LOC134485824

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc intron excision ratio chr2_30467590_30469768 0.03 0.02 9.0e-05 0.03 0.01 0.03 0.03 2.2e-05 2.0e-03 1.6e-05 2.1e-05
2 PL intron excision ratio chr2_30467590_30478990 0.02 0.01 4.4e-03 0.03 0.02 0.02 0.02 2.5e-04 6.0e-03 3.0e-03 1.9e-03
3 NAcc intron excision ratio chr2_30467590_30478990 0.07 0.04 1.4e-12 0.08 0.06 0.06 0.07 1.0e-11 8.2e-10 3.8e-10 4.8e-11
4 Liver gene expression LOC134485824 0.06 0.03 1.4e-03 0.01 0.01 0.01 0.01 3.7e-02 9.7e-03 6.3e-02 5.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.30.5-0.4-0.3-0.5
Area under the delay curve0.71.12.4-1.21.50.90.1
BMI with tail1.44.95.8-2.42.32.02.0
BMI without tail0.94.66.5-2.51.82.12.1
Body weight2.08.613.1-3.63.33.01.1
Weight adjusted by age0.51.55.60.2-0.2-0.42.4
Bone surface0.10.10.3-0.20.60.2-0.3
Bone volume0.20.40.50.7-0.6-0.4-0.7
Breakpoint value in progressive ratio session0.10.10.30.10.3-0.2-0.5
Number of licking bursts0.10.30.7-0.8-0.30.00.5
Context. condit. distance diff. score0.91.11.80.9-1.4-1.20.6
Locomotion velocity, session 10.20.31.0-0.1-1.0-0.3-0.2
Locomotion distance, session 10.40.51.20.4-1.1-0.7-0.4
Locomotion velocity, session 20.30.31.0-0.2-1.00.4-0.4
Locomotion distance, session 21.01.43.00.7-1.7-1.2-0.8
Locomotion velocity, session 30.40.51.3-0.5-0.6-0.41.1
Locomotion distance, session 30.20.20.4-0.0-0.5-0.50.6
Stereotopy head waving bouts, day 30.50.61.10.5-0.4-1.0-1.1
Stereotopy head waving duration, day 30.40.51.3-0.10.80.1-1.1
Locomotion velocity, session 71.11.22.30.6-1.3-0.81.5
Locomotion distance, session 70.10.20.3-0.3-0.50.30.6
Stereotopy head waving bouts, day 70.70.82.00.2-0.8-1.40.8
Stereotopy head waving duration, day 70.30.30.8-0.0-0.1-0.70.9
Locomotion velocity, session 82.63.17.21.5-2.7-1.7-0.3
Locomotion distance, session 80.91.43.10.4-1.8-1.11.0
Degree of sensitization distance0.10.20.40.2-0.40.2-0.6
Degree of sensitization stereotypy0.91.02.10.2-0.7-1.21.4
Conditioned locomotion0.10.10.30.20.6-0.3-0.1
Cocaine response after cond. corrected0.30.50.8-0.90.40.90.5
Cocaine response after cond. not corrected0.50.71.1-1.00.31.00.8
Cocaine response before conditioning0.20.20.40.2-0.5-0.20.6
Saline control response0.30.40.9-0.30.50.60.9
Bone: connectivity density0.10.20.6-0.30.70.1-0.3
Bone: cortical apparent density1.62.64.31.5-1.8-2.10.7
Bone: cortical area1.72.86.62.6-0.6-1.8-1.1
Bone: cortical porosity0.10.10.1-0.40.3-0.10.0
Bone: cortical porosity0.20.20.50.3-0.3-0.7-0.3
Bone: cortical thickness2.64.38.12.8-1.3-2.7-0.5
Bone: cortical thickness0.20.20.70.3-0.00.20.8
Bone: cortical tissue density1.42.33.91.4-1.7-2.00.6
Condit. Reinf. active minus inactive responses0.91.03.5-0.4-0.6-0.21.9
