LOC134486165

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134486165 0.28 0.1 0.0e+00 0.12 0.11 0.09 0.11 1.1e-12 8.9e-12 4.3e-10 3.8e-12
2 PL gene expression LOC134486165 0.03 0.02 5.4e-03 0.02 0.01 0.02 0.02 5.2e-03 8.8e-03 3.3e-03 4.9e-03
3 RMTg gene expression LOC134486165 0.2 0.11 8.5e-03 0.09 0.01 -0.01 0.02 2.7e-03 1.7e-01 6.2e-01 1.0e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.11.92.91.2-1.21.7
Area under the delay curve0.60.71.9-0.51.40.2
BMI with tail6.422.233.45.8-4.7-3.3
BMI without tail4.413.517.14.1-3.0-3.8
Body weight9.943.363.58.0-7.8-2.3
Weight adjusted by age0.40.61.20.2-0.8-1.1
Bone surface0.20.30.50.7-0.50.4
Bone volume0.61.01.30.9-0.91.1
Breakpoint value in progressive ratio session0.40.51.4-0.10.4-1.2
Number of licking bursts0.71.21.21.1-1.11.1
Context. condit. distance diff. score0.20.20.4-0.30.70.2
Locomotion velocity, session 11.81.94.4-1.12.10.3
Locomotion distance, session 12.32.95.5-1.52.30.9
Locomotion velocity, session 21.82.13.8-1.51.90.3
Locomotion distance, session 23.75.211.1-2.13.30.5
Locomotion velocity, session 31.31.52.2-0.71.51.3
Locomotion distance, session 30.50.50.7-0.20.90.8
Stereotopy head waving bouts, day 31.11.31.81.2-1.40.8
Stereotopy head waving duration, day 30.20.20.40.5-0.60.0
Locomotion velocity, session 70.90.91.4-1.10.51.2
Locomotion distance, session 70.50.71.70.00.61.3
Stereotopy head waving bouts, day 70.40.50.60.8-0.7-0.6
Stereotopy head waving duration, day 70.10.20.20.4-0.40.3
Locomotion velocity, session 81.41.63.2-1.31.80.1
Locomotion distance, session 82.53.68.5-1.42.90.6
Degree of sensitization distance0.10.10.20.3-0.40.1
Degree of sensitization stereotypy0.50.51.40.20.0-1.2
Conditioned locomotion2.73.13.71.7-1.61.9
Cocaine response after cond. corrected0.60.81.3-0.80.61.1
Cocaine response after cond. not corrected1.11.33.6-0.50.11.9
Cocaine response before conditioning0.70.81.40.5-0.91.2
Saline control response0.00.00.10.3-0.10.1
Bone: connectivity density0.91.32.80.8-0.71.7
Bone: cortical apparent density0.10.10.10.2-0.30.3
Bone: cortical area3.04.66.02.2-2.41.7
Bone: cortical porosity1.92.03.41.8-1.40.8
Bone: cortical porosity2.22.44.22.1-1.60.7
Bone: cortical thickness5.18.510.72.9-3.32.5
Bone: cortical thickness2.12.52.61.6-1.51.6
Bone: cortical tissue density0.00.00.0-0.0-0.20.2
Condit. Reinf. active minus inactive responses1.01.11.61.3-1.30.4
Condit. Reinf. active-inactive response ratio0.50.51.00.6-1.00.3
Condit. Reinf. active responses0.10.20.30.5-0.4-0.3
Condit. Reinf. inactive responses0.70.81.2-0.41.0-1.1
Incentive salience index mean0.00.10.10.2-0.30.0
Condit. Reinf. lever presses0.81.21.4-1.10.9-1.2
Condit. Reinf. active minus inactive responses0.00.00.00.2-0.20.0
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.2-0.5
Condit. Reinf. active responses0.10.20.50.00.1-0.7
Condit. Reinf. inactive responses0.20.20.40.1-0.4-0.7
Condit. Reinf. lever presses1.21.63.5-0.51.0-1.9
Condit. Reinf. lever reinforcers received0.20.30.8-0.30.4-0.9
