LOC134485230

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134485230 0.03 0.02 6.8e-03 0.01 0.01 0.01 0.01 8.2e-03 3.4e-02 1.2e-02 2.0e-02
2 NAcc gene expression LOC134485230 0.07 0.04 4.2e-07 0.04 0.05 0.06 0.05 7.7e-07 4.2e-08 9.8e-09 2.8e-08
3 PL gene expression LOC134485230 0.12 0.06 1.8e-07 0.06 0.08 0.07 0.06 1.8e-07 8.0e-09 9.5e-08 4.5e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.94.911.7-3.4-1.5-0.9
Area under the delay curve3.23.86.2-1.0-2.5-2.0
BMI with tail0.00.20.2-0.40.30.5
BMI without tail0.61.82.3-1.1-1.5-1.4
Body weight3.716.219.5-3.6-4.4-4.0
Weight adjusted by age0.00.10.1-0.3-0.3-0.1
Bone surface2.03.68.2-2.9-1.4-0.8
Bone volume3.15.611.5-3.4-1.9-1.3
Breakpoint value in progressive ratio session1.72.12.8-1.1-1.5-1.7
Number of licking bursts1.22.03.70.9-1.2-1.9
Context. condit. distance diff. score0.80.92.2-1.50.30.7
Locomotion velocity, session 11.82.03.01.71.40.9
Locomotion distance, session 10.10.20.20.40.50.3
Locomotion velocity, session 20.80.91.21.01.10.7
Locomotion distance, session 20.20.20.5-0.1-0.3-0.7
Locomotion velocity, session 30.30.30.6-0.8-0.4-0.5
Locomotion distance, session 30.70.81.4-1.2-0.6-0.7
Stereotopy head waving bouts, day 30.60.71.40.10.91.2
Stereotopy head waving duration, day 30.30.30.70.30.40.8
Locomotion velocity, session 70.50.50.9-0.9-0.6-0.5
Locomotion distance, session 70.30.40.6-0.6-0.8-0.6
Stereotopy head waving bouts, day 70.10.10.30.00.50.4
Stereotopy head waving duration, day 70.10.10.1-0.10.30.3
Locomotion velocity, session 80.30.40.40.60.60.6
Locomotion distance, session 80.40.50.6-0.60.80.8
Degree of sensitization distance0.20.20.50.7-0.4-0.1
Degree of sensitization stereotypy0.00.10.1-0.3-0.1-0.2
Conditioned locomotion0.10.10.3-0.5-0.1-0.1
Cocaine response after cond. corrected0.60.71.3-1.2-0.8-0.4
Cocaine response after cond. not corrected1.92.33.1-1.4-1.8-1.3
Cocaine response before conditioning1.41.73.10.3-1.8-1.3
Saline control response0.71.02.0-0.9-1.4-0.5
Bone: connectivity density0.81.33.4-1.8-0.60.2
Bone: cortical apparent density0.50.71.00.80.71.0
Bone: cortical area5.38.111.5-3.4-2.6-2.4
Bone: cortical porosity0.60.71.01.00.70.7
Bone: cortical porosity0.10.10.30.60.00.1
Bone: cortical thickness4.67.68.4-2.6-2.8-2.9
Bone: cortical thickness1.01.21.5-1.0-1.1-1.2
Bone: cortical tissue density0.70.91.20.90.91.1
Condit. Reinf. active minus inactive responses0.30.40.70.1-0.7-0.8
Condit. Reinf. active-inactive response ratio0.80.81.41.20.80.5
Condit. Reinf. active responses1.41.72.2-1.2-1.5-1.3
Condit. Reinf. inactive responses3.23.95.5-2.3-2.0-1.5
Incentive salience index mean1.11.42.3-0.2-1.3-1.5
Condit. Reinf. lever presses0.50.71.10.1-1.0-1.1
Condit. Reinf. active minus inactive responses1.41.72.5-1.6-1.2-1.2
Condit. Reinf. active-inactive response ratio0.30.40.7-0.9-0.4-0.5
Condit. Reinf. active responses2.94.15.7-2.4-2.0-1.6
Condit. Reinf. inactive responses2.22.93.5-1.7-1.9-1.5
Condit. Reinf. lever presses0.40.50.6-0.7-0.7-0.8
Condit. Reinf. lever reinforcers received2.12.93.9-2.0-1.7-1.4
Conditioned reinforcement - actives0.40.61.2-0.6-1.1-0.4
Conditioned reinforcement - inactives0.20.30.6-0.4-0.50.8
Conditioned locomotion0.20.30.9-0.00.20.9
Patch foraging indifference point 0 sec1.93.55.3-0.4-2.3-2.2
Patch foraging indifference point AUC1.52.14.20.2-2.0-1.4
Delay disc. indifference point, 0s delay2.83.14.9-1.3-2.2-1.7
Delay disc. indifference point, 16s delay2.22.54.0-1.0-2.0-1.5
Delay disc. indifference point, 2s delay0.40.51.0-0.4-1.0-0.5
Delay disc. indifference point, 24s delay2.42.64.8-0.6-2.2-1.7
Delay disc. indifference point, 4s delay3.94.15.9-1.4-2.4-2.1
Delay disc. indifference point, 8s delay1.82.13.4-0.1-1.8-1.7