Condit. Reinf. active-inactive response ratio0.80.93.3-0.0-0.4-0.41.8
Condit. Reinf. active responses0.91.13.6-0.8-0.60.21.9
Condit. Reinf. inactive responses0.20.30.5-0.7-0.20.70.4
Incentive salience index mean0.91.22.9-1.2-0.10.71.7
Condit. Reinf. lever presses0.30.51.0-1.00.10.70.6
Condit. Reinf. active minus inactive responses0.60.91.60.6-1.3-0.51.1
Condit. Reinf. active-inactive response ratio0.00.10.2-0.1-0.4-0.10.4
Condit. Reinf. active responses0.81.22.00.7-1.4-0.81.3
Condit. Reinf. inactive responses0.20.41.2-0.40.00.31.1
Condit. Reinf. lever presses0.30.51.10.5-1.1-0.30.7
Condit. Reinf. lever reinforcers received0.70.91.60.5-1.2-0.71.3
Conditioned reinforcement - actives0.20.72.0-0.61.40.80.1
Conditioned reinforcement - inactives0.10.30.60.8-0.4-0.6-0.3
Conditioned locomotion0.20.30.50.50.5-0.7-0.5
Patch foraging indifference point 0 sec0.72.03.8-1.61.02.00.8
Patch foraging indifference point AUC0.41.01.4-1.01.20.9-0.9
Delay disc. indifference point, 0s delay0.70.81.70.7-1.3-0.50.8
Delay disc. indifference point, 16s delay0.71.03.2-0.71.80.3-0.4
Delay disc. indifference point, 2s delay0.20.20.4-0.60.40.10.6
Delay disc. indifference point, 24s delay2.03.14.6-2.11.72.10.7
Delay disc. indifference point, 4s delay0.10.20.4-0.2-0.40.6-0.1
Delay disc. indifference point, 8s delay1.62.74.3-1.92.11.60.5
Indifference point function ln k0.00.10.50.2-0.2-0.00.7
Indifference point function log k0.00.10.50.2-0.2-0.00.7
Patch foraging total patch changes 0 sec0.72.24.1-1.71.12.00.8
Patch foraging total patch changes 12 sec1.21.62.5-1.61.31.40.6
Patch foraging total patch changes 18 sec0.20.50.7-0.90.50.80.5
Patch foraging total patch changes 24 sec0.51.72.6-1.41.61.40.6
Patch foraging total patch changes 6 sec1.62.74.6-2.01.42.10.4
Patch foraging time to switch 0 sec0.10.41.10.3-0.5-0.51.1
Patch foraging water rate 0 sec0.10.40.7-0.60.60.8-0.4
Patch foraging water rate 12 sec0.20.91.70.5-0.7-1.31.0
Patch foraging water rate 18 sec0.20.41.3-0.40.5-0.01.1
Patch foraging water rate 24 sec0.91.31.8-1.31.31.30.5
Patch foraging water rate 6 sec0.81.21.71.2-0.8-0.9-1.3
Seeking ratio, delayed vs. immediate footshock0.30.41.1-1.10.30.60.2
Distance traveled before self-admin0.20.50.9-0.91.00.10.2
Distance traveled after self-admin1.42.54.1-2.01.31.81.0
Extensor digitorum longus weight0.10.20.5-0.20.60.1-0.7
Bone: elastic displacement1.62.03.51.2-0.6-1.6-1.9
Bone: elastic work1.31.74.61.0-0.0-1.1-2.2
Bone: endosteal estimation0.20.41.1-0.50.51.0-0.2
Bone: endosteal perimeter0.00.10.20.30.10.40.0
Epididymis fat weight1.25.89.5-3.12.32.12.0
Delta time in closed arm before/after self-admin0.70.71.50.70.1-1.2-0.9
