LOC134486165

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134486165 0.28 0.1 0.0e+00 0.12 0.11 0.09 0.11 1.1e-12 8.9e-12 4.3e-10 4.3e-12
2 PL gene expression LOC134486165 0.03 0.02 5.4e-03 0.02 0.01 0.02 0.02 5.2e-03 8.8e-03 3.3e-03 4.7e-03
3 RMTg gene expression LOC134486165 0.2 0.11 8.5e-03 0.09 0.01 -0.01 0.02 2.7e-03 1.7e-01 6.2e-01 1.1e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.92.9-1.21.2-1.7
Area under the delay curve0.50.71.90.5-1.4-0.2
BMI with tail6.422.233.4-5.84.73.3
BMI without tail2.513.517.1-4.13.03.8
Body weight9.943.363.5-8.07.82.3
Weight adjusted by age0.20.61.2-0.20.81.1
Bone surface0.20.30.5-0.70.5-0.4
Bone volume0.51.01.3-0.90.9-1.1
Breakpoint value in progressive ratio session0.30.51.40.1-0.41.2
Number of licking bursts0.41.21.2-1.11.1-1.1
Context. condit. distance diff. score0.20.20.40.3-0.7-0.2
Locomotion velocity, session 11.71.94.41.1-2.1-0.3
Locomotion distance, session 12.32.95.51.5-2.3-0.9
Locomotion velocity, session 21.72.13.81.5-1.9-0.3
Locomotion distance, session 23.75.211.12.1-3.3-0.5
Locomotion velocity, session 31.31.52.20.7-1.5-1.3
Locomotion distance, session 30.40.50.70.2-0.9-0.8
Stereotopy head waving bouts, day 31.11.31.8-1.21.4-0.8
Stereotopy head waving duration, day 30.20.20.4-0.50.6-0.0
Locomotion velocity, session 70.90.91.41.1-0.5-1.2
Locomotion distance, session 70.50.71.7-0.0-0.6-1.3
Stereotopy head waving bouts, day 70.40.50.6-0.80.70.6
Stereotopy head waving duration, day 70.10.20.2-0.40.4-0.3
Locomotion velocity, session 81.41.63.21.3-1.8-0.1
Locomotion distance, session 82.53.68.51.4-2.9-0.6
Degree of sensitization distance0.10.10.2-0.30.4-0.1
Degree of sensitization stereotypy0.40.51.4-0.2-0.01.2
Conditioned locomotion2.63.13.7-1.71.6-1.9
Cocaine response after cond. corrected0.50.81.30.8-0.6-1.1
Cocaine response after cond. not corrected0.91.33.60.5-0.1-1.9
Cocaine response before conditioning0.70.81.4-0.50.9-1.2
Saline control response0.00.00.1-0.30.1-0.1
Bone: connectivity density0.81.32.8-0.80.7-1.7
Bone: cortical apparent density0.00.10.1-0.20.3-0.3
Bone: cortical area2.84.66.0-2.22.4-1.7
Bone: cortical porosity1.82.03.4-1.81.4-0.8
Bone: cortical porosity2.22.44.2-2.11.6-0.7
Bone: cortical thickness5.18.510.7-2.93.3-2.5
Bone: cortical thickness2.02.52.6-1.61.5-1.6
Bone: cortical tissue density0.00.00.00.00.2-0.2
Condit. Reinf. active minus inactive responses1.01.11.6-1.31.3-0.4
Condit. Reinf. active-inactive response ratio0.50.51.0-0.61.0-0.3
Condit. Reinf. active responses0.10.20.3-0.50.40.3
Condit. Reinf. inactive responses0.60.81.20.4-1.01.1
Incentive salience index mean0.00.10.1-0.20.3-0.0
Condit. Reinf. lever presses0.81.21.41.1-0.91.2
Condit. Reinf. active minus inactive responses0.00.00.0-0.20.2-0.0
Condit. Reinf. active-inactive response ratio0.10.10.20.2-0.20.5
Condit. Reinf. active responses0.10.20.5-0.0-0.10.7
Condit. Reinf. inactive responses0.10.20.4-0.10.40.7
Condit. Reinf. lever presses1.11.63.50.5-1.01.9
Condit. Reinf. lever reinforcers received0.20.30.80.3-0.40.9
