LOC134486367

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC134486367 0.12 0.05 0.0e+00 0.14 0.13 0.13 0.14 5.4e-20 1.8e-19 2.1e-19 2.5e-20
2 NAcc isoform ratio XR_010065198.1 0.07 0.04 3.6e-08 0.06 0.06 0.06 0.06 2.2e-09 6.1e-10 2.0e-09 9.8e-10
3 BLA alternative TSS XR_010065199.1 0.09 0.05 8.1e-04 0.03 0.05 0.04 0.03 1.2e-02 1.0e-03 2.5e-03 7.2e-03
4 NAcc alternative TSS XR_010065199.1 0.08 0.04 1.4e-08 0.06 0.06 0.07 0.05 5.2e-09 4.0e-09 3.5e-11 1.5e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.61.11.61.31.3-0.6-0.9
Area under the delay curve0.30.40.80.70.4-0.9-0.3
BMI with tail0.41.45.00.40.40.6-2.2
BMI without tail0.00.10.2-0.3-0.40.2-0.0
Body weight0.31.53.6-0.40.21.9-1.5
Weight adjusted by age0.40.61.11.00.9-0.7-0.3
Bone surface0.00.10.10.30.4-0.1-0.3
Bone volume0.10.20.40.50.60.2-0.5
Breakpoint value in progressive ratio session3.54.25.62.42.2-2.2-1.2
Number of licking bursts0.10.20.90.10.3-0.00.9
Context. condit. distance diff. score0.40.41.10.51.10.50.3
Locomotion velocity, session 10.50.51.80.50.0-0.2-1.3
Locomotion distance, session 10.10.10.30.50.3-0.2-0.1
Locomotion velocity, session 20.30.31.00.3-0.2-1.0-0.1
Locomotion distance, session 20.50.71.2-1.0-1.10.60.4
Locomotion velocity, session 30.50.61.21.10.8-0.6-0.5
Locomotion distance, session 30.20.30.60.40.3-0.80.4
Stereotopy head waving bouts, day 31.31.52.7-1.5-0.71.70.7
Stereotopy head waving duration, day 31.01.12.6-1.2-0.51.60.5
Locomotion velocity, session 70.50.61.2-0.6-1.1-0.20.8
Locomotion distance, session 70.30.40.7-0.7-0.80.40.6
Stereotopy head waving bouts, day 70.40.40.80.40.8-0.40.9
Stereotopy head waving duration, day 70.30.41.10.20.6-0.41.0
Locomotion velocity, session 80.10.10.40.0-0.20.00.6
Locomotion distance, session 80.20.30.70.40.80.60.2
Degree of sensitization distance0.30.30.8-0.30.10.90.5
Degree of sensitization stereotypy1.51.72.81.61.7-1.2-0.1
Conditioned locomotion0.30.31.00.00.4-0.31.0
Cocaine response after cond. corrected1.21.42.91.41.7-0.5-0.8
Cocaine response after cond. not corrected0.20.20.30.00.60.50.4
Cocaine response before conditioning3.54.25.4-2.3-1.91.82.1
Saline control response1.21.63.81.01.00.8-2.0
Bone: connectivity density1.11.72.61.41.6-0.8-1.1
Bone: cortical apparent density0.50.71.90.70.7-0.2-1.4
Bone: cortical area2.94.48.2-2.3-2.02.90.4
Bone: cortical porosity0.40.41.4-0.5-0.10.11.2
Bone: cortical porosity0.60.60.9-0.9-0.60.70.8
Bone: cortical thickness1.21.94.8-1.2-0.92.2-0.7
Bone: cortical thickness1.61.84.2-1.4-0.92.00.6
Bone: cortical tissue density0.60.81.90.80.8-0.3-1.4
Condit. Reinf. active minus inactive responses0.70.81.6-1.3-0.80.80.6
Condit. Reinf. active-inactive response ratio0.20.20.4-0.7-0.50.50.2