Conditioned reinforcement - actives1.11.93.0-0.11.71.6
Conditioned reinforcement - inactives0.40.61.5-0.20.51.2
Conditioned locomotion1.72.23.4-1.21.81.4
Patch foraging indifference point 0 sec0.30.51.3-1.20.4-0.2
Patch foraging indifference point AUC1.72.55.8-2.41.30.2
Delay disc. indifference point, 0s delay0.20.20.50.00.7-0.3
Delay disc. indifference point, 16s delay0.60.71.0-0.81.00.6
Delay disc. indifference point, 2s delay0.60.61.30.01.2-0.7
Delay disc. indifference point, 24s delay0.80.92.10.10.71.5
Delay disc. indifference point, 4s delay0.10.10.1-0.20.2-0.4
Delay disc. indifference point, 8s delay0.80.92.4-0.41.60.4
Indifference point function ln k1.12.04.92.2-1.00.4
Indifference point function log k1.12.04.92.2-1.00.4
Patch foraging total patch changes 0 sec0.61.12.5-1.60.8-0.4
Patch foraging total patch changes 12 sec0.60.81.8-1.30.4-0.7
Patch foraging total patch changes 18 sec3.04.610.4-3.21.7-0.7
Patch foraging total patch changes 24 sec1.72.86.4-2.51.3-0.7
Patch foraging total patch changes 6 sec0.91.43.6-1.90.4-0.6
Patch foraging time to switch 0 sec1.22.64.42.1-1.8-0.3
Patch foraging water rate 0 sec2.34.78.7-2.92.3-0.3
Patch foraging water rate 12 sec0.91.92.8-1.51.70.8
Patch foraging water rate 18 sec1.31.93.9-0.71.22.0
Patch foraging water rate 24 sec0.70.91.7-0.81.30.7
Patch foraging water rate 6 sec0.60.92.4-0.6-0.01.6
Seeking ratio, delayed vs. immediate footshock0.70.92.01.4-0.70.5
Distance traveled before self-admin2.83.78.9-1.20.8-3.0
Distance traveled after self-admin0.40.51.0-1.00.40.5
Extensor digitorum longus weight0.10.61.21.1-0.4-0.6
Bone: elastic displacement0.10.10.40.1-0.60.2
Bone: elastic work1.72.23.51.9-1.7-0.5
Bone: endosteal estimation0.40.92.00.8-0.2-1.4
Bone: endosteal perimeter0.10.10.2-0.10.4-0.5
Epididymis fat weight7.224.738.06.2-5.7-2.0
Delta time in closed arm before/after self-admin0.20.10.3-0.60.1-0.3
Delta time in open arm before/after self-admin1.71.72.71.5-1.7-0.4
Diff in mean of infusions in LGA sessions1.41.73.8-0.80.9-1.9
Delay discount exponential model param0.70.71.70.5-1.3-0.4
Extinction: sum of active levers before priming1.01.11.8-0.90.8-1.4
Active lever presses in extinction session 60.90.91.51.2-0.90.6
Bone: final force1.93.04.62.1-1.90.9
Bone: final moment2.23.55.32.3-2.01.1
Food consumed during 24 hour testing period3.04.14.72.2-2.01.9
Glucose0.71.01.70.8-1.3-0.9
Heart weight1.52.35.02.2-1.3-0.2
Delay discount hyperbolic model param0.40.41.10.3-1.0-0.2
Intermittent access intake day 1-15 change0.40.81.20.11.1-1.1
Intermittent access intake escalation0.40.81.40.31.2-0.9
Intermittent access intake escalation 20.80.91.70.70.7-1.3
Intermitt. access day 1 inactive lever presses0.41.54.30.0-0.5-2.1
Intermitt. access day 15 inactive lever presses0.50.91.51.1-1.20.2
Intermitt. access escalation Index0.30.41.10.4-1.10.3
Intermittent access day 1 total infusions1.21.93.51.4-0.71.9
Intermittent access day 15 total infusions1.01.52.51.6-0.21.4
Intermittent access terminal intake (last 3 days)1.01.32.81.7-0.60.8