Conditioned reinforcement - actives0.51.93.00.1-1.7-1.6
Conditioned reinforcement - inactives0.20.61.50.2-0.5-1.2
Conditioned locomotion1.52.23.41.2-1.8-1.4
Patch foraging indifference point 0 sec0.20.51.31.2-0.40.2
Patch foraging indifference point AUC1.02.55.82.4-1.3-0.2
Delay disc. indifference point, 0s delay0.20.20.5-0.0-0.70.3
Delay disc. indifference point, 16s delay0.50.71.00.8-1.0-0.6
Delay disc. indifference point, 2s delay0.50.61.3-0.0-1.20.7
Delay disc. indifference point, 24s delay0.50.92.1-0.1-0.7-1.5
Delay disc. indifference point, 4s delay0.10.10.10.2-0.20.4
Delay disc. indifference point, 8s delay0.60.92.40.4-1.6-0.4
Indifference point function ln k0.72.04.9-2.21.0-0.4
Indifference point function log k0.72.04.9-2.21.0-0.4
Patch foraging total patch changes 0 sec0.41.12.51.6-0.80.4
Patch foraging total patch changes 12 sec0.60.81.81.3-0.40.7
Patch foraging total patch changes 18 sec2.04.610.43.2-1.70.7
Patch foraging total patch changes 24 sec0.82.86.42.5-1.30.7
Patch foraging total patch changes 6 sec0.81.43.61.9-0.40.6
Patch foraging time to switch 0 sec0.72.64.4-2.11.80.3
Patch foraging water rate 0 sec1.34.78.72.9-2.30.3
Patch foraging water rate 12 sec0.51.92.81.5-1.7-0.8
Patch foraging water rate 18 sec0.91.93.90.7-1.2-2.0
Patch foraging water rate 24 sec0.60.91.70.8-1.3-0.7
Patch foraging water rate 6 sec0.60.92.40.60.0-1.6
Seeking ratio, delayed vs. immediate footshock0.60.92.0-1.40.7-0.5
Distance traveled before self-admin1.73.78.91.2-0.83.0
Distance traveled after self-admin0.30.51.01.0-0.4-0.5
Extensor digitorum longus weight0.10.61.2-1.10.40.6
Bone: elastic displacement0.10.10.4-0.10.6-0.2
Bone: elastic work1.72.23.5-1.91.70.5
Bone: endosteal estimation0.40.92.0-0.80.21.4
Bone: endosteal perimeter0.10.10.20.1-0.40.5
Epididymis fat weight4.924.738.0-6.25.72.0
Delta time in closed arm before/after self-admin0.20.10.30.6-0.10.3
Delta time in open arm before/after self-admin1.41.72.7-1.51.70.4
Diff in mean of infusions in LGA sessions1.01.73.80.8-0.91.9
Delay discount exponential model param0.50.71.7-0.51.30.4
Extinction: sum of active levers before priming0.81.11.80.9-0.81.4
Active lever presses in extinction session 60.90.91.5-1.20.9-0.6
Bone: final force1.93.04.6-2.11.9-0.9
Bone: final moment2.13.55.3-2.32.0-1.1
Food consumed during 24 hour testing period2.14.14.7-2.22.0-1.9
Glucose0.71.01.7-0.81.30.9
Heart weight1.42.35.0-2.21.30.2
Delay discount hyperbolic model param0.30.41.1-0.31.00.2
Intermittent access intake day 1-15 change0.10.81.2-0.1-1.11.1
Intermittent access intake escalation0.10.81.4-0.3-1.20.9
Intermittent access intake escalation 20.50.91.7-0.7-0.71.3
Intermitt. access day 1 inactive lever presses0.11.54.3-0.00.52.1
Intermitt. access day 15 inactive lever presses0.20.91.5-1.11.2-0.2
Intermitt. access escalation Index0.10.41.1-0.41.1-0.3
Intermittent access day 1 total infusions0.61.93.5-1.40.7-1.9
Intermittent access day 15 total infusions0.61.52.5-1.60.2-1.4
Intermittent access terminal intake (last 3 days)0.71.32.8-1.70.6-0.8
