LOC134485978

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IC gene expression LOC134485978 0.17 0.07 4.5e-05 0.03 0.09 0.1 0.08 1.8e-02 2.1e-04 8.0e-05 3.2e-04
2 PL gene expression LOC134485978 0.09 0.05 1.3e-06 0.07 0.06 0.06 0.06 7.2e-08 3.4e-07 4.5e-07 2.2e-07
3 Brain gene expression LOC134485978 0.07 0.04 1.4e-05 0.04 0.05 0.04 0.05 6.4e-05 1.1e-05 7.1e-05 2.8e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.6-0.10.80.6
Area under the delay curve0.00.00.1-0.1-0.20.3
BMI with tail0.10.30.70.40.4-0.9
BMI without tail0.42.22.71.31.5-1.6
Body weight0.20.91.90.60.7-1.4
Weight adjusted by age0.00.10.10.00.4-0.1
Bone surface0.10.30.70.30.90.1
Bone volume0.51.02.10.81.4-0.4
Breakpoint value in progressive ratio session0.71.32.0-1.4-0.81.1
Number of licking bursts1.44.25.4-2.3-2.31.5
Context. condit. distance diff. score2.63.24.6-2.1-1.31.8
Locomotion velocity, session 10.50.61.60.4-0.2-1.3
Locomotion distance, session 11.21.53.0-1.2-1.7-0.0
Locomotion velocity, session 20.10.10.1-0.3-0.40.1
Locomotion distance, session 20.71.02.4-0.6-1.6-0.6
Locomotion velocity, session 30.60.71.4-0.4-1.2-0.7
Locomotion distance, session 30.60.70.9-1.0-0.90.4
Stereotopy head waving bouts, day 30.80.91.80.90.5-1.3
Stereotopy head waving duration, day 30.40.51.10.50.2-1.1
Locomotion velocity, session 70.20.30.5-0.7-0.50.2
Locomotion distance, session 73.03.84.5-2.1-2.11.6
Stereotopy head waving bouts, day 73.64.24.82.11.9-2.2
Stereotopy head waving duration, day 73.44.25.52.01.7-2.3
Locomotion velocity, session 80.20.20.5-0.7-0.20.2
Locomotion distance, session 83.14.56.5-2.5-2.41.1
Degree of sensitization distance1.31.42.0-1.2-0.91.4
Degree of sensitization stereotypy4.44.95.12.32.3-2.1
Conditioned locomotion3.74.46.02.12.5-1.6
Cocaine response after cond. corrected0.60.91.21.11.0-0.6
Cocaine response after cond. not corrected0.91.31.81.41.3-0.5
Cocaine response before conditioning0.00.00.10.20.20.0
Saline control response0.70.92.00.90.2-1.4
Bone: connectivity density0.91.42.6-1.2-0.51.6
Bone: cortical apparent density0.10.10.2-0.5-0.10.3
Bone: cortical area0.50.81.40.81.2-0.7
Bone: cortical porosity0.80.91.41.10.5-1.2
Bone: cortical porosity1.21.42.01.30.7-1.4
Bone: cortical thickness0.30.51.10.51.1-0.3
Bone: cortical thickness1.82.23.11.51.8-1.1
Bone: cortical tissue density0.10.10.3-0.5-0.20.3
Condit. Reinf. active minus inactive responses0.50.50.8-0.9-0.9-0.1
Condit. Reinf. active-inactive response ratio0.60.71.2-0.9-1.1-0.1
Condit. Reinf. active responses0.20.20.5-0.4-0.7-0.3
Condit. Reinf. inactive responses0.60.81.01.00.8-0.8
Incentive salience index mean0.30.30.5-0.7-0.7-0.0
Condit. Reinf. lever presses0.00.00.1-0.2-0.1-0.1
Condit. Reinf. active minus inactive responses0.40.61.30.51.1-0.4
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.10.4
Condit. Reinf. active responses0.81.12.30.81.5-0.6
Condit. Reinf. inactive responses0.50.81.00.71.0-0.9
Condit. Reinf. lever presses0.30.41.10.51.0-0.0
Condit. Reinf. lever reinforcers received0.71.02.20.81.5-0.6
