LOC134485824

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc intron excision ratio chr2_30467590_30469768 0.03 0.02 9.0e-05 0.03 0.01 0.03 0.03 2.2e-05 2.0e-03 1.6e-05 2.2e-05
2 PL intron excision ratio chr2_30467590_30478990 0.02 0.01 4.4e-03 0.03 0.02 0.02 0.02 2.5e-04 6.0e-03 3.0e-03 1.8e-03
3 NAcc intron excision ratio chr2_30467590_30478990 0.07 0.04 1.4e-12 0.08 0.06 0.06 0.07 1.0e-11 8.2e-10 4.9e-10 5.0e-11
4 Liver gene expression LOC134485824 0.06 0.03 1.4e-03 0.01 0.01 0.01 0.01 3.7e-02 9.7e-03 6.3e-02 5.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.3-0.50.40.3-0.5
Area under the delay curve1.01.12.41.2-1.5-0.90.1
BMI with tail1.44.95.82.4-2.3-2.02.0
BMI without tail1.54.66.52.5-1.8-2.12.1
Body weight2.08.613.13.6-3.3-3.01.1
Weight adjusted by age1.01.55.6-0.20.20.42.4
Bone surface0.10.10.30.2-0.6-0.2-0.3
Bone volume0.20.40.5-0.70.60.4-0.7
Breakpoint value in progressive ratio session0.10.10.3-0.1-0.30.2-0.5
Number of licking bursts0.20.30.70.80.3-0.00.5
Context. condit. distance diff. score0.91.11.8-0.91.41.20.6
Locomotion velocity, session 10.30.31.00.11.00.3-0.2
Locomotion distance, session 10.40.51.2-0.41.10.7-0.4
Locomotion velocity, session 20.30.31.00.21.0-0.4-0.4
Locomotion distance, session 21.01.43.0-0.71.71.2-0.8
Locomotion velocity, session 30.40.51.30.50.60.41.1
Locomotion distance, session 30.20.20.40.00.50.50.6
Stereotopy head waving bouts, day 30.50.61.1-0.50.41.0-1.1
Stereotopy head waving duration, day 30.40.51.30.1-0.8-0.1-1.1
Locomotion velocity, session 71.11.22.3-0.61.30.81.5
Locomotion distance, session 70.10.20.30.30.5-0.30.6
Stereotopy head waving bouts, day 70.70.82.0-0.20.81.40.8
Stereotopy head waving duration, day 70.30.30.80.00.10.70.9
Locomotion velocity, session 82.63.17.2-1.52.71.7-0.3
Locomotion distance, session 80.91.43.1-0.41.81.11.0
Degree of sensitization distance0.10.20.4-0.20.4-0.2-0.6
Degree of sensitization stereotypy0.91.02.1-0.20.71.21.4
Conditioned locomotion0.10.10.3-0.2-0.60.3-0.1
Cocaine response after cond. corrected0.40.50.80.9-0.4-0.90.5
Cocaine response after cond. not corrected0.60.71.11.0-0.3-1.00.8
Cocaine response before conditioning0.20.20.4-0.20.50.20.6
Saline control response0.30.40.90.3-0.5-0.60.9
Bone: connectivity density0.10.20.60.3-0.7-0.1-0.3
Bone: cortical apparent density1.92.64.3-1.51.82.10.7
Bone: cortical area1.82.86.6-2.60.61.8-1.1
Bone: cortical porosity0.10.10.10.4-0.30.10.0
Bone: cortical porosity0.20.20.5-0.30.30.7-0.3
Bone: cortical thickness2.64.38.1-2.81.32.7-0.5
Bone: cortical thickness0.20.20.7-0.30.0-0.20.8
Bone: cortical tissue density1.72.33.9-1.41.72.00.6
Condit. Reinf. active minus inactive responses0.91.03.50.40.60.21.9
Condit. Reinf. active-inactive response ratio0.80.93.30.00.40.41.8
Condit. Reinf. active responses0.91.13.60.80.6-0.21.9
Condit. Reinf. inactive responses0.20.30.50.70.2-0.70.4
Incentive salience index mean1.01.22.91.20.1-0.71.7
Condit. Reinf. lever presses0.30.51.01.0-0.1-0.70.6
Condit. Reinf. active minus inactive responses0.70.91.6-0.61.30.51.1
Condit. Reinf. active-inactive response ratio0.10.10.20.10.40.10.4
Condit. Reinf. active responses0.91.22.0-0.71.40.81.3
Condit. Reinf. inactive responses0.30.41.20.4-0.0-0.31.1
