LOC134485980

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr2_229434325_229435123 0.15 0.07 0.0e+00 0.15 0.16 0.15 0.16 3.1e-16 2.5e-17 3.5e-16 3.4e-17
2 Liver intron excision ratio chr2_229434325_229435405 0.15 0.07 0.0e+00 0.15 0.16 0.15 0.16 2.2e-16 2.3e-17 2.7e-16 2.8e-17
3 Liver gene expression LOC134485980 0.36 0.11 0.0e+00 0.19 0.3 0.3 0.3 2.4e-20 2.9e-33 1.4e-33 1.6e-33

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.70.0-0.0-0.8
Area under the delay curve0.10.20.2-0.40.4-0.4
BMI with tail1.34.66.92.6-2.60.1
BMI without tail0.84.16.12.5-2.50.3
Body weight1.56.710.03.2-3.10.5
Weight adjusted by age0.00.10.30.0-0.0-0.5
Bone surface0.00.10.1-0.20.2-0.4
Bone volume0.00.10.1-0.30.30.1
Breakpoint value in progressive ratio session0.81.41.61.3-1.3-1.0
Number of licking bursts0.41.11.51.2-1.2-0.6
Context. condit. distance diff. score0.40.51.00.6-0.6-1.0
Locomotion velocity, session 10.20.20.60.2-0.20.8
Locomotion distance, session 10.10.10.10.4-0.40.3
Locomotion velocity, session 20.10.10.30.1-0.1-0.5
Locomotion distance, session 20.20.30.5-0.50.50.7
Locomotion velocity, session 30.80.92.5-0.30.31.6
Locomotion distance, session 30.00.00.0-0.10.1-0.0
Stereotopy head waving bouts, day 30.50.61.8-0.10.11.4
Stereotopy head waving duration, day 30.60.71.70.5-0.41.3
Locomotion velocity, session 70.60.71.01.0-1.0-0.2
Locomotion distance, session 71.11.41.61.1-1.1-1.3
Stereotopy head waving bouts, day 73.33.85.3-1.71.82.3
Stereotopy head waving duration, day 74.25.27.2-2.02.12.7
Locomotion velocity, session 80.00.00.0-0.00.0-0.1
Locomotion distance, session 80.30.40.50.7-0.7-0.5
Degree of sensitization distance1.71.92.11.3-1.3-1.5
Degree of sensitization stereotypy3.03.44.1-1.71.72.0
Conditioned locomotion1.41.62.0-1.41.40.9
Cocaine response after cond. corrected0.00.00.1-0.10.10.3
Cocaine response after cond. not corrected0.00.10.20.0-0.1-0.4
Cocaine response before conditioning0.20.20.50.3-0.3-0.7
Saline control response1.82.43.5-1.41.41.9
Bone: connectivity density0.50.82.2-0.20.2-1.5
Bone: cortical apparent density0.20.40.50.7-0.7-0.3
Bone: cortical area1.11.82.61.6-1.60.3
Bone: cortical porosity0.30.30.90.0-0.01.0
Bone: cortical porosity0.40.41.20.3-0.21.1
Bone: cortical thickness1.32.23.31.8-1.80.1
Bone: cortical thickness1.01.21.81.3-1.3-0.0
Bone: cortical tissue density0.20.40.50.7-0.7-0.3
Condit. Reinf. active minus inactive responses0.60.71.01.0-1.00.3
Condit. Reinf. active-inactive response ratio2.62.84.12.0-2.00.3
Condit. Reinf. active responses0.10.10.3-0.10.10.5
Condit. Reinf. inactive responses1.82.33.3-1.81.80.7
Incentive salience index mean0.50.71.01.0-1.00.1
Condit. Reinf. lever presses0.00.10.20.0-0.00.4
Condit. Reinf. active minus inactive responses0.10.10.10.3-0.30.3
Condit. Reinf. active-inactive response ratio0.30.40.60.8-0.8-0.1
Condit. Reinf. active responses0.20.30.50.7-0.7-0.1
Condit. Reinf. inactive responses0.10.10.20.5-0.50.0
Condit. Reinf. lever presses0.60.91.21.1-1.1-0.7
Condit. Reinf. lever reinforcers received0.20.30.50.7-0.7-0.2