Condit. Reinf. active responses1.82.23.9-2.0-1.61.01.2
Condit. Reinf. inactive responses1.82.23.5-1.9-1.70.71.4
Incentive salience index mean0.70.81.7-1.3-0.90.70.4
Condit. Reinf. lever presses0.20.30.4-0.6-0.30.7-0.4
Condit. Reinf. active minus inactive responses2.63.47.0-2.0-1.72.6-0.0
Condit. Reinf. active-inactive response ratio1.31.62.7-1.3-1.41.60.2
Condit. Reinf. active responses2.94.08.5-2.2-1.72.9-0.2
Condit. Reinf. inactive responses0.70.92.6-1.0-0.31.6-0.2
Condit. Reinf. lever presses3.95.510.0-2.7-2.03.20.7
Condit. Reinf. lever reinforcers received2.53.57.4-1.9-1.62.7-0.4
Conditioned reinforcement - actives0.61.11.4-1.1-1.21.00.7
Conditioned reinforcement - inactives0.20.30.7-0.4-0.6-0.20.8
Conditioned locomotion0.40.51.3-0.4-0.61.1-0.2
Patch foraging indifference point 0 sec0.61.02.31.31.5-0.0-0.4
Patch foraging indifference point AUC1.92.74.9-1.5-1.9-0.52.2
Delay disc. indifference point, 0s delay0.40.41.4-0.3-0.30.4-1.2
Delay disc. indifference point, 16s delay0.40.51.20.30.2-1.10.8
Delay disc. indifference point, 2s delay0.60.61.3-0.2-0.9-0.7-1.1
Delay disc. indifference point, 24s delay0.91.01.80.80.7-1.31.1
Delay disc. indifference point, 4s delay1.71.74.31.20.7-0.8-2.1
Delay disc. indifference point, 8s delay0.20.30.50.70.4-0.70.1
Indifference point function ln k0.10.20.60.10.30.4-0.8
Indifference point function log k0.10.20.60.10.30.4-0.8
Patch foraging total patch changes 0 sec1.01.83.61.81.9-0.3-0.7
Patch foraging total patch changes 12 sec0.60.71.4-0.7-0.90.41.2
Patch foraging total patch changes 18 sec1.42.15.8-1.1-1.1-0.22.4
Patch foraging total patch changes 24 sec0.71.12.2-1.1-0.81.50.8
Patch foraging total patch changes 6 sec0.40.60.90.70.6-0.91.0
Patch foraging time to switch 0 sec0.50.91.81.01.4-0.1-1.0
Patch foraging water rate 0 sec0.71.42.0-1.4-1.31.11.0
Patch foraging water rate 12 sec1.12.23.8-1.7-2.01.4-0.1
Patch foraging water rate 18 sec1.11.62.8-0.8-1.11.7-1.4
Patch foraging water rate 24 sec0.10.10.3-0.1-0.40.5-0.1
Patch foraging water rate 6 sec1.21.82.5-1.6-1.61.50.1
Seeking ratio, delayed vs. immediate footshock0.20.30.5-0.7-0.50.60.2
Distance traveled before self-admin0.81.13.1-0.9-0.51.8-0.5
Distance traveled after self-admin2.02.53.6-1.9-1.91.50.6
Extensor digitorum longus weight0.52.13.7-1.6-1.91.5-0.2
Bone: elastic displacement0.40.51.60.40.20.3-1.2
Bone: elastic work1.51.95.60.0-0.11.5-2.4
Bone: endosteal estimation1.22.74.0-1.7-1.70.92.0
Bone: endosteal perimeter2.34.86.9-2.6-2.61.71.7
Epididymis fat weight6.421.934.95.95.3-4.2-2.6
Delta time in closed arm before/after self-admin0.30.30.50.60.4-0.1-0.7
Delta time in open arm before/after self-admin0.50.51.3-0.7-0.31.1-0.2