Condit. Reinf. lever presses0.40.51.1-0.51.10.30.7
Condit. Reinf. lever reinforcers received0.70.91.6-0.51.20.71.3
Conditioned reinforcement - actives0.40.72.00.6-1.4-0.80.1
Conditioned reinforcement - inactives0.20.30.6-0.80.40.6-0.3
Conditioned locomotion0.20.30.5-0.5-0.50.7-0.5
Patch foraging indifference point 0 sec1.12.03.81.6-1.0-2.00.8
Patch foraging indifference point AUC0.71.01.41.0-1.2-0.9-0.9
Delay disc. indifference point, 0s delay0.70.81.7-0.71.30.50.8
Delay disc. indifference point, 16s delay0.91.03.20.7-1.8-0.3-0.4
Delay disc. indifference point, 2s delay0.20.20.40.6-0.4-0.10.6
Delay disc. indifference point, 24s delay2.83.14.62.1-1.7-2.10.7
Delay disc. indifference point, 4s delay0.10.20.40.20.4-0.6-0.1
Delay disc. indifference point, 8s delay2.32.74.31.9-2.1-1.60.5
Indifference point function ln k0.10.10.5-0.20.20.00.7
Indifference point function log k0.10.10.5-0.20.20.00.7
Patch foraging total patch changes 0 sec1.22.24.11.7-1.1-2.00.8
Patch foraging total patch changes 12 sec1.31.62.51.6-1.3-1.40.6
Patch foraging total patch changes 18 sec0.30.50.70.9-0.5-0.80.5
Patch foraging total patch changes 24 sec1.01.72.61.4-1.6-1.40.6
Patch foraging total patch changes 6 sec1.72.74.62.0-1.4-2.10.4
Patch foraging time to switch 0 sec0.20.41.1-0.30.50.51.1
Patch foraging water rate 0 sec0.20.40.70.6-0.6-0.8-0.4
Patch foraging water rate 12 sec0.40.91.7-0.50.71.31.0
Patch foraging water rate 18 sec0.30.41.30.4-0.50.01.1
Patch foraging water rate 24 sec0.91.31.81.3-1.3-1.30.5
Patch foraging water rate 6 sec0.81.21.7-1.20.80.9-1.3
Seeking ratio, delayed vs. immediate footshock0.30.41.11.1-0.3-0.60.2
Distance traveled before self-admin0.40.50.90.9-1.0-0.10.2
Distance traveled after self-admin2.02.54.12.0-1.3-1.81.0
Extensor digitorum longus weight0.10.20.50.2-0.6-0.1-0.7
Bone: elastic displacement1.72.03.5-1.20.61.6-1.9
Bone: elastic work1.31.74.6-1.00.01.1-2.2
Bone: endosteal estimation0.20.41.10.5-0.5-1.0-0.2
Bone: endosteal perimeter0.00.10.2-0.3-0.1-0.40.0
Epididymis fat weight1.75.89.53.1-2.3-2.12.0
Delta time in closed arm before/after self-admin0.70.71.5-0.7-0.11.2-0.9
Delta time in open arm before/after self-admin1.61.65.9-0.00.7-0.02.4
Diff in mean of infusions in LGA sessions1.01.22.9-1.10.10.9-1.7
Delay discount exponential model param1.21.32.5-1.31.61.0-0.1
Extinction: sum of active levers before priming0.60.62.40.4-0.10.11.5
Active lever presses in extinction session 60.80.82.30.8-1.5-0.2-0.4
Bone: final force0.71.12.3-1.50.70.9-0.7
Bone: final moment0.50.81.8-1.30.50.9-0.8
Food consumed during 24 hour testing period1.21.76.00.90.1-0.22.5
Glucose2.33.56.4-2.12.51.8-0.2
Heart weight1.92.94.52.1-1.7-1.11.8
Delay discount hyperbolic model param0.91.01.8-1.21.30.9-0.1
Intermittent access intake day 1-15 change0.51.01.4-1.11.21.1-0.5
Intermittent access intake escalation0.61.21.8-1.31.31.2-0.5
Intermittent access intake escalation 20.70.81.5-1.20.60.9-0.7
Intermitt. access day 1 inactive lever presses1.03.65.4-2.31.62.3-1.1
Intermitt. access day 15 inactive lever presses1.53.04.8-1.52.22.2-0.4
Intermitt. access escalation Index0.81.12.5-1.21.60.6-0.1
Intermittent access day 1 total infusions2.33.76.42.5-2.3-1.31.1
Intermittent access day 15 total infusions0.20.20.70.50.00.20.8