Conditioned reinforcement - actives1.04.04.2-2.02.02.0
Conditioned reinforcement - inactives0.51.41.7-1.31.30.9
Conditioned locomotion1.92.84.2-2.12.00.3
Patch foraging indifference point 0 sec0.20.40.7-0.50.5-0.8
Patch foraging indifference point AUC0.30.71.01.0-1.0-0.4
Delay disc. indifference point, 0s delay0.91.11.6-1.31.3-0.1
Delay disc. indifference point, 16s delay0.00.00.00.2-0.2-0.2
Delay disc. indifference point, 2s delay1.92.13.2-1.81.80.3
Delay disc. indifference point, 24s delay0.20.30.4-0.70.6-0.3
Delay disc. indifference point, 4s delay0.60.61.70.3-0.3-1.3
Delay disc. indifference point, 8s delay0.20.30.4-0.60.60.5
Indifference point function ln k0.00.00.00.2-0.20.1
Indifference point function log k0.00.00.00.2-0.20.1
Patch foraging total patch changes 0 sec0.10.40.8-0.30.3-0.9
Patch foraging total patch changes 12 sec0.60.81.00.9-0.9-1.0
Patch foraging total patch changes 18 sec0.20.51.10.4-0.4-1.1
Patch foraging total patch changes 24 sec0.00.10.2-0.20.20.4
Patch foraging total patch changes 6 sec1.72.84.21.5-1.5-2.1
Patch foraging time to switch 0 sec0.31.21.7-1.31.30.5
Patch foraging water rate 0 sec0.20.91.21.1-1.1-0.5
Patch foraging water rate 12 sec0.31.21.71.3-1.30.6
Patch foraging water rate 18 sec1.43.24.22.1-2.1-1.0
Patch foraging water rate 24 sec1.52.12.91.7-1.7-0.7
Patch foraging water rate 6 sec4.05.98.72.9-2.9-0.6
Seeking ratio, delayed vs. immediate footshock0.91.21.4-1.21.2-1.0
Distance traveled before self-admin0.40.91.2-0.80.81.1
Distance traveled after self-admin0.00.00.0-0.10.1-0.1
Extensor digitorum longus weight1.66.59.22.3-2.33.0
Bone: elastic displacement0.40.50.60.8-0.80.5
Bone: elastic work1.92.53.81.9-1.90.0
Bone: endosteal estimation0.00.00.1-0.00.00.3
Bone: endosteal perimeter0.20.41.2-0.20.21.1
Epididymis fat weight0.21.11.61.2-1.20.4
Delta time in closed arm before/after self-admin0.40.40.8-0.40.40.9
Delta time in open arm before/after self-admin3.13.75.1-1.71.72.3
Diff in mean of infusions in LGA sessions1.93.45.71.5-1.5-2.4
Delay discount exponential model param0.10.20.30.3-0.30.5
Extinction: sum of active levers before priming1.42.22.71.7-1.7-1.0
Active lever presses in extinction session 60.60.61.7-0.10.1-1.3
Bone: final force0.50.81.21.1-1.1-0.1
Bone: final moment0.61.01.41.2-1.2-0.3
Food consumed during 24 hour testing period0.71.42.11.5-1.5-0.3
Glucose2.33.65.02.2-2.2-0.9
Heart weight0.40.60.60.7-0.70.8
Delay discount hyperbolic model param0.20.20.30.5-0.50.5
Intermittent access intake day 1-15 change0.10.40.6-0.80.8-0.1
Intermittent access intake escalation0.10.50.5-0.70.7-0.6
Intermittent access intake escalation 20.10.20.7-0.00.0-0.8
Intermitt. access day 1 inactive lever presses0.00.20.20.5-0.5-0.2
Intermitt. access day 15 inactive lever presses0.00.20.50.3-0.30.7
Intermitt. access escalation Index0.20.71.5-0.50.51.2
Intermittent access day 1 total infusions0.51.42.11.5-1.5-0.2
Intermittent access day 15 total infusions0.40.91.01.0-1.0-0.8