Intermittent access total infusions1.61.92.71.5-0.81.6
Intermittent access day 1 locomotion1.01.33.20.50.61.8
Intermittent access day 15 total locomotion0.91.74.20.9-0.12.0
Intermittent access total locomotion0.91.12.5-0.10.91.6
Intermittent access standard deviation0.20.41.1-0.41.10.1
Left kidney weight1.56.811.33.4-3.0-0.2
Right kidney weight0.83.77.32.7-2.0-0.0
Cocaine induced anxiety0.30.40.9-0.60.90.1
Post-drug Anxiety0.30.30.70.3-0.5-0.8
Baseline Anxiety2.12.43.50.8-1.9-1.8
Tail length0.83.04.92.0-2.20.3
Length with tail2.711.819.54.0-4.40.0
Length without tail4.715.222.64.8-4.71.0
Times rat made contact with spout0.50.61.7-0.10.1-1.3
Lifetime Intake0.91.02.11.0-0.41.4
Liver weight, left1.01.62.21.1-1.2-1.5
Liver weight, right1.83.14.92.0-2.2-0.6
Locomotor activity1.11.83.8-0.21.2-2.0
Locomotor testing distance0.81.42.5-1.01.6-0.9
Locomotor testing rearing0.71.41.7-1.31.2-1.0
Locomotion in novel chamber0.40.51.10.1-0.61.0
Locomotion in novel chamber post-restriction0.40.71.5-0.8-0.01.2
Fecal boli incidents, locomotor time 10.50.71.6-0.71.30.0
Change in fecal boli incidents, locomotor task1.61.62.90.5-1.71.3
Time >=10cm from walls, locomotor time 10.10.10.20.4-0.4-0.2
Bouts of movement, locomotor time 10.40.41.0-0.41.00.5
Total resting periods, locomotor time 10.50.51.1-0.61.00.4
Rest time, locomotor task time 10.00.10.20.10.4-0.0
Distance moved, locomotor task time 10.30.41.1-0.2-0.21.1
Vertical activity count, locomotor time 10.40.91.11.0-1.00.8
Time >=10cm from walls, locomotor time 21.92.84.62.1-1.9-0.6
Bouts of movement, locomotor time 21.42.33.0-1.21.5-1.7
Total resting periods, locomotor time 21.52.64.3-1.21.5-2.1
Rest time, locomotor task time 20.70.81.1-0.61.1-1.0
Distance moved, locomotor task time 20.70.82.2-0.2-0.41.5
Vertical activity count, locomotor time 20.40.51.20.5-0.41.1
Light reinforcement 10.20.51.0-0.51.00.4
Light reinforcement 20.20.30.6-0.40.80.4
Bone: marrow area0.40.81.80.8-0.2-1.4
Bone: maximum diameter0.40.81.11.0-1.00.5
Bone: maximum force1.73.15.02.2-1.80.9
Bone: maximum moment2.13.76.02.5-2.01.0
Mean time between licks in bursts2.05.08.11.0-2.92.4
Mean num. licks in bursts0.60.91.7-0.80.6-1.3
Cd content in liver0.60.71.20.6-1.10.7
Co content in liver2.22.65.50.2-1.52.4
Cu content in liver0.10.20.3-0.3-0.40.5
Fe content in liver1.62.03.21.8-1.60.3
K content in liver2.52.43.4-1.91.5-1.2
Mg content in liver0.10.10.3-0.1-0.4-0.5
Mn content in liver1.41.53.4-1.81.10.1
Na content in liver0.40.40.5-0.70.7-0.5
Rb content in liver0.80.91.20.9-1.1-0.8
Se content in liver2.42.94.81.9-2.2-0.1
Sr content in liver1.00.91.6-1.20.80.6
Zn content in liver1.92.12.21.4-1.51.4
Bone: minimum diameter0.91.72.71.7-1.50.5
Time in familiar zone, hab. session 10.30.30.6-0.4-0.80.5
Time in novel zone, hab. session 10.70.71.6-0.50.6-1.3
Total zone transitions, hab. session 10.20.30.6-0.20.40.8
Total locomotion distance, hab. session 10.50.71.2-0.91.10.1
Locomotion velocity, hab. session 10.40.50.9-0.50.90.6