Intermittent access total infusions1.61.92.7-1.50.8-1.6
Intermittent access day 1 locomotion0.71.33.2-0.5-0.6-1.8
Intermittent access day 15 total locomotion0.41.74.2-0.90.1-2.0
Intermittent access total locomotion0.91.12.50.1-0.9-1.6
Intermittent access standard deviation0.10.41.10.4-1.1-0.1
Left kidney weight0.86.811.3-3.43.00.2
Right kidney weight0.53.77.3-2.72.00.0
Cocaine induced anxiety0.20.40.90.6-0.9-0.1
Post-drug Anxiety0.30.30.7-0.30.50.8
Baseline Anxiety1.42.43.5-0.81.91.8
Tail length0.63.04.9-2.02.2-0.3
Length with tail2.711.819.5-4.04.4-0.0
Length without tail2.915.222.6-4.84.7-1.0
Times rat made contact with spout0.50.61.70.1-0.11.3
Lifetime Intake0.81.02.1-1.00.4-1.4
Liver weight, left0.91.62.2-1.11.21.5
Liver weight, right1.83.14.9-2.02.20.6
Locomotor activity1.11.83.80.2-1.22.0
Locomotor testing distance0.61.42.51.0-1.60.9
Locomotor testing rearing0.41.41.71.3-1.21.0
Locomotion in novel chamber0.40.51.1-0.10.6-1.0
Locomotion in novel chamber post-restriction0.20.71.50.80.0-1.2
Fecal boli incidents, locomotor time 10.30.71.60.7-1.3-0.0
Change in fecal boli incidents, locomotor task1.51.62.9-0.51.7-1.3
Time >=10cm from walls, locomotor time 10.10.10.2-0.40.40.2
Bouts of movement, locomotor time 10.30.41.00.4-1.0-0.5
Total resting periods, locomotor time 10.50.51.10.6-1.0-0.4
Rest time, locomotor task time 10.00.10.2-0.1-0.40.0
Distance moved, locomotor task time 10.10.41.10.20.2-1.1
Vertical activity count, locomotor time 10.10.91.1-1.01.0-0.8
Time >=10cm from walls, locomotor time 21.02.84.6-2.11.90.6
Bouts of movement, locomotor time 20.72.33.01.2-1.51.7
Total resting periods, locomotor time 20.62.64.31.2-1.52.1
Rest time, locomotor task time 20.50.81.10.6-1.11.0
Distance moved, locomotor task time 20.60.82.20.20.4-1.5
Vertical activity count, locomotor time 20.20.51.2-0.50.4-1.1
Light reinforcement 10.10.51.00.5-1.0-0.4
Light reinforcement 20.10.30.60.4-0.8-0.4
Bone: marrow area0.30.81.8-0.80.21.4
Bone: maximum diameter0.40.81.1-1.01.0-0.5
Bone: maximum force1.63.15.0-2.21.8-0.9
Bone: maximum moment1.93.76.0-2.52.0-1.0
Mean time between licks in bursts0.85.08.1-1.02.9-2.4
Mean num. licks in bursts0.30.91.70.8-0.61.3
Cd content in liver0.60.71.2-0.61.1-0.7
Co content in liver2.22.65.5-0.21.5-2.4
Cu content in liver0.10.20.30.30.4-0.5
Fe content in liver1.62.03.2-1.81.6-0.3
K content in liver2.42.43.41.9-1.51.2
Mg content in liver0.10.10.30.10.40.5
Mn content in liver1.41.53.41.8-1.1-0.1
Na content in liver0.30.40.50.7-0.70.5
Rb content in liver0.80.91.2-0.91.10.8
Se content in liver2.42.94.8-1.92.20.1
Sr content in liver1.00.91.61.2-0.8-0.6
Zn content in liver1.82.12.2-1.41.5-1.4
Bone: minimum diameter0.91.72.7-1.71.5-0.5
Time in familiar zone, hab. session 10.30.30.60.40.8-0.5
Time in novel zone, hab. session 10.70.71.60.5-0.61.3
Total zone transitions, hab. session 10.20.30.60.2-0.4-0.8
Total locomotion distance, hab. session 10.50.71.20.9-1.1-0.1
Locomotion velocity, hab. session 10.40.50.90.5-0.9-0.6