Intermittent access terminal intake (last 3 days)0.61.01.31.2-1.2-0.5
Intermittent access total infusions1.21.42.01.4-1.4-0.4
Intermittent access day 1 locomotion0.30.50.80.9-0.90.0
Intermittent access day 15 total locomotion0.00.10.3-0.30.3-0.6
Intermittent access total locomotion0.20.20.30.6-0.6-0.4
Intermittent access standard deviation0.10.30.40.7-0.6-0.3
Left kidney weight0.42.84.22.0-2.00.4
Right kidney weight0.32.12.81.7-1.70.7
Cocaine induced anxiety0.00.00.0-0.10.1-0.2
Post-drug Anxiety0.20.20.4-0.60.6-0.1
Baseline Anxiety0.00.10.10.3-0.30.2
Tail length0.00.30.70.3-0.20.8
Length with tail0.31.42.11.4-1.40.5
Length without tail0.10.30.50.7-0.70.2
Times rat made contact with spout2.32.73.61.5-1.5-1.9
Lifetime Intake0.60.71.11.0-1.0-0.0
Liver weight, left0.10.20.5-0.10.10.7
Liver weight, right0.20.30.50.7-0.7-0.0
Locomotor activity0.40.50.80.7-0.7-0.9
Locomotor testing distance0.30.80.80.9-0.9-0.9
Locomotor testing rearing2.59.19.23.0-3.0-3.0
Locomotion in novel chamber1.21.63.4-0.90.9-1.8
Locomotion in novel chamber post-restriction0.00.00.0-0.10.1-0.2
Fecal boli incidents, locomotor time 10.30.90.9-1.01.00.9
Change in fecal boli incidents, locomotor task2.42.52.91.7-1.7-1.3
Time >=10cm from walls, locomotor time 12.02.54.91.1-1.1-2.2
Bouts of movement, locomotor time 10.70.91.10.9-0.9-1.0
Total resting periods, locomotor time 10.50.60.60.8-0.8-0.8
Rest time, locomotor task time 10.61.01.4-0.90.91.2
Distance moved, locomotor task time 10.30.80.90.9-0.9-0.9
Vertical activity count, locomotor time 10.10.40.80.5-0.5-0.9
Time >=10cm from walls, locomotor time 20.10.40.90.3-0.31.0
Bouts of movement, locomotor time 20.10.50.5-0.70.7-0.6
Total resting periods, locomotor time 20.10.50.5-0.70.7-0.7
Rest time, locomotor task time 20.10.20.4-0.60.6-0.0
Distance moved, locomotor task time 20.10.10.1-0.30.30.2
Vertical activity count, locomotor time 20.00.10.1-0.30.30.2
Light reinforcement 10.31.52.21.5-1.5-0.2
Light reinforcement 20.00.10.10.3-0.3-0.0
Bone: marrow area0.00.00.0-0.00.00.2
Bone: maximum diameter0.10.30.40.6-0.60.1
Bone: maximum force0.30.50.80.9-0.90.1
Bone: maximum moment0.40.71.11.0-1.0-0.2
Mean time between licks in bursts0.00.30.30.5-0.5-0.5
Mean num. licks in bursts0.00.10.4-0.00.0-0.6
Cd content in liver1.11.21.61.3-1.3-0.6
Co content in liver0.81.01.30.9-0.91.1
Cu content in liver1.01.23.30.3-0.3-1.8
Fe content in liver2.83.54.4-2.12.11.3
K content in liver0.50.51.3-0.20.1-1.1
Mg content in liver0.50.51.30.3-0.3-1.1
Mn content in liver1.01.11.11.0-1.1-1.1
Na content in liver0.10.10.3-0.20.2-0.6
Rb content in liver0.60.70.7-0.80.80.9
Se content in liver0.30.30.5-0.70.70.3
Sr content in liver0.10.10.20.4-0.4-0.3
Zn content in liver7.89.127.20.2-0.2-5.2
Bone: minimum diameter1.01.92.41.5-1.50.9
Time in familiar zone, hab. session 10.80.91.0-0.90.91.0
Time in novel zone, hab. session 10.00.00.00.1-0.1-0.2
Total zone transitions, hab. session 10.91.32.9-0.70.71.7
Total locomotion distance, hab. session 10.20.20.3-0.50.50.5
Locomotion velocity, hab. session 10.00.00.00.1-0.10.1