Time in familiar zone, hab. session 20.40.41.2-0.31.10.1
Time in novel zone, hab. session 20.30.30.60.2-0.8-0.5
Total zone transitions, hab. session 20.20.30.7-0.20.9-0.1
Total locomotion distance, hab. session 21.92.55.1-1.42.3-0.7
Locomotion velocity, hab. session 21.92.54.9-1.62.2-0.2
Novel to familiar place preference ratio0.30.30.70.9-0.3-0.4
Novelty place preference0.50.51.11.1-0.6-0.2
Time in novel zone, NPP test0.60.61.21.1-0.7-0.5
Total zone transitions, NPP test1.01.52.4-1.41.6-0.4
Total locomotion distance, NPP test3.14.28.2-2.02.9-0.6
Locomotion velocity, NPP test2.83.97.4-2.12.7-0.0
Intraocular pressure0.81.22.30.7-0.81.5
Delta distance traveled before/after self-admin2.52.67.7-0.30.02.8
Delta ambulatory time before/after self-admin2.02.57.5-0.2-0.12.7
Parametrial fat weight10.224.029.45.4-5.0-4.2
Pavlov. Cond. lever latency1.01.32.71.7-1.00.5
Pavlov. Cond. magazine entry latency0.81.01.51.1-0.7-1.2
Pavlov. Cond. change in total contacts0.30.30.7-0.50.0-0.8
Pavlov. Cond. index score0.10.20.4-0.2-0.2-0.7
Pavlov. Cond. latency score0.10.20.4-0.60.1-0.4
Pavlov. Cond. lever contacts0.70.81.4-1.20.6-0.8
Pavlov. Cond. magazine entry number0.70.91.8-0.70.71.3
Pavlov. Cond. intertrial magazine entries0.30.40.5-0.50.70.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.9-0.10.0-1.0
Pavlov. Cond. response bias0.50.61.20.5-0.6-1.1
Pavlov. Cond. lever latency0.71.02.0-0.80.61.4
Pavlov. Cond. magazine entry latency0.10.10.30.1-0.1-0.5
Pavlov. Cond. change in total contacts0.61.02.90.2-0.4-1.7
Pavlov. Cond. index score0.50.71.50.6-0.7-1.2
Pavlov. Cond. latency score0.40.51.00.5-0.6-1.0
Pavlov. Cond. lever contacts0.81.02.20.8-0.5-1.5
Pavlov. Cond. magazine entry number0.20.30.3-0.50.60.5
Pavlov. Cond. intertrial magazine entries0.10.10.4-0.10.60.1
Pavlov. Cond. lever-magazine prob. diff.0.71.01.80.7-0.8-1.3
Pavlov. Cond. response bias0.70.91.60.8-0.7-1.3
Time in closed arm before self-admin0.70.81.60.7-0.71.2
Time in closed arm after self-admin0.90.92.6-0.0-0.41.6
Time in open arm before self-admin0.30.30.3-0.60.5-0.5
Time in open arm after self-admin0.60.61.50.3-0.5-1.2
Bone: periosteal estimation0.81.73.31.8-1.30.0
Bone: periosteal perimeter0.20.40.60.4-0.60.8
Bone: post-yield work0.81.22.31.5-0.80.8
Progressive ratio test 1 active lever presses0.10.10.10.20.30.3
Progressive ratio test 1 breakpoint0.10.10.10.30.20.3
Progressive ratio test 1 inactive lever presses1.11.62.6-0.71.3-1.6
Progressive ratio test 2 active lever presses0.20.20.60.20.8-0.0
Progressive ratio test 2 breakpoint0.20.20.60.20.80.1
Progressive ratio test 2 inactive lever presses0.00.10.20.40.20.1
Incentive Sensitization - Responses0.10.10.3-0.30.6-0.2
Incentive Sensitization - Breakpoint0.20.20.4-0.40.7-0.2
Sum of active levers in priming session hrs 5-60.10.10.2-0.40.1-0.4
Progressive ratio0.30.51.30.2-0.31.1
Food seeking constrained by brief footshock3.23.96.0-2.42.21.0
Seeking ratio, punishment vs. effort0.71.11.8-1.31.2-0.3
Retroperitoneal fat weight12.954.969.78.3-8.3-5.2