Diff in mean of infusions in LGA sessions9.811.916.14.03.9-3.4-2.2
Delay discount exponential model param0.40.51.0-0.8-0.41.00.2
Extinction: sum of active levers before priming0.30.41.20.30.30.3-1.1
Active lever presses in extinction session 60.90.83.10.40.30.1-1.8
Bone: final force3.75.89.1-2.9-3.01.91.6
Bone: final moment3.96.310.1-3.0-3.22.11.5
Food consumed during 24 hour testing period0.60.91.9-1.0-0.71.40.1
Glucose0.91.33.2-1.3-1.80.80.1
Heart weight0.10.10.2-0.4-0.1-0.30.4
Delay discount hyperbolic model param0.50.51.2-0.8-0.41.10.5
Intermittent access intake day 1-15 change0.91.84.3-1.5-2.10.8-0.2
Intermittent access intake escalation0.61.23.0-1.2-1.70.4-0.1
Intermittent access intake escalation 21.01.12.6-1.2-1.60.7-0.3
Intermitt. access day 1 inactive lever presses0.00.10.1-0.10.4-0.2-0.3
Intermitt. access day 15 inactive lever presses0.20.50.6-0.7-0.60.80.6
Intermitt. access escalation Index0.10.10.50.20.70.0-0.1
Intermittent access day 1 total infusions0.20.31.10.10.2-0.31.0
Intermittent access day 15 total infusions0.50.71.2-0.8-1.1-0.21.0
Intermittent access terminal intake (last 3 days)0.40.61.1-0.8-1.00.40.6
Intermittent access total infusions0.30.31.0-0.3-0.4-0.01.0
Intermittent access day 1 locomotion0.60.71.91.01.40.00.2
Intermittent access day 15 total locomotion0.30.50.8-0.5-0.80.9-0.6
Intermittent access total locomotion0.10.20.6-0.0-0.10.8-0.2
Intermittent access standard deviation1.32.85.8-2.0-2.41.10.4
Left kidney weight0.62.64.7-1.9-2.21.40.2
Right kidney weight1.25.58.6-2.7-2.92.4-0.1
Cocaine induced anxiety1.92.73.82.01.8-0.6-1.8
Post-drug Anxiety0.10.10.20.00.20.40.5
Baseline Anxiety2.93.35.6-2.1-1.41.12.4
Tail length1.03.87.8-2.0-1.61.02.8
Length with tail0.41.62.6-1.4-0.71.61.2
Length without tail0.51.54.0-1.0-0.42.0-1.0
Times rat made contact with spout0.20.20.30.60.40.2-0.5
Lifetime Intake0.10.20.5-0.3-0.3-0.10.7
Liver weight, left0.20.31.2-0.1-0.01.1-0.3
Liver weight, right0.61.11.8-1.1-1.01.3-0.5
Locomotor activity1.32.12.9-1.7-1.61.7-0.0
Locomotor testing distance2.23.95.4-2.3-2.22.3-0.1
Locomotor testing rearing4.38.711.6-3.4-3.43.40.3
Locomotion in novel chamber0.00.10.10.10.3-0.20.3
Locomotion in novel chamber post-restriction0.91.42.40.31.21.3-1.5
Fecal boli incidents, locomotor time 11.31.94.70.31.0-1.32.2
Change in fecal boli incidents, locomotor task0.40.40.7-0.7-0.80.8-0.1
Time >=10cm from walls, locomotor time 10.40.50.8-0.9-0.40.70.7
Bouts of movement, locomotor time 15.86.613.23.13.6-1.8-0.4
Total resting periods, locomotor time 16.06.712.83.23.6-1.9-0.5
Rest time, locomotor task time 12.93.77.42.02.7-1.51.1
Distance moved, locomotor task time 12.84.25.9-1.8-2.42.0-1.9