Time in familiar zone, hab. session 20.50.60.80.9-0.9-0.5
Time in novel zone, hab. session 20.50.60.8-0.90.90.2
Total zone transitions, hab. session 20.20.20.7-0.10.10.8
Total locomotion distance, hab. session 20.40.50.60.8-0.8-0.4
Locomotion velocity, hab. session 20.20.30.30.6-0.6-0.4
Novel to familiar place preference ratio0.40.50.80.6-0.6-0.9
Novelty place preference0.70.91.30.9-0.9-1.1
Time in novel zone, NPP test0.91.01.40.9-0.9-1.2
Total zone transitions, NPP test0.30.50.60.8-0.80.5
Total locomotion distance, NPP test0.71.01.31.1-1.1-0.7
Locomotion velocity, NPP test1.11.62.01.4-1.4-0.9
Intraocular pressure0.81.41.4-1.21.21.2
Delta distance traveled before/after self-admin0.60.71.00.7-0.7-1.0
Delta ambulatory time before/after self-admin0.71.21.61.0-1.0-1.3
Parametrial fat weight0.10.20.40.2-0.2-0.6
Pavlov. Cond. lever latency0.40.50.70.9-0.90.3
Pavlov. Cond. magazine entry latency0.50.60.9-0.70.70.9
Pavlov. Cond. change in total contacts0.40.40.6-0.80.80.0
Pavlov. Cond. index score0.10.20.2-0.50.5-0.2
Pavlov. Cond. latency score0.20.30.4-0.60.6-0.3
Pavlov. Cond. lever contacts0.10.10.2-0.30.3-0.4
Pavlov. Cond. magazine entry number0.30.30.70.4-0.4-0.8
Pavlov. Cond. intertrial magazine entries0.00.10.1-0.30.3-0.0
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.20.2-0.6
Pavlov. Cond. response bias0.40.50.5-0.70.70.7
Pavlov. Cond. lever latency0.50.71.1-1.01.0-0.1
Pavlov. Cond. magazine entry latency0.20.20.3-0.60.60.3
Pavlov. Cond. change in total contacts0.20.50.50.7-0.7-0.6
Pavlov. Cond. index score0.00.00.0-0.10.10.1
Pavlov. Cond. latency score0.00.00.1-0.20.2-0.1
Pavlov. Cond. lever contacts0.50.71.01.0-1.00.3
Pavlov. Cond. magazine entry number0.10.20.20.5-0.5-0.3
Pavlov. Cond. intertrial magazine entries0.51.11.41.2-1.2-0.8
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.10.10.1
Pavlov. Cond. response bias0.30.50.50.7-0.70.7
Time in closed arm before self-admin0.00.10.20.1-0.1-0.5
Time in closed arm after self-admin0.60.71.60.5-0.5-1.3
Time in open arm before self-admin2.22.73.21.8-1.8-1.3
Time in open arm after self-admin1.01.12.2-0.80.81.5
Bone: periosteal estimation0.30.81.11.0-1.00.5
Bone: periosteal perimeter0.30.61.40.4-0.41.2
Bone: post-yield work0.71.21.8-1.31.30.3
Progressive ratio test 1 active lever presses0.71.11.71.3-1.30.4
Progressive ratio test 1 breakpoint0.71.31.91.4-1.40.2
Progressive ratio test 1 inactive lever presses0.00.10.20.4-0.4-0.0
Progressive ratio test 2 active lever presses0.50.80.90.9-0.90.7
Progressive ratio test 2 breakpoint0.60.81.11.0-1.00.5
Progressive ratio test 2 inactive lever presses0.30.81.7-0.60.61.3
Incentive Sensitization - Responses0.51.31.4-1.21.21.0
Incentive Sensitization - Breakpoint0.40.91.0-1.01.00.9
Sum of active levers in priming session hrs 5-62.82.74.31.4-1.4-2.1
Progressive ratio0.00.10.30.0-0.00.5
Food seeking constrained by brief footshock1.82.33.31.8-1.8-0.5
Seeking ratio, punishment vs. effort0.51.21.21.1-1.1-1.1
Retroperitoneal fat weight0.41.82.71.6-1.6-0.2