Delta time in open arm before/after self-admin1.41.65.90.0-0.70.02.4
Diff in mean of infusions in LGA sessions0.71.22.91.1-0.1-0.9-1.7
Delay discount exponential model param1.01.32.51.3-1.6-1.0-0.1
Extinction: sum of active levers before priming0.40.62.4-0.40.1-0.11.5
Active lever presses in extinction session 60.80.82.3-0.81.50.2-0.4
Bone: final force0.71.12.41.5-0.7-0.9-0.7
Bone: final moment0.50.81.81.3-0.5-0.9-0.8
Food consumed during 24 hour testing period0.91.76.0-0.9-0.10.22.5
Glucose2.23.56.42.1-2.5-1.8-0.2
Heart weight1.82.94.5-2.11.71.11.8
Delay discount hyperbolic model param0.81.01.81.2-1.3-0.9-0.1
Intermittent access intake day 1-15 change0.21.01.41.1-1.2-1.1-0.5
Intermittent access intake escalation0.21.21.81.3-1.3-1.2-0.5
Intermittent access intake escalation 20.50.81.51.2-0.6-0.9-0.7
Intermitt. access day 1 inactive lever presses0.33.65.42.3-1.6-2.3-1.1
Intermitt. access day 15 inactive lever presses0.63.04.81.5-2.2-2.2-0.4
Intermitt. access escalation Index0.31.12.51.2-1.6-0.6-0.1
Intermittent access day 1 total infusions1.23.76.4-2.52.31.31.1
Intermittent access day 15 total infusions0.10.20.7-0.5-0.0-0.20.8
Intermittent access terminal intake (last 3 days)0.10.20.4-0.60.4-0.40.5
Intermittent access total infusions0.80.91.8-1.30.90.41.0
Intermittent access day 1 locomotion0.81.53.5-1.51.90.60.0
Intermittent access day 15 total locomotion0.51.94.5-1.62.10.50.5
Intermittent access total locomotion0.91.02.7-1.21.6-0.00.1
Intermittent access standard deviation0.10.40.5-0.60.4-0.70.7
Left kidney weight3.124.636.0-6.05.45.03.0
Right kidney weight3.323.033.0-5.75.24.92.8
Cocaine induced anxiety0.10.30.9-0.21.00.20.1
Post-drug Anxiety1.11.33.0-1.21.70.70.4
Baseline Anxiety0.20.41.5-1.20.30.2-0.0
Tail length0.63.45.6-2.31.52.40.6
Length with tail1.35.78.1-2.82.62.9-0.1
Length without tail0.63.04.4-1.92.02.1-0.1
Times rat made contact with spout3.03.48.3-1.81.01.12.9
Lifetime Intake1.01.22.7-1.61.20.50.8
Liver weight, left3.15.46.9-2.41.72.42.6
Liver weight, right2.23.95.4-2.31.92.21.3
Locomotor activity0.50.82.8-0.7-0.10.01.7
Locomotor testing distance1.12.88.6-1.10.80.92.9
Locomotor testing rearing0.62.26.9-0.70.80.82.6
Locomotion in novel chamber0.20.20.7-0.20.0-0.80.4
Locomotion in novel chamber post-restriction0.20.71.6-0.80.10.7-1.3
Fecal boli incidents, locomotor time 10.20.51.50.20.4-0.5-1.2
Change in fecal boli incidents, locomotor task0.00.00.1-0.1-0.30.10.2
Time >=10cm from walls, locomotor time 11.62.05.80.90.6-1.0-2.4
Bouts of movement, locomotor time 10.50.61.10.6-0.90.31.1
Total resting periods, locomotor time 10.40.40.60.6-0.80.50.7
Rest time, locomotor task time 10.30.51.5-0.0-1.2-0.60.3
Distance moved, locomotor task time 10.30.81.1-0.51.10.90.9