Conditioned reinforcement - actives0.10.40.8-0.6-0.9-0.2
Conditioned reinforcement - inactives0.00.10.20.10.4-0.3
Conditioned locomotion0.50.71.0-0.9-0.51.0
Patch foraging indifference point 0 sec1.02.73.0-1.7-1.61.6
Patch foraging indifference point AUC0.10.20.3-0.60.10.4
Delay disc. indifference point, 0s delay0.50.50.8-0.8-0.40.9
Delay disc. indifference point, 16s delay0.40.61.2-0.6-1.10.4
Delay disc. indifference point, 2s delay0.10.10.30.60.3-0.0
Delay disc. indifference point, 24s delay0.10.10.30.10.50.2
Delay disc. indifference point, 4s delay0.10.20.3-0.30.10.6
Delay disc. indifference point, 8s delay0.20.30.50.50.3-0.7
Indifference point function ln k0.20.61.7-0.5-1.30.1
Indifference point function log k0.20.61.7-0.5-1.30.1
Patch foraging total patch changes 0 sec1.02.93.3-1.8-1.71.6
Patch foraging total patch changes 12 sec0.70.91.4-1.2-0.61.0
Patch foraging total patch changes 18 sec1.33.03.8-2.0-1.61.6
Patch foraging total patch changes 24 sec0.10.41.0-1.0-0.60.1
Patch foraging total patch changes 6 sec2.74.55.9-2.3-1.62.4
Patch foraging time to switch 0 sec0.10.20.40.50.6-0.2
Patch foraging water rate 0 sec0.10.40.5-0.6-0.70.5
Patch foraging water rate 12 sec0.10.30.60.4-0.4-0.8
Patch foraging water rate 18 sec0.30.71.0-0.7-1.00.8
Patch foraging water rate 24 sec1.82.54.0-1.6-2.01.0
Patch foraging water rate 6 sec0.30.51.2-0.5-1.1-0.2
Seeking ratio, delayed vs. immediate footshock0.40.50.90.70.90.4
Distance traveled before self-admin0.20.40.50.60.7-0.7
Distance traveled after self-admin0.20.30.4-0.6-0.60.4
Extensor digitorum longus weight3.915.719.93.93.5-4.5
Bone: elastic displacement0.20.20.30.50.2-0.6
Bone: elastic work0.20.20.30.40.5-0.5
Bone: endosteal estimation0.10.10.30.40.1-0.5
Bone: endosteal perimeter0.20.40.80.70.2-0.9
Epididymis fat weight0.10.30.6-0.1-0.8-0.4
Delta time in closed arm before/after self-admin0.30.20.5-0.2-0.4-0.7
Delta time in open arm before/after self-admin1.01.11.81.20.5-1.4
Diff in mean of infusions in LGA sessions1.93.34.1-2.0-1.42.0
Delay discount exponential model param0.00.00.10.10.0-0.3
Extinction: sum of active levers before priming0.10.10.3-0.00.50.4
Active lever presses in extinction session 64.24.25.0-2.2-1.92.0
Bone: final force0.00.10.1-0.4-0.10.2
Bone: final moment0.00.00.0-0.2-0.00.2
Food consumed during 24 hour testing period0.10.20.50.30.3-0.7
Glucose0.00.00.0-0.10.20.1
Heart weight0.81.31.41.11.2-1.1
Delay discount hyperbolic model param0.00.00.10.00.0-0.3
Intermittent access intake day 1-15 change0.00.00.10.30.20.1
Intermittent access intake escalation0.00.10.4-0.10.00.6
Intermittent access intake escalation 20.10.20.6-0.10.10.8
Intermitt. access day 1 inactive lever presses0.00.10.10.20.2-0.4
Intermitt. access day 15 inactive lever presses0.31.51.81.11.2-1.3
Intermitt. access escalation Index0.61.82.11.51.2-1.3
Intermittent access day 1 total infusions0.10.20.3-0.20.4-0.5
Intermittent access day 15 total infusions0.00.10.1-0.30.10.3
Intermittent access terminal intake (last 3 days)0.10.30.4-0.7-0.50.3