Reaction time number correct0.30.51.0-1.00.70.2
Reaction time mean minus median0.51.42.50.9-0.9-1.6
Reaction time mean minus median AUC0.41.01.20.8-1.1-1.1
Reaction time num false alarms1.82.57.40.3-0.12.7
Reaction time num false alarms AUC1.01.54.6-0.10.22.1
Reaction time trials correct on left0.30.51.0-1.00.70.2
Reaction time trials on left0.30.51.0-1.00.70.1
Reaction time mean1.11.74.20.8-0.4-2.1
Reaction time mean AUC0.91.43.01.0-0.6-1.7
Median of all reaction times0.91.33.30.7-0.2-1.8
Reaction time omissions0.40.61.7-0.1-0.2-1.3
Reaction time false alarm rate0.81.23.40.2-0.11.8
Reaction time premature initiation rate0.60.81.60.7-0.41.3
Reaction time premature initiations0.20.41.30.00.11.2
Std. dev. reaction times1.01.84.20.8-0.7-2.0
Reaction time trials completed0.30.51.0-1.00.70.1
Reaction time trials AUC0.30.51.0-1.00.70.0
Run reversals in cocaine runway, females0.30.30.70.4-0.80.3
Run reversals in cocaine runway, males0.20.20.6-0.20.3-0.8
Latency to leave start box in cocaine runway2.02.33.41.9-1.01.5
Latency to leave start box in cocaine runway, F3.84.36.22.5-1.91.8
Latency to leave start box in cocaine runway, M0.20.20.5-0.20.70.3
Std. dev. time between licks in bursts0.91.22.40.0-1.11.5
Total sessions with >9 infusions0.30.41.0-0.31.00.0
Short access day 1 total inactive lever presses0.60.81.31.1-0.21.1
Short access day 10 total inactive lever presses0.61.41.91.3-0.8-1.4
Short access day 1 total infusions0.81.11.5-0.51.21.2
Short access day 10 total infusions0.20.20.6-0.10.8-0.0
Short access total infusions0.20.30.80.10.20.9
Short access day 1 locomotion0.50.71.3-0.61.1-0.6
Short access day 10 total locomotion1.62.95.3-1.72.3-0.8
Short access total locomotion2.32.75.7-1.52.4-0.3
One hour access (0.3 mA shock)0.60.71.8-0.61.30.0
Compulsive drug intake1.01.23.0-1.70.70.1
One hour access (shock baseline)0.50.81.41.2-0.11.1
Social response proportion1.51.72.21.5-0.8-1.5
Social responses0.10.10.2-0.00.5-0.3
Social time0.30.40.70.80.0-0.8
Soleus weight0.10.20.50.3-0.70.3
Bone: stiffness1.52.43.41.9-1.51.2
Tibialis anterior weight0.72.23.41.8-1.5-1.0
Time to tail flick, vehicle, before self-admin4.95.18.72.6-2.90.1
Time to tail flick, vehicle, after self-admin0.50.71.20.9-1.1-0.4
Time to tail flick, test, before self-admin0.10.10.20.10.20.4
Time to tail flick, test, after self-admin0.40.41.11.0-0.10.4
Delta time to tail flick, vehicle, before/after SA0.80.81.3-1.11.1-0.1
Delta time to tail flick, test, before/after SA0.10.10.20.30.1-0.5
Tibia length6.317.325.54.9-5.11.4
Ambulatory time before self-admin2.02.97.8-0.90.3-2.8
Ambulatory time after self-admin0.50.61.0-1.00.30.8
Bone: tissue strength0.10.10.20.2-0.50.3
Total heroin consumption0.20.30.5-0.50.1-0.7
Bone: trabecular number1.01.62.41.0-1.31.5
Bone: trabecular spacing0.40.61.6-0.2-0.1-1.3
Bone: trabecular thickness1.41.72.41.0-1.51.3
Bone: trabecular tissue density0.10.20.30.5-0.6-0.0
Water consumed over 24 hours0.10.10.20.40.20.4
Number of responses in last shaping day0.60.61.0-0.11.01.0