Vertical activity count, locomotor time 10.71.73.1-0.7-1.41.0-1.8
Time >=10cm from walls, locomotor time 21.72.54.1-2.0-1.71.60.6
Bouts of movement, locomotor time 21.11.84.01.52.0-1.00.1
Total resting periods, locomotor time 21.93.36.72.12.6-1.5-0.0
Rest time, locomotor task time 21.62.14.91.52.2-0.70.9
Distance moved, locomotor task time 23.74.46.6-1.7-2.02.6-2.1
Vertical activity count, locomotor time 20.81.03.0-0.3-0.90.4-1.7
Light reinforcement 10.10.41.1-0.1-0.10.6-1.0
Light reinforcement 20.20.30.50.70.6-0.2-0.6
Bone: marrow area1.12.43.8-1.6-1.70.81.9
Bone: maximum diameter1.73.25.2-2.0-1.62.31.1
Bone: maximum force3.15.47.7-2.7-2.82.40.9
Bone: maximum moment3.56.19.1-2.8-3.02.60.8
Mean time between licks in bursts1.02.44.1-1.7-1.62.0-0.4
Mean num. licks in bursts0.30.52.10.2-0.00.2-1.4
Cd content in liver0.30.40.80.30.3-0.90.7
Co content in liver1.11.32.1-1.5-1.01.30.5
Cu content in liver0.70.81.4-0.4-0.8-1.11.2
Fe content in liver1.51.82.31.41.2-1.5-1.3
K content in liver0.40.30.6-0.5-0.80.20.6
Mg content in liver0.50.50.8-0.6-0.90.20.9
Mn content in liver1.21.42.3-1.5-1.50.90.3
Na content in liver0.91.02.1-1.0-0.91.4-0.3
Rb content in liver1.82.13.0-1.7-1.50.61.7
Se content in liver0.20.20.60.40.8-0.40.2
Sr content in liver0.60.50.9-0.9-0.80.8-0.2
Zn content in liver0.20.20.40.20.60.60.5
Bone: minimum diameter0.81.42.6-1.3-1.21.60.1
Time in familiar zone, hab. session 12.01.95.4-1.1-1.0-0.32.3
Time in novel zone, hab. session 12.52.57.81.20.9-0.0-2.8
Total zone transitions, hab. session 11.52.06.1-1.1-0.72.5-0.6
Total locomotion distance, hab. session 11.92.75.0-1.7-1.72.2-0.4
Locomotion velocity, hab. session 11.21.73.6-1.3-1.31.9-0.2
Time in familiar zone, hab. session 23.53.76.52.22.6-0.0-1.8
Time in novel zone, hab. session 22.32.33.6-1.7-1.9-0.21.7
Total zone transitions, hab. session 20.40.51.6-0.4-0.01.3-0.5
Total locomotion distance, hab. session 20.20.30.90.30.20.2-1.0
Locomotion velocity, hab. session 20.20.31.20.20.00.2-1.1
Novel to familiar place preference ratio0.20.30.50.30.70.6-0.2
Novelty place preference0.30.40.80.60.90.3-0.4
Time in novel zone, NPP test0.30.40.90.60.90.4-0.3
Total zone transitions, NPP test0.10.20.50.00.60.70.0
Total locomotion distance, NPP test0.30.40.8-0.6-0.50.9-0.2
Locomotion velocity, NPP test0.50.71.0-0.9-0.81.0-0.2
Intraocular pressure0.30.51.3-0.6-0.51.10.2
Delta distance traveled before/after self-admin0.50.51.0-0.4-1.0-0.70.4
Delta ambulatory time before/after self-admin1.41.73.9-1.5-2.00.20.8
Parametrial fat weight2.35.58.83.02.1-1.7-2.4
Pavlov. Cond. lever latency0.20.30.60.60.2-0.80.2
Pavlov. Cond. magazine entry latency0.20.30.8-0.3-0.1-0.40.9
Pavlov. Cond. change in total contacts0.30.30.4-0.6-0.7-0.40.2