Intermittent access total infusions0.10.20.4-0.7-0.30.1
Intermittent access day 1 locomotion0.10.10.3-0.50.1-0.1
Intermittent access day 15 total locomotion0.10.40.6-0.8-0.20.7
Intermittent access total locomotion0.20.20.4-0.60.30.3
Intermittent access standard deviation0.00.10.1-0.2-0.20.3
Left kidney weight0.21.31.61.01.3-1.2
Right kidney weight0.21.31.51.01.1-1.2
Cocaine induced anxiety0.30.81.2-0.9-1.10.7
Post-drug Anxiety0.60.61.0-0.7-1.00.7
Baseline Anxiety0.10.20.30.50.4-0.5
Tail length0.21.21.50.91.2-1.1
Length with tail0.10.60.90.70.6-0.9
Length without tail0.10.30.6-0.5-0.80.1
Times rat made contact with spout0.40.50.9-0.70.10.9
Lifetime Intake0.10.20.4-0.6-0.4-0.1
Liver weight, left0.20.30.7-0.5-0.80.2
Liver weight, right0.71.32.1-1.5-0.91.0
Locomotor activity0.00.00.1-0.20.10.3
Locomotor testing distance0.10.20.30.40.6-0.3
Locomotor testing rearing0.20.61.1-0.90.01.1
Locomotion in novel chamber1.01.33.4-0.50.51.9
Locomotion in novel chamber post-restriction0.51.52.21.31.5-0.7
Fecal boli incidents, locomotor time 10.20.61.30.41.1-0.6
Change in fecal boli incidents, locomotor task0.00.10.10.10.30.2
Time >=10cm from walls, locomotor time 12.12.64.8-1.7-0.52.2
Bouts of movement, locomotor time 10.30.30.8-0.4-0.10.9
Total resting periods, locomotor time 10.20.20.4-0.5-0.20.6
Rest time, locomotor task time 11.11.82.41.61.2-1.3
Distance moved, locomotor task time 10.20.60.8-0.8-0.90.6
Vertical activity count, locomotor time 10.11.01.0-1.0-1.01.0
Time >=10cm from walls, locomotor time 20.20.61.30.80.0-1.1
Bouts of movement, locomotor time 20.10.30.5-0.3-0.50.7
Total resting periods, locomotor time 20.10.30.5-0.2-0.50.7
Rest time, locomotor task time 20.71.31.91.31.4-0.4
Distance moved, locomotor task time 20.81.12.8-0.7-1.70.2
Vertical activity count, locomotor time 20.10.20.6-0.2-0.80.1
Light reinforcement 10.00.20.3-0.4-0.5-0.3
Light reinforcement 20.10.30.40.50.6-0.5
Bone: marrow area0.00.10.20.30.1-0.4
Bone: maximum diameter0.10.20.40.40.7-0.3
Bone: maximum force0.20.40.6-0.8-0.60.4
Bone: maximum moment0.10.20.3-0.6-0.40.4
Mean time between licks in bursts0.42.42.9-1.6-1.71.3
Mean num. licks in bursts1.12.94.81.82.2-0.8
Cd content in liver1.01.11.5-1.2-0.90.9
Co content in liver0.40.51.2-0.1-0.5-1.1
Cu content in liver3.03.54.3-1.9-1.62.1
Fe content in liver0.40.50.80.70.9-0.5
K content in liver0.40.40.8-0.50.20.9
Mg content in liver1.01.11.6-1.3-0.71.1
Mn content in liver0.30.30.80.30.90.2
Na content in liver0.10.10.2-0.30.20.4
Rb content in liver0.20.20.5-0.7-0.4-0.0
Se content in liver0.50.60.80.80.9-0.5
Sr content in liver1.81.52.21.31.5-0.8
Zn content in liver21.925.537.8-4.9-3.86.1
Bone: minimum diameter0.61.11.91.00.5-1.4
Time in familiar zone, hab. session 10.00.00.10.0-0.1-0.3
Time in novel zone, hab. session 10.20.20.30.60.4-0.3
Total zone transitions, hab. session 10.50.71.50.0-0.8-1.2
Total locomotion distance, hab. session 10.40.61.2-0.8-1.10.1
Locomotion velocity, hab. session 10.40.61.1-0.9-1.00.3