Time in familiar zone, hab. session 20.40.41.20.3-1.1-0.1
Time in novel zone, hab. session 20.30.30.6-0.20.80.5
Total zone transitions, hab. session 20.20.30.70.2-0.90.1
Total locomotion distance, hab. session 21.92.55.11.4-2.30.7
Locomotion velocity, hab. session 21.92.54.91.6-2.20.2
Novel to familiar place preference ratio0.30.30.7-0.90.30.4
Novelty place preference0.40.51.1-1.10.60.2
Time in novel zone, NPP test0.50.61.2-1.10.70.5
Total zone transitions, NPP test1.01.52.41.4-1.60.4
Total locomotion distance, NPP test3.04.28.22.0-2.90.6
Locomotion velocity, NPP test2.73.97.42.1-2.70.0
Intraocular pressure0.71.22.3-0.70.8-1.5
Delta distance traveled before/after self-admin2.42.67.70.3-0.0-2.8
Delta ambulatory time before/after self-admin1.52.57.50.20.1-2.7
Parametrial fat weight10.224.029.4-5.45.04.2
Pavlov. Cond. lever latency1.01.32.7-1.71.0-0.5
Pavlov. Cond. magazine entry latency0.81.01.5-1.10.71.2
Pavlov. Cond. change in total contacts0.30.30.70.5-0.00.8
Pavlov. Cond. index score0.10.20.40.20.20.7
Pavlov. Cond. latency score0.10.20.40.6-0.10.4
Pavlov. Cond. lever contacts0.70.81.41.2-0.60.8
Pavlov. Cond. magazine entry number0.70.91.80.7-0.7-1.3
Pavlov. Cond. intertrial magazine entries0.30.40.50.5-0.7-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.90.1-0.01.0
Pavlov. Cond. response bias0.50.61.2-0.50.61.1
Pavlov. Cond. lever latency0.71.02.00.8-0.6-1.4
Pavlov. Cond. magazine entry latency0.10.10.3-0.10.10.5
Pavlov. Cond. change in total contacts0.41.02.9-0.20.41.7
Pavlov. Cond. index score0.50.71.5-0.60.71.2
Pavlov. Cond. latency score0.30.51.0-0.50.61.0
Pavlov. Cond. lever contacts0.71.02.2-0.80.51.5
Pavlov. Cond. magazine entry number0.20.30.30.5-0.6-0.5
Pavlov. Cond. intertrial magazine entries0.10.10.40.1-0.6-0.1
Pavlov. Cond. lever-magazine prob. diff.0.61.01.8-0.70.81.3
Pavlov. Cond. response bias0.70.91.6-0.80.71.3
Time in closed arm before self-admin0.50.81.6-0.70.7-1.2
Time in closed arm after self-admin0.80.92.60.00.4-1.6
Time in open arm before self-admin0.20.30.30.6-0.50.5
Time in open arm after self-admin0.60.61.5-0.30.51.2
Bone: periosteal estimation0.71.73.3-1.81.3-0.0
Bone: periosteal perimeter0.20.40.6-0.40.6-0.8
Bone: post-yield work0.71.22.3-1.50.8-0.8
Progressive ratio test 1 active lever presses0.00.10.1-0.2-0.3-0.3
Progressive ratio test 1 breakpoint0.00.10.1-0.3-0.2-0.3
Progressive ratio test 1 inactive lever presses0.61.62.60.7-1.31.6
Progressive ratio test 2 active lever presses0.10.20.6-0.2-0.80.0
Progressive ratio test 2 breakpoint0.20.20.6-0.2-0.8-0.1
Progressive ratio test 2 inactive lever presses0.00.10.2-0.4-0.2-0.1
Incentive Sensitization - Responses0.10.10.30.3-0.60.2
Incentive Sensitization - Breakpoint0.10.20.40.4-0.70.2
Sum of active levers in priming session hrs 5-60.10.10.20.4-0.10.4
Progressive ratio0.20.51.3-0.20.3-1.1
Food seeking constrained by brief footshock3.13.96.02.4-2.2-1.0
Seeking ratio, punishment vs. effort0.51.11.81.3-1.20.3
Retroperitoneal fat weight12.354.969.7-8.38.35.2