Intermittent access terminal intake (last 3 days)0.20.20.40.6-0.40.40.5
Intermittent access total infusions0.80.91.81.3-0.9-0.41.0
Intermittent access day 1 locomotion1.21.53.51.5-1.9-0.60.0
Intermittent access day 15 total locomotion1.01.94.51.6-2.1-0.50.5
Intermittent access total locomotion0.91.02.71.2-1.60.00.1
Intermittent access standard deviation0.20.40.50.6-0.40.70.7
Left kidney weight5.324.636.06.0-5.4-5.03.0
Right kidney weight5.023.033.05.7-5.2-4.92.8
Cocaine induced anxiety0.20.30.90.2-1.0-0.20.1
Post-drug Anxiety1.21.33.01.2-1.7-0.70.4
Baseline Anxiety0.30.41.51.2-0.3-0.2-0.0
Tail length0.93.45.62.3-1.5-2.40.6
Length with tail1.35.78.12.8-2.6-2.9-0.1
Length without tail0.93.04.41.9-2.0-2.1-0.1
Times rat made contact with spout3.03.48.31.8-1.0-1.12.9
Lifetime Intake1.01.22.71.6-1.2-0.50.8
Liver weight, left3.35.46.92.4-1.7-2.42.6
Liver weight, right2.23.95.42.3-1.9-2.21.3
Locomotor activity0.50.82.80.70.1-0.01.7
Locomotor testing distance1.62.88.61.1-0.8-0.92.9
Locomotor testing rearing1.12.26.90.7-0.8-0.82.6
Locomotion in novel chamber0.20.20.70.2-0.00.80.4
Locomotion in novel chamber post-restriction0.40.71.60.8-0.1-0.7-1.3
Fecal boli incidents, locomotor time 10.30.51.5-0.2-0.40.5-1.2
Change in fecal boli incidents, locomotor task0.00.00.10.10.3-0.10.2
Time >=10cm from walls, locomotor time 11.92.05.8-0.9-0.61.0-2.4
Bouts of movement, locomotor time 10.50.61.1-0.60.9-0.31.1
Total resting periods, locomotor time 10.40.40.6-0.60.8-0.50.7
Rest time, locomotor task time 10.40.51.50.01.20.60.3
Distance moved, locomotor task time 10.50.81.10.5-1.1-0.90.9
Vertical activity count, locomotor time 10.20.40.6-0.1-0.8-0.70.7
Time >=10cm from walls, locomotor time 20.20.40.60.7-0.8-0.4-0.3
Bouts of movement, locomotor time 20.00.00.10.2-0.10.0-0.2
Total resting periods, locomotor time 20.00.00.10.10.20.3-0.1
Rest time, locomotor task time 21.31.63.0-1.01.41.70.8
Distance moved, locomotor task time 21.51.82.11.3-1.2-1.41.4
Vertical activity count, locomotor time 20.71.01.71.0-0.6-0.91.3
Light reinforcement 10.81.93.21.3-1.5-1.80.6
Light reinforcement 20.60.92.50.9-1.6-0.2-0.7
Bone: marrow area0.20.41.00.5-0.5-1.0-0.2
Bone: maximum diameter0.20.30.7-0.5-0.8-0.2-0.6
Bone: maximum force0.30.51.3-1.10.40.6-0.2
Bone: maximum moment0.20.30.9-1.00.20.5-0.4
Mean time between licks in bursts0.20.40.9-0.1-0.7-0.4-0.9
Mean num. licks in bursts0.40.71.90.0-0.8-0.51.4
Cd content in liver0.40.51.1-0.60.50.31.0
Co content in liver0.81.03.00.6-0.2-0.71.7
Cu content in liver0.00.00.1-0.1-0.00.30.1
Fe content in liver1.21.42.0-1.41.31.1-0.9
K content in liver1.11.11.81.1-0.9-1.30.6
Mg content in liver0.60.61.0-0.90.71.0-0.3
Mn content in liver2.42.63.7-1.91.91.7-0.6
Na content in liver0.80.81.30.9-1.0-1.10.3
Rb content in liver0.10.10.3-0.2-0.10.20.6
Se content in liver1.21.42.8-1.21.71.20.2
Sr content in liver0.20.10.5-0.10.3-0.7-0.1
Zn content in liver0.10.10.30.4-0.40.10.5
Bone: minimum diameter2.95.49.7-3.12.02.5-1.2
Time in familiar zone, hab. session 10.20.20.30.6-0.50.1-0.1
Time in novel zone, hab. session 10.90.91.60.5-0.4-1.31.2
Total zone transitions, hab. session 10.30.41.1-0.21.10.5-0.3
Total locomotion distance, hab. session 10.50.71.0-0.80.90.6-1.0