Time in familiar zone, hab. session 21.92.24.11.52.0-0.6
Time in novel zone, hab. session 21.31.41.9-1.4-1.40.7
Total zone transitions, hab. session 20.60.81.6-0.8-1.3-0.3
Total locomotion distance, hab. session 20.30.40.5-0.7-0.70.2
Locomotion velocity, hab. session 20.40.50.7-0.9-0.80.4
Novel to familiar place preference ratio0.10.10.2-0.4-0.40.4
Novelty place preference0.10.10.2-0.3-0.30.4
Time in novel zone, NPP test0.10.10.1-0.2-0.20.4
Total zone transitions, NPP test0.30.50.8-0.6-0.9-0.4
Total locomotion distance, NPP test0.91.31.9-1.4-1.20.9
Locomotion velocity, NPP test0.91.21.8-1.4-1.00.9
Intraocular pressure0.50.81.31.10.7-0.7
Delta distance traveled before/after self-admin1.61.82.6-1.3-1.61.0
Delta ambulatory time before/after self-admin1.22.22.7-1.5-1.61.2
Parametrial fat weight0.41.01.2-0.9-1.10.9
Pavlov. Cond. lever latency0.40.50.80.80.4-0.9
Pavlov. Cond. magazine entry latency0.10.20.40.40.2-0.6
Pavlov. Cond. change in total contacts0.60.61.1-1.1-0.70.5
Pavlov. Cond. index score0.10.10.2-0.4-0.00.5
Pavlov. Cond. latency score0.20.30.5-0.6-0.10.7
Pavlov. Cond. lever contacts0.40.50.7-0.8-0.40.9
Pavlov. Cond. magazine entry number0.10.10.30.00.10.5
Pavlov. Cond. intertrial magazine entries0.40.50.6-0.7-0.70.6
Pavlov. Cond. lever-magazine prob. diff.0.10.20.3-0.4-0.00.6
Pavlov. Cond. response bias0.10.10.2-0.5-0.50.0
Pavlov. Cond. lever latency0.00.10.10.30.30.2
Pavlov. Cond. magazine entry latency0.00.10.10.20.4-0.2
Pavlov. Cond. change in total contacts0.20.50.7-0.9-0.50.6
Pavlov. Cond. index score0.00.00.10.00.30.0
Pavlov. Cond. latency score0.10.10.2-0.4-0.10.4
Pavlov. Cond. lever contacts0.00.10.20.10.1-0.4
Pavlov. Cond. magazine entry number0.00.10.2-0.0-0.40.1
Pavlov. Cond. intertrial magazine entries0.20.40.80.60.9-0.1
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.10.30.1
Pavlov. Cond. response bias0.40.61.00.60.6-1.0
Time in closed arm before self-admin0.91.51.7-1.3-1.31.1
Time in closed arm after self-admin3.23.64.5-2.1-1.81.8
Time in open arm before self-admin0.50.61.40.71.2-0.2
Time in open arm after self-admin1.71.82.21.51.2-1.4
Bone: periosteal estimation0.40.90.90.90.9-1.0
Bone: periosteal perimeter0.91.72.01.31.2-1.4
Bone: post-yield work1.52.53.8-1.5-1.91.2
Progressive ratio test 1 active lever presses0.20.41.10.2-0.2-1.1
Progressive ratio test 1 breakpoint0.20.30.7-0.0-0.3-0.8
Progressive ratio test 1 inactive lever presses0.30.91.30.71.2-0.9
Progressive ratio test 2 active lever presses0.60.91.40.80.8-1.2
Progressive ratio test 2 breakpoint0.60.81.10.80.8-1.0
Progressive ratio test 2 inactive lever presses0.20.81.20.80.7-1.1
Incentive Sensitization - Responses0.10.20.30.40.5-0.2
Incentive Sensitization - Breakpoint0.10.30.50.60.7-0.3
Sum of active levers in priming session hrs 5-61.01.02.3-0.80.11.5
Progressive ratio1.33.95.12.22.3-1.3
Food seeking constrained by brief footshock0.00.00.1-0.30.10.0
Seeking ratio, punishment vs. effort1.32.83.6-1.9-1.91.2
Retroperitoneal fat weight0.10.30.40.50.7-0.5