Vertical activity count, locomotor time 10.10.40.60.10.80.70.7
Time >=10cm from walls, locomotor time 20.10.40.6-0.70.80.4-0.3
Bouts of movement, locomotor time 20.00.00.1-0.20.1-0.0-0.2
Total resting periods, locomotor time 20.00.00.1-0.1-0.2-0.3-0.1
Rest time, locomotor task time 21.01.63.01.0-1.4-1.70.8
Distance moved, locomotor task time 21.31.82.1-1.31.21.41.4
Vertical activity count, locomotor time 20.41.01.7-1.00.60.91.3
Light reinforcement 10.41.93.2-1.31.51.80.6
Light reinforcement 20.40.92.5-0.91.60.2-0.7
Bone: marrow area0.20.41.0-0.50.51.0-0.2
Bone: maximum diameter0.20.30.70.50.80.2-0.6
Bone: maximum force0.20.51.31.1-0.4-0.6-0.2
Bone: maximum moment0.20.30.91.0-0.2-0.5-0.4
Mean time between licks in bursts0.10.40.90.10.70.4-0.9
Mean num. licks in bursts0.30.71.9-0.00.80.51.4
Cd content in liver0.40.51.10.6-0.5-0.31.0
Co content in liver0.81.03.0-0.60.20.71.7
Cu content in liver0.00.00.10.10.0-0.30.1
Fe content in liver1.21.42.01.4-1.3-1.1-0.9
K content in liver1.11.11.8-1.10.91.30.6
Mg content in liver0.50.61.00.9-0.7-1.0-0.3
Mn content in liver2.32.63.71.9-1.9-1.7-0.6
Na content in liver0.70.81.3-0.91.01.10.3
Rb content in liver0.10.10.30.20.1-0.20.6
Se content in liver1.21.42.81.2-1.7-1.20.2
Sr content in liver0.20.10.50.1-0.30.7-0.1
Zn content in liver0.10.10.3-0.40.4-0.10.5
Bone: minimum diameter2.85.49.73.1-2.0-2.5-1.2
Time in familiar zone, hab. session 10.10.20.3-0.60.5-0.1-0.1
Time in novel zone, hab. session 10.80.91.6-0.50.41.31.2
Total zone transitions, hab. session 10.30.41.10.2-1.1-0.5-0.3
Total locomotion distance, hab. session 10.50.71.00.8-0.9-0.6-1.0
Locomotion velocity, hab. session 11.01.42.41.1-1.0-0.9-1.5
Time in familiar zone, hab. session 21.31.53.0-1.31.71.00.6
Time in novel zone, hab. session 20.20.20.60.1-0.8-0.10.5
Total zone transitions, hab. session 20.30.41.3-1.1-0.10.60.2
Total locomotion distance, hab. session 20.10.10.30.0-0.5-0.4-0.1
Locomotion velocity, hab. session 20.10.10.4-0.1-0.6-0.3-0.2
Novel to familiar place preference ratio0.10.20.30.5-0.2-0.50.3
Novelty place preference0.10.20.30.5-0.2-0.40.6
Time in novel zone, NPP test0.20.20.30.6-0.2-0.50.5
Total zone transitions, NPP test0.30.41.1-0.1-1.1-0.4-0.6
Total locomotion distance, NPP test1.41.92.71.1-1.6-1.6-1.1
Locomotion velocity, NPP test1.21.72.61.0-1.6-1.5-1.1
Intraocular pressure1.72.74.81.6-2.2-1.8-0.4
Delta distance traveled before/after self-admin1.01.12.8-1.10.51.70.7
Delta ambulatory time before/after self-admin0.91.63.0-1.20.31.71.3
Parametrial fat weight0.10.30.6-0.50.40.40.8
Pavlov. Cond. lever latency0.30.40.70.9-0.7-0.60.3
Pavlov. Cond. magazine entry latency2.73.56.2-2.01.82.50.4
Pavlov. Cond. change in total contacts0.60.61.5-0.60.71.20.2