Locomotion velocity, hab. session 11.01.42.4-1.11.00.9-1.5
Time in familiar zone, hab. session 21.41.53.01.3-1.7-1.00.6
Time in novel zone, hab. session 20.20.20.6-0.10.80.10.5
Total zone transitions, hab. session 20.30.41.31.10.1-0.60.2
Total locomotion distance, hab. session 20.10.10.3-0.00.50.4-0.1
Locomotion velocity, hab. session 20.10.10.40.10.60.3-0.2
Novel to familiar place preference ratio0.20.20.3-0.50.20.50.3
Novelty place preference0.20.20.3-0.50.20.40.6
Time in novel zone, NPP test0.20.20.3-0.60.20.50.5
Total zone transitions, NPP test0.30.41.10.11.10.4-0.6
Total locomotion distance, NPP test1.41.92.7-1.11.61.6-1.1
Locomotion velocity, NPP test1.21.72.6-1.01.61.5-1.1
Intraocular pressure1.92.74.8-1.62.21.8-0.4
Delta distance traveled before/after self-admin1.11.12.81.1-0.5-1.70.7
Delta ambulatory time before/after self-admin1.31.63.01.2-0.3-1.71.3
Parametrial fat weight0.10.30.60.5-0.4-0.40.8
Pavlov. Cond. lever latency0.40.40.7-0.90.70.60.3
Pavlov. Cond. magazine entry latency2.73.56.22.0-1.8-2.50.4
Pavlov. Cond. change in total contacts0.60.61.50.6-0.7-1.20.2
Pavlov. Cond. index score1.62.03.31.6-1.5-1.80.1
Pavlov. Cond. latency score1.31.62.41.4-1.5-1.5-0.1
Pavlov. Cond. lever contacts0.10.10.30.3-0.3-0.4-0.5
Pavlov. Cond. magazine entry number5.06.310.7-2.72.43.3-1.3
Pavlov. Cond. intertrial magazine entries0.70.81.4-0.91.21.0-0.4
Pavlov. Cond. lever-magazine prob. diff.1.31.72.91.4-1.3-1.70.1
Pavlov. Cond. response bias2.73.45.92.0-1.7-2.40.7
Pavlov. Cond. lever latency0.40.51.10.3-0.90.1-1.1
Pavlov. Cond. magazine entry latency2.02.53.51.4-1.1-1.81.9
Pavlov. Cond. change in total contacts0.20.20.6-0.50.80.10.3
Pavlov. Cond. index score0.60.82.40.40.1-0.91.5
Pavlov. Cond. latency score0.91.23.20.7-0.2-1.11.8
Pavlov. Cond. lever contacts0.50.71.4-0.41.10.11.2
Pavlov. Cond. magazine entry number1.01.22.1-0.80.81.2-1.4
Pavlov. Cond. intertrial magazine entries0.60.92.1-0.90.40.7-1.5
Pavlov. Cond. lever-magazine prob. diff.0.81.03.10.50.1-0.81.8
Pavlov. Cond. response bias0.30.41.2-0.30.6-0.21.1
Time in closed arm before self-admin1.11.52.4-1.31.60.7-1.2
Time in closed arm after self-admin1.51.62.6-1.21.01.2-1.6
Time in open arm before self-admin3.23.45.52.3-2.3-1.70.5
Time in open arm after self-admin3.74.07.92.0-0.9-1.92.8
Bone: periosteal estimation0.40.71.8-1.40.10.6-0.8
Bone: periosteal perimeter0.61.02.4-1.6-0.10.6-1.2
Bone: post-yield work0.20.20.50.2-0.4-0.7-0.5
Progressive ratio test 1 active lever presses0.30.41.01.0-0.6-0.30.2
Progressive ratio test 1 breakpoint0.20.30.80.9-0.5-0.20.2
Progressive ratio test 1 inactive lever presses0.10.20.50.7-0.3-0.1-0.3
Progressive ratio test 2 active lever presses1.31.52.61.6-1.2-0.91.1
Progressive ratio test 2 breakpoint1.11.32.41.5-1.0-0.81.1
Progressive ratio test 2 inactive lever presses0.30.50.80.9-0.8-0.50.6
Incentive Sensitization - Responses1.21.82.51.3-0.7-1.51.6
Incentive Sensitization - Breakpoint1.31.72.61.3-0.7-1.41.6
Sum of active levers in priming session hrs 5-60.10.10.20.4-0.4-0.2-0.2
Progressive ratio0.61.02.60.01.0-0.51.6
Food seeking constrained by brief footshock1.01.32.51.6-0.7-1.40.4
Seeking ratio, punishment vs. effort0.71.11.70.8-1.3-0.5-1.3
Retroperitoneal fat weight0.52.24.01.8-0.7-1.02.0