Pavlov. Cond. index score0.30.40.9-0.9-0.60.40.5
Pavlov. Cond. latency score0.40.51.0-1.0-0.60.60.5
Pavlov. Cond. lever contacts0.10.20.4-0.40.10.6-0.4
Pavlov. Cond. magazine entry number0.40.50.80.50.60.9-0.7
Pavlov. Cond. intertrial magazine entries1.72.12.9-1.7-1.41.41.2
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.8-0.40.30.3
Pavlov. Cond. response bias0.20.30.5-0.4-0.4-0.70.5
Pavlov. Cond. lever latency1.72.34.21.71.3-2.1-0.6
Pavlov. Cond. magazine entry latency0.30.40.70.30.80.00.9
Pavlov. Cond. change in total contacts0.50.81.2-1.0-0.90.61.1
Pavlov. Cond. index score0.30.40.8-0.5-0.10.90.7
Pavlov. Cond. latency score0.10.20.4-0.20.20.50.6
Pavlov. Cond. lever contacts1.62.23.9-1.7-1.22.00.7
Pavlov. Cond. magazine entry number0.81.01.8-1.0-1.30.8-0.6
Pavlov. Cond. intertrial magazine entries1.32.03.8-1.5-1.91.2-0.5
Pavlov. Cond. lever-magazine prob. diff.0.20.20.5-0.4-0.10.70.6
Pavlov. Cond. response bias1.21.63.3-1.3-0.91.80.7
Time in closed arm before self-admin0.10.20.5-0.3-0.0-0.10.7
Time in closed arm after self-admin0.00.00.0-0.1-0.10.0-0.0
Time in open arm before self-admin2.42.74.21.81.7-2.1-0.4
Time in open arm after self-admin0.20.20.60.40.80.2-0.1
Bone: periosteal estimation2.24.76.0-2.4-2.32.31.5
Bone: periosteal perimeter3.15.37.6-2.7-2.62.51.1
Bone: post-yield work0.91.31.7-1.2-1.11.30.8
Progressive ratio test 1 active lever presses0.40.40.7-0.8-0.60.70.6
Progressive ratio test 1 breakpoint0.30.40.6-0.8-0.50.60.6
Progressive ratio test 1 inactive lever presses0.50.71.9-0.7-0.31.4-0.4
Progressive ratio test 2 active lever presses0.60.72.0-0.7-0.50.01.4
Progressive ratio test 2 breakpoint0.60.72.0-0.6-0.50.11.4
Progressive ratio test 2 inactive lever presses1.32.15.4-1.4-1.10.22.3
Incentive Sensitization - Responses0.50.72.5-0.6-0.40.11.6
Incentive Sensitization - Breakpoint0.60.82.5-0.6-0.40.21.6
Sum of active levers in priming session hrs 5-61.41.33.51.10.8-1.9-0.0
Progressive ratio0.10.20.40.30.70.50.1
Food seeking constrained by brief footshock0.70.91.91.00.6-1.40.5
Seeking ratio, punishment vs. effort0.10.20.60.1-0.3-0.8-0.3
Retroperitoneal fat weight2.711.721.83.83.1-1.1-4.7
Reaction time number correct1.12.22.6-1.1-1.51.6-1.6
Reaction time mean minus median0.82.12.81.61.4-1.71.0
Reaction time mean minus median AUC1.23.15.22.31.8-2.00.1
Reaction time num false alarms5.27.311.5-3.1-3.42.31.7
Reaction time num false alarms AUC5.18.012.9-3.3-3.62.12.1
Reaction time trials correct on left1.12.22.6-1.1-1.51.6-1.6
Reaction time trials on left1.12.12.4-1.1-1.61.6-1.6
Reaction time mean3.55.69.32.62.3-3.01.1
Reaction time mean AUC3.86.19.22.82.6-3.00.9
Median of all reaction times4.05.710.42.62.2-3.20.9