Pavlov. Cond. index score1.62.03.3-1.61.51.80.1
Pavlov. Cond. latency score1.21.62.4-1.41.51.5-0.1
Pavlov. Cond. lever contacts0.10.10.3-0.30.30.4-0.5
Pavlov. Cond. magazine entry number5.06.310.72.7-2.4-3.3-1.3
Pavlov. Cond. intertrial magazine entries0.70.81.40.9-1.2-1.0-0.4
Pavlov. Cond. lever-magazine prob. diff.1.31.72.9-1.41.31.70.1
Pavlov. Cond. response bias2.73.45.9-2.01.72.40.7
Pavlov. Cond. lever latency0.40.51.1-0.30.9-0.1-1.1
Pavlov. Cond. magazine entry latency1.72.53.5-1.41.11.81.9
Pavlov. Cond. change in total contacts0.10.20.60.5-0.8-0.10.3
Pavlov. Cond. index score0.50.82.4-0.4-0.10.91.5
Pavlov. Cond. latency score0.81.23.2-0.70.21.11.8
Pavlov. Cond. lever contacts0.50.71.40.5-1.1-0.11.2
Pavlov. Cond. magazine entry number0.91.22.10.8-0.8-1.2-1.4
Pavlov. Cond. intertrial magazine entries0.40.92.10.9-0.4-0.7-1.5
Pavlov. Cond. lever-magazine prob. diff.0.71.03.1-0.5-0.10.81.8
Pavlov. Cond. response bias0.30.41.20.3-0.60.21.1
Time in closed arm before self-admin0.81.52.41.3-1.6-0.7-1.2
Time in closed arm after self-admin1.41.62.61.2-1.0-1.2-1.6
Time in open arm before self-admin2.83.45.5-2.32.31.70.5
Time in open arm after self-admin3.64.07.9-2.00.91.92.8
Bone: periosteal estimation0.30.71.81.4-0.1-0.6-0.8
Bone: periosteal perimeter0.51.02.41.60.1-0.6-1.2
Bone: post-yield work0.10.20.5-0.20.40.7-0.5
Progressive ratio test 1 active lever presses0.20.41.0-1.00.60.30.2
Progressive ratio test 1 breakpoint0.20.30.8-0.90.50.20.2
Progressive ratio test 1 inactive lever presses0.10.20.5-0.70.30.1-0.3
Progressive ratio test 2 active lever presses1.01.52.6-1.61.20.91.1
Progressive ratio test 2 breakpoint1.01.32.4-1.51.00.81.1
Progressive ratio test 2 inactive lever presses0.20.50.8-0.90.80.50.6
Incentive Sensitization - Responses0.61.82.5-1.30.71.51.6
Incentive Sensitization - Breakpoint0.81.72.6-1.30.71.41.6
Sum of active levers in priming session hrs 5-60.10.10.2-0.40.40.2-0.2
Progressive ratio0.31.02.6-0.0-1.00.51.6
Food seeking constrained by brief footshock1.01.32.5-1.60.71.40.4
Seeking ratio, punishment vs. effort0.51.11.7-0.81.30.5-1.3
Retroperitoneal fat weight0.52.24.0-1.80.71.02.0
Reaction time number correct0.20.91.50.8-1.2-1.1-0.1
Reaction time mean minus median0.10.40.90.4-1.0-0.7-0.3
Reaction time mean minus median AUC0.00.10.20.0-0.4-0.3-0.2
Reaction time num false alarms0.10.20.5-0.30.70.4-0.0
Reaction time num false alarms AUC0.20.51.4-0.61.20.6-0.0
Reaction time trials correct on left0.20.91.50.8-1.2-1.1-0.1
Reaction time trials on left0.31.11.90.9-1.4-1.3-0.0
Reaction time mean1.43.05.01.8-2.2-1.90.4
Reaction time mean AUC0.92.33.81.5-1.9-1.70.2
Median of all reaction times1.72.63.81.8-2.0-1.80.5