Reaction time number correct0.50.91.5-0.81.21.1-0.1
Reaction time mean minus median0.20.40.9-0.41.00.7-0.3
Reaction time mean minus median AUC0.00.10.2-0.00.40.3-0.2
Reaction time num false alarms0.10.20.50.3-0.7-0.4-0.0
Reaction time num false alarms AUC0.30.51.40.6-1.2-0.6-0.0
Reaction time trials correct on left0.50.91.5-0.81.21.1-0.1
Reaction time trials on left0.61.11.9-0.91.41.3-0.0
Reaction time mean1.93.05.0-1.82.21.90.4
Reaction time mean AUC1.42.33.8-1.51.91.70.2
Median of all reaction times1.92.63.8-1.82.01.80.5
Reaction time omissions2.13.05.3-1.42.02.30.8
Reaction time false alarm rate1.01.32.81.0-1.7-1.2-0.0
Reaction time premature initiation rate2.63.65.12.2-2.0-2.30.6
Reaction time premature initiations0.61.11.81.3-0.9-1.20.5
Std. dev. reaction times0.91.63.2-1.01.81.5-0.1
Reaction time trials completed0.61.11.9-0.91.41.3-0.0
Reaction time trials AUC0.61.21.9-1.01.41.30.1
Run reversals in cocaine runway, females0.70.71.50.5-0.80.7-1.2
Run reversals in cocaine runway, males0.60.61.7-0.4-0.00.7-1.3
Latency to leave start box in cocaine runway1.21.43.8-0.90.90.3-2.0
Latency to leave start box in cocaine runway, F0.50.61.7-0.60.5-0.3-1.3
Latency to leave start box in cocaine runway, M0.60.61.5-0.40.40.7-1.2
Std. dev. time between licks in bursts0.91.31.91.2-1.4-1.2-0.3
Total sessions with >9 infusions0.70.82.31.5-0.8-0.40.5
Short access day 1 total inactive lever presses0.30.41.21.1-0.5-0.20.2
Short access day 10 total inactive lever presses0.51.22.2-1.31.50.6-0.9
Short access day 1 total infusions0.20.20.70.9-0.4-0.2-0.1
Short access day 10 total infusions0.20.30.40.6-0.70.60.2
Short access total infusions0.70.92.41.5-0.9-0.30.2
Short access day 1 locomotion0.20.20.50.7-0.50.10.2
Short access day 10 total locomotion1.83.37.8-1.41.42.8-1.1
Short access total locomotion0.40.51.70.2-0.31.3-0.5
One hour access (0.3 mA shock)0.81.01.71.3-1.3-0.40.5
Compulsive drug intake0.10.20.40.20.6-0.4-0.2
One hour access (shock baseline)0.20.30.70.5-0.90.10.5
Social response proportion6.77.610.8-2.72.63.3-2.3
Social responses1.51.93.2-1.31.51.8-0.6
Social time0.50.71.5-0.71.20.8-0.4
Soleus weight0.71.93.80.8-1.6-0.9-1.9
Bone: stiffness0.10.20.5-0.40.3-0.20.7
Tibialis anterior weight2.06.89.7-2.42.53.1-2.3
Time to tail flick, vehicle, before self-admin0.10.10.2-0.4-0.3-0.1-0.4
Time to tail flick, vehicle, after self-admin0.20.31.0-0.2-1.0-0.10.1
Time to tail flick, test, before self-admin0.50.51.3-0.40.51.20.5
Time to tail flick, test, after self-admin0.90.91.6-1.01.31.00.1
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.0-0.30.20.3
Delta time to tail flick, test, before/after SA0.40.41.0-0.60.5-0.1-1.0
Tibia length0.10.20.2-0.3-0.5-0.3-0.4
Ambulatory time before self-admin0.30.40.90.8-0.9-0.20.2
Ambulatory time after self-admin0.91.11.61.1-0.5-1.31.1
Bone: tissue strength0.40.40.9-0.90.40.5-0.5
Total heroin consumption0.70.91.6-1.30.50.8-0.9
Bone: trabecular number0.00.00.1-0.00.1-0.30.1
Bone: trabecular spacing0.91.21.5-1.21.21.20.3
Bone: trabecular thickness2.12.63.8-1.71.31.4-2.0
Bone: trabecular tissue density0.20.30.50.40.70.40.7
Water consumed over 24 hours3.64.811.62.3-0.9-1.33.4
Number of responses in last shaping day1.11.22.51.6-1.2-0.50.8