Reaction time number correct0.10.51.01.0-0.7-0.2
Reaction time mean minus median0.21.42.5-0.90.91.6
Reaction time mean minus median AUC0.21.01.2-0.81.11.1
Reaction time num false alarms1.52.57.4-0.30.1-2.7
Reaction time num false alarms AUC0.71.54.60.1-0.2-2.1
Reaction time trials correct on left0.10.51.01.0-0.7-0.2
Reaction time trials on left0.10.51.01.0-0.7-0.1
Reaction time mean0.81.74.2-0.80.42.1
Reaction time mean AUC0.61.43.0-1.00.61.7
Median of all reaction times0.81.33.3-0.70.21.8
Reaction time omissions0.40.61.70.10.21.3
Reaction time false alarm rate0.81.23.4-0.20.1-1.8
Reaction time premature initiation rate0.50.81.6-0.70.4-1.3
Reaction time premature initiations0.10.41.3-0.0-0.1-1.2
Std. dev. reaction times0.51.84.2-0.80.72.0
Reaction time trials completed0.10.51.01.0-0.7-0.1
Reaction time trials AUC0.10.51.01.0-0.7-0.0
Run reversals in cocaine runway, females0.30.30.7-0.40.8-0.3
Run reversals in cocaine runway, males0.20.20.60.2-0.30.8
Latency to leave start box in cocaine runway1.72.33.4-1.91.0-1.5
Latency to leave start box in cocaine runway, F3.54.36.2-2.51.9-1.8
Latency to leave start box in cocaine runway, M0.20.20.50.2-0.7-0.3
Std. dev. time between licks in bursts0.61.22.4-0.01.1-1.5
Total sessions with >9 infusions0.30.41.00.3-1.0-0.0
Short access day 1 total inactive lever presses0.40.81.3-1.10.2-1.1
Short access day 10 total inactive lever presses0.21.41.9-1.30.81.4
Short access day 1 total infusions0.51.11.50.5-1.2-1.2
Short access day 10 total infusions0.10.20.60.1-0.80.0
Short access total infusions0.20.30.8-0.1-0.2-0.9
Short access day 1 locomotion0.40.71.30.6-1.10.6
Short access day 10 total locomotion0.72.95.31.7-2.30.8
Short access total locomotion1.82.75.71.5-2.40.3
One hour access (0.3 mA shock)0.60.71.80.6-1.3-0.0
Compulsive drug intake0.81.23.01.7-0.7-0.1
One hour access (shock baseline)0.30.81.4-1.20.1-1.1
Social response proportion1.31.72.2-1.50.81.5
Social responses0.10.10.20.0-0.50.3
Social time0.30.40.7-0.8-0.00.8
Soleus weight0.10.20.5-0.30.7-0.3
Bone: stiffness1.32.43.4-1.91.5-1.2
Tibialis anterior weight0.62.23.4-1.81.51.0
Time to tail flick, vehicle, before self-admin4.25.18.7-2.62.9-0.1
Time to tail flick, vehicle, after self-admin0.40.71.2-0.91.10.4
Time to tail flick, test, before self-admin0.10.10.2-0.1-0.2-0.4
Time to tail flick, test, after self-admin0.40.41.1-1.00.1-0.4
Delta time to tail flick, vehicle, before/after SA0.70.81.31.1-1.10.1
Delta time to tail flick, test, before/after SA0.10.10.2-0.3-0.10.5
Tibia length6.217.325.5-4.95.1-1.4
Ambulatory time before self-admin1.02.97.80.9-0.32.8
Ambulatory time after self-admin0.40.61.01.0-0.3-0.8
Bone: tissue strength0.10.10.2-0.20.5-0.3
Total heroin consumption0.20.30.50.5-0.10.7
Bone: trabecular number0.91.62.4-1.01.3-1.5
Bone: trabecular spacing0.40.61.60.20.11.3
Bone: trabecular thickness1.21.72.4-1.01.5-1.3
Bone: trabecular tissue density0.10.20.3-0.50.60.0
Water consumed over 24 hours0.10.10.2-0.4-0.2-0.4
Number of responses in last shaping day0.50.61.00.1-1.0-1.0