Reaction time omissions1.93.05.31.4-2.0-2.30.8
Reaction time false alarm rate1.01.32.8-1.01.71.2-0.0
Reaction time premature initiation rate2.33.65.1-2.22.02.30.6
Reaction time premature initiations0.41.11.8-1.30.91.20.5
Std. dev. reaction times0.51.63.21.0-1.8-1.5-0.1
Reaction time trials completed0.31.11.90.9-1.4-1.3-0.0
Reaction time trials AUC0.31.21.91.0-1.4-1.30.1
Run reversals in cocaine runway, females0.70.71.5-0.50.8-0.7-1.2
Run reversals in cocaine runway, males0.50.61.70.40.0-0.7-1.3
Latency to leave start box in cocaine runway1.01.43.80.8-0.9-0.3-2.0
Latency to leave start box in cocaine runway, F0.50.61.70.6-0.50.3-1.3
Latency to leave start box in cocaine runway, M0.60.61.50.4-0.4-0.7-1.2
Std. dev. time between licks in bursts0.71.31.9-1.21.41.2-0.3
Total sessions with >9 infusions0.70.82.3-1.50.80.40.5
Short access day 1 total inactive lever presses0.20.41.2-1.10.50.20.2
Short access day 10 total inactive lever presses0.21.22.21.3-1.5-0.6-0.9
Short access day 1 total infusions0.10.20.7-0.90.40.2-0.1
Short access day 10 total infusions0.20.30.4-0.60.7-0.60.2
Short access total infusions0.60.92.4-1.50.90.30.2
Short access day 1 locomotion0.10.20.5-0.70.5-0.10.2
Short access day 10 total locomotion0.83.37.81.4-1.4-2.8-1.1
Short access total locomotion0.40.51.7-0.20.3-1.3-0.5
One hour access (0.3 mA shock)0.81.01.7-1.31.30.40.5
Compulsive drug intake0.10.20.4-0.2-0.60.4-0.2
One hour access (shock baseline)0.10.30.7-0.50.9-0.10.5
Social response proportion6.07.610.82.7-2.6-3.3-2.3
Social responses1.41.93.21.3-1.5-1.8-0.6
Social time0.50.71.50.7-1.2-0.8-0.4
Soleus weight0.71.93.8-0.81.60.9-1.9
Bone: stiffness0.10.20.50.4-0.30.20.7
Tibialis anterior weight2.06.89.72.4-2.5-3.1-2.3
Time to tail flick, vehicle, before self-admin0.10.10.20.40.30.1-0.4
Time to tail flick, vehicle, after self-admin0.10.31.00.21.00.10.1
Time to tail flick, test, before self-admin0.40.51.30.4-0.5-1.20.5
Time to tail flick, test, after self-admin0.90.91.61.0-1.3-1.00.1
Delta time to tail flick, vehicle, before/after SA0.10.10.10.00.3-0.20.3
Delta time to tail flick, test, before/after SA0.30.41.00.6-0.50.1-1.0
Tibia length0.10.20.20.30.50.3-0.4
Ambulatory time before self-admin0.10.40.9-0.80.90.20.2
Ambulatory time after self-admin0.71.11.6-1.10.51.31.1
Bone: tissue strength0.40.40.90.9-0.4-0.5-0.5
Total heroin consumption0.70.91.61.3-0.5-0.8-0.9
Bone: trabecular number0.00.00.10.0-0.10.30.1
Bone: trabecular spacing0.81.21.51.2-1.2-1.20.3
Bone: trabecular thickness1.92.63.81.7-1.3-1.4-2.0
Bone: trabecular tissue density0.20.30.5-0.4-0.7-0.40.7
Water consumed over 24 hours2.54.811.6-2.30.91.33.4
Number of responses in last shaping day0.91.22.5-1.61.20.50.8