.95.32.30.10.5
Social responses0.40.51.01.00.0-0.7
Social time0.40.50.6-0.7-0.8-0.8
Soleus weight3.49.912.53.5-2.23.5
Bone: stiffness0.60.91.5-1.01.2-0.3
Tibialis anterior weight2.58.615.52.5-2.03.9
Time to tail flick, vehicle, before self-admin2.72.84.8-2.20.8-1.7
Time to tail flick, vehicle, after self-admin0.30.30.70.9-0.30.4
Time to tail flick, test, before self-admin0.50.50.8-0.80.90.2
Time to tail flick, test, after self-admin1.61.73.5-0.61.1-1.9
Delta time to tail flick, vehicle, before/after SA0.80.81.71.3-0.40.7
Delta time to tail flick, test, before/after SA0.80.71.10.70.8-1.0
Tibia length5.716.032.3-5.70.3-3.9
Ambulatory time before self-admin0.50.51.4-0.1-0.31.2
Ambulatory time after self-admin2.42.64.01.8-0.72.0
Bone: tissue strength0.20.20.4-0.6-0.2-0.5
Total heroin consumption0.50.51.1-0.0-0.71.0
Bone: trabecular number0.60.91.3-1.11.1-0.5
Bone: trabecular spacing0.91.21.51.2-1.20.8
Bone: trabecular thickness1.51.82.9-1.71.5-0.2
Bone: trabecular tissue density0.91.32.01.3-0.41.4
Water consumed over 24 hours0.20.30.4-0.60.50.3
Number of responses in last shaping day0.20.20.30.4-0.20.5