Reaction time number correct0.00.20.20.50.4-0.3
Reaction time mean minus median0.21.42.11.21.5-0.8
Reaction time mean minus median AUC0.10.81.30.91.2-0.5
Reaction time num false alarms0.71.12.01.20.2-1.4
Reaction time num false alarms AUC0.92.13.61.60.5-1.9
Reaction time trials correct on left0.00.20.20.50.4-0.3
Reaction time trials on left0.10.20.30.60.5-0.3
Reaction time mean1.33.04.81.72.2-1.1
Reaction time mean AUC1.53.55.31.92.3-1.3
Median of all reaction times1.82.84.41.62.1-1.1
Reaction time omissions1.01.62.61.61.3-0.6
Reaction time false alarm rate0.60.81.51.00.2-1.2
Reaction time premature initiation rate0.81.22.41.00.5-1.6
Reaction time premature initiations0.72.23.81.40.9-1.9
Std. dev. reaction times0.31.11.91.11.4-0.6
Reaction time trials completed0.10.20.30.60.5-0.3
Reaction time trials AUC0.00.10.20.40.3-0.3
Run reversals in cocaine runway, females0.00.00.1-0.00.10.4
Run reversals in cocaine runway, males0.20.20.30.40.6-0.3
Latency to leave start box in cocaine runway1.11.51.8-1.3-1.11.2
Latency to leave start box in cocaine runway, F1.41.72.3-1.5-1.50.9
Latency to leave start box in cocaine runway, M0.50.51.2-0.40.21.1
Std. dev. time between licks in bursts3.66.710.8-2.4-3.31.9
Total sessions with >9 infusions0.81.01.7-1.1-1.30.1
Short access day 1 total inactive lever presses0.61.11.5-1.2-1.20.7
Short access day 10 total inactive lever presses0.00.10.1-0.20.00.4
Short access day 1 total infusions0.71.52.8-1.2-1.70.3
Short access day 10 total infusions0.10.10.3-0.5-0.3-0.1
Short access total infusions0.30.40.7-0.7-0.8-0.1
Short access day 1 locomotion2.13.65.3-2.0-2.31.1
Short access day 10 total locomotion0.20.91.3-1.2-0.51.0
Short access total locomotion1.01.62.5-1.6-0.91.1
One hour access (0.3 mA shock)0.10.10.2-0.10.40.2
Compulsive drug intake0.30.41.00.51.0-0.1
One hour access (shock baseline)0.00.00.10.10.3-0.2
Social response proportion0.20.20.40.60.3-0.2
Social responses0.10.10.4-0.10.00.6
Social time0.10.20.50.10.10.7
Soleus weight1.03.03.81.81.4-2.0
Bone: stiffness0.10.10.2-0.5-0.10.2
Tibialis anterior weight5.117.420.24.23.7-4.5
Time to tail flick, vehicle, before self-admin0.10.10.30.20.5-0.1
Time to tail flick, vehicle, after self-admin0.30.60.80.90.7-0.6
Time to tail flick, test, before self-admin0.30.30.70.50.8-0.1
Time to tail flick, test, after self-admin0.20.20.2-0.5-0.40.3
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.1-0.7-0.2
Delta time to tail flick, test, before/after SA0.40.51.0-0.7-1.00.1
Tibia length1.43.84.81.92.2-1.7
Ambulatory time before self-admin0.20.50.50.60.7-0.7
Ambulatory time after self-admin0.50.71.2-0.9-1.10.5
Bone: tissue strength1.31.41.8-1.2-1.30.9
Total heroin consumption0.10.10.2-0.10.50.4
Bone: trabecular number0.00.00.10.00.40.1
Bone: trabecular spacing0.20.30.8-0.4-0.10.9
Bone: trabecular thickness0.50.70.80.80.9-0.9
Bone: trabecular tissue density0.40.70.80.90.7-0.9
Water consumed over 24 hours0.00.00.1-0.40.00.1
Number of responses in last shaping day0.70.92.40.50.2-1.6