Reaction time number correct0.20.60.70.9-0.9-0.5
Reaction time mean minus median0.31.92.3-1.51.51.1
Reaction time mean minus median AUC0.21.01.3-1.21.10.7
Reaction time num false alarms2.44.14.3-2.12.11.9
Reaction time num false alarms AUC2.14.85.9-2.12.12.4
Reaction time trials correct on left0.20.60.70.9-0.9-0.5
Reaction time trials on left0.10.40.60.7-0.7-0.5
Reaction time mean0.10.30.3-0.60.60.5
Reaction time mean AUC0.10.20.3-0.40.40.6
Median of all reaction times0.00.00.00.1-0.10.2
Reaction time omissions2.13.44.8-2.22.20.9
Reaction time false alarm rate3.04.24.3-2.12.12.0
Reaction time premature initiation rate0.50.72.10.1-0.11.5
Reaction time premature initiations0.30.82.30.3-0.31.5
Std. dev. reaction times0.72.33.0-1.71.70.9
Reaction time trials completed0.10.40.60.7-0.7-0.5
Reaction time trials AUC0.10.50.70.8-0.8-0.4
Run reversals in cocaine runway, females0.91.01.50.8-0.8-1.2
Run reversals in cocaine runway, males1.11.21.41.2-1.2-1.0
Latency to leave start box in cocaine runway0.50.61.80.3-0.3-1.3
Latency to leave start box in cocaine runway, F0.00.10.1-0.20.2-0.3
Latency to leave start box in cocaine runway, M1.81.74.10.7-0.7-2.0
Std. dev. time between licks in bursts0.30.51.10.5-0.5-1.1
Total sessions with >9 infusions0.10.10.2-0.00.00.5
Short access day 1 total inactive lever presses0.20.30.40.6-0.6-0.4
Short access day 10 total inactive lever presses0.21.62.4-1.51.50.1
Short access day 1 total infusions0.40.71.0-0.80.81.0
Short access day 10 total infusions0.20.30.40.6-0.6-0.2
Short access total infusions0.10.10.20.5-0.50.1
Short access day 1 locomotion0.00.00.1-0.10.10.3
Short access day 10 total locomotion0.10.50.80.6-0.6-0.9
Short access total locomotion0.20.30.70.3-0.3-0.8
One hour access (0.3 mA shock)0.40.50.50.7-0.7-0.6
Compulsive drug intake0.30.40.40.7-0.7-0.6
One hour access (shock baseline)0.10.20.30.5-0.5-0.2
Social response proportion0.91.21.6-1.31.30.6
Social responses0.60.81.20.8-0.8-1.1
Social time0.61.01.5-1.21.2-0.0
Soleus weight0.30.82.00.5-0.51.4
Bone: stiffness0.50.91.31.1-1.1-0.2
Tibialis anterior weight2.27.68.83.0-2.92.3
Time to tail flick, vehicle, before self-admin1.31.62.1-1.41.40.9
Time to tail flick, vehicle, after self-admin1.73.43.7-1.91.91.7
Time to tail flick, test, before self-admin0.70.81.1-1.11.10.2
Time to tail flick, test, after self-admin0.30.30.3-0.50.50.5
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.10.10.5
Delta time to tail flick, test, before/after SA0.20.30.40.6-0.60.2
Tibia length0.30.91.21.1-1.10.6
Ambulatory time before self-admin0.41.11.5-1.01.01.2
Ambulatory time after self-admin0.50.71.0-1.01.00.5
Bone: tissue strength0.90.91.31.1-1.1-0.4
Total heroin consumption0.10.20.20.4-0.4-0.4
Bone: trabecular number1.01.82.5-1.61.60.5
Bone: trabecular spacing2.13.03.11.7-1.7-1.8
Bone: trabecular thickness0.30.40.6-0.50.50.8
Bone: trabecular tissue density0.20.30.6-0.40.40.8
Water consumed over 24 hours0.30.50.70.8-0.8-0.4
Number of responses in last shaping day1.82.35.0-1.01.02.2