Reaction time omissions0.40.61.30.70.3-0.91.1
Reaction time false alarm rate3.24.46.3-2.2-2.31.12.5
Reaction time premature initiation rate0.10.10.20.10.40.20.4
Reaction time premature initiations0.30.51.2-0.5-0.51.1-0.5
Std. dev. reaction times1.42.54.01.51.2-2.01.5
Reaction time trials completed1.12.12.4-1.1-1.61.6-1.6
Reaction time trials AUC1.32.53.1-1.3-1.81.7-1.6
Run reversals in cocaine runway, females0.40.40.9-0.1-0.00.9-0.9
Run reversals in cocaine runway, males1.31.32.81.10.7-0.8-1.7
Latency to leave start box in cocaine runway0.20.20.40.40.6-0.0-0.5
Latency to leave start box in cocaine runway, F0.10.10.20.10.50.5-0.3
Latency to leave start box in cocaine runway, M0.80.81.21.10.9-0.8-0.6
Std. dev. time between licks in bursts1.11.52.0-1.4-1.41.20.7
Total sessions with >9 infusions0.10.10.20.30.50.30.3
Short access day 1 total inactive lever presses0.10.10.40.0-0.10.1-0.6
Short access day 10 total inactive lever presses0.00.10.1-0.1-0.2-0.30.3
Short access day 1 total infusions0.30.40.80.90.7-0.5-0.5
Short access day 10 total infusions0.30.41.2-0.6-0.21.10.0
Short access total infusions0.10.20.20.50.4-0.5-0.1
Short access day 1 locomotion0.10.20.30.40.50.5-0.2
Short access day 10 total locomotion0.10.20.30.20.50.6-0.0
Short access total locomotion0.20.30.80.00.30.90.3
One hour access (0.3 mA shock)2.73.24.7-1.8-1.61.52.2
Compulsive drug intake0.30.41.10.50.4-1.00.1
One hour access (shock baseline)0.71.11.9-1.0-0.71.40.9
Social response proportion1.61.83.51.41.0-1.90.9
Social responses2.02.53.5-1.7-1.90.61.8
Social time1.01.44.1-0.7-0.9-0.32.0
Soleus weight0.30.81.3-0.8-1.11.1-0.6
Bone: stiffness4.06.59.8-3.0-3.11.91.9
Tibialis anterior weight0.10.30.50.40.4-0.70.6
Time to tail flick, vehicle, before self-admin0.60.61.8-0.7-0.30.21.4
Time to tail flick, vehicle, after self-admin2.22.95.11.91.6-2.3-0.2
Time to tail flick, test, before self-admin0.30.40.70.80.0-0.3-0.8
Time to tail flick, test, after self-admin0.10.10.30.2-0.10.1-0.5
Delta time to tail flick, vehicle, before/after SA1.21.12.11.20.8-1.4-0.6
Delta time to tail flick, test, before/after SA0.10.10.30.20.5-0.40.2
Tibia length2.56.915.4-3.0-1.83.90.5
Ambulatory time before self-admin0.81.23.7-0.9-0.41.9-0.1
Ambulatory time after self-admin1.92.33.6-1.7-1.91.31.0
Bone: tissue strength0.80.81.3-0.9-1.11.0-0.4
Total heroin consumption1.01.21.81.01.2-1.3-0.8
Bone: trabecular number1.11.83.41.51.9-0.7-1.1
Bone: trabecular spacing0.91.22.0-1.1-1.21.40.1
Bone: trabecular thickness0.10.10.20.40.4-0.3-0.1
Bone: trabecular tissue density0.20.30.6-0.6-0.80.4-0.1
Water consumed over 24 hours1.31.73.5-1.4-0.91.90.8
Number of responses in last shaping day0.80.81.21.11.1-1.0-0.0