Indifference point function ln k0.61.11.6-1.31.10.6
Indifference point function log k0.61.11.6-1.31.10.6
Patch foraging total patch changes 0 sec1.93.55.4-0.5-2.3-2.2
Patch foraging total patch changes 12 sec1.31.72.50.9-1.6-1.3
Patch foraging total patch changes 18 sec1.62.44.30.1-2.1-1.7
Patch foraging total patch changes 24 sec3.05.28.5-0.4-2.9-2.6
Patch foraging total patch changes 6 sec2.74.17.00.7-2.6-2.2
Patch foraging time to switch 0 sec0.81.62.71.61.40.5
Patch foraging water rate 0 sec0.20.51.5-1.2-0.20.2
Patch foraging water rate 12 sec0.51.01.2-0.9-1.0-1.1
Patch foraging water rate 18 sec0.40.61.3-1.1-0.4-0.5
Patch foraging water rate 24 sec2.83.96.6-2.6-1.7-1.5
Patch foraging water rate 6 sec0.20.30.3-0.30.60.6
Seeking ratio, delayed vs. immediate footshock0.50.60.60.80.70.8
Distance traveled before self-admin0.20.20.40.40.40.6
Distance traveled after self-admin0.91.12.40.21.01.5
Extensor digitorum longus weight0.20.81.4-0.8-1.2-0.7
Bone: elastic displacement7.48.610.12.83.22.8
Bone: elastic work7.09.111.92.33.43.2
Bone: endosteal estimation1.32.87.7-2.8-0.8-0.2
Bone: endosteal perimeter1.22.57.4-2.70.10.1
Epididymis fat weight0.62.05.0-2.2-0.8-0.5
Delta time in closed arm before/after self-admin0.40.30.70.80.1-0.6
Delta time in open arm before/after self-admin0.40.40.6-0.80.30.7
Diff in mean of infusions in LGA sessions0.10.20.4-0.10.60.3
Delay discount exponential model param3.64.06.61.02.62.1
Extinction: sum of active levers before priming0.50.50.9-0.5-0.6-0.9
Active lever presses in extinction session 60.80.81.6-1.3-0.6-0.6
Bone: final force2.53.95.3-2.3-1.8-1.8
Bone: final moment1.82.94.3-2.1-1.5-1.5
Food consumed during 24 hour testing period0.81.12.2-0.1-1.0-1.5
Glucose0.20.40.70.40.80.5
Heart weight0.10.20.40.6-0.40.1
Delay discount hyperbolic model param2.93.25.30.92.31.9
Intermittent access intake day 1-15 change0.10.10.2-0.5-0.3-0.2
Intermittent access intake escalation0.00.10.3-0.5-0.10.1
Intermittent access intake escalation 20.40.50.80.30.90.8
Intermitt. access day 1 inactive lever presses0.10.20.50.10.20.7
Intermitt. access day 15 inactive lever presses0.40.81.4-1.2-0.30.9
Intermitt. access escalation Index0.30.41.01.0-0.30.1
Intermittent access day 1 total infusions0.30.50.9-1.0-0.70.1
Intermittent access day 15 total infusions0.60.91.7-1.3-1.0-0.0
Intermittent access terminal intake (last 3 days)0.20.30.7-0.5-0.10.8
Intermittent access total infusions0.30.40.7-0.8-0.40.6
Intermittent access day 1 locomotion0.40.51.3-1.1-0.60.0
Intermittent access day 15 total locomotion0.30.60.8-0.80.50.9
Intermittent access total locomotion0.50.61.0-0.80.41.0
Intermittent access standard deviation0.20.51.1-1.0-0.5-0.3
Left kidney weight1.78.08.7-2.6-2.9-2.9
Right kidney weight2.19.412.8-2.0-3.4-3.6
Cocaine induced anxiety0.30.40.6-0.8-0.5-0.6
Post-drug Anxiety0.20.20.5-0.70.30.0
Baseline Anxiety0.60.71.2-0.11.10.9
Tail length4.316.922.5-3.3-4.7-4.2
Length with tail7.130.940.1-4.6-6.3-5.6
Length without tail4.313.715.6-3.7-3.9-3.4
Times rat made contact with spout1.21.42.3-0.7-1.5-1.1
Lifetime Intake0.20.30.4-0.6-0.50.4
Liver weight, left1.52.53.1-1.8-1.5-1.5
Liver weight, right1.52.64.4-2.1-1.5-1.1
Locomotor activity0.10.10.20.4-0.2-0.4
Locomotor testing distance0.20.40.90.9-0.3-0.4
Locomotor testing rearing0.10.20.3-0.3-0.6-0.5
Locomotion in novel chamber1.92.54.0-0.82.01.6
Locomotion in novel chamber post-restriction1.62.75.9-2.4-1.0-1.0
Fecal boli incidents, locomotor time 10.71.01.31.10.71.1
Change in fecal boli incidents, locomotor task0.60.61.1-0.4-0.8-1.0
Time >=10cm from walls, locomotor time 12.93.15.1-2.3-1.4-1.5
Bouts of movement, locomotor time 10.81.01.7-0.7-0.8-1.3
Total resting periods, locomotor time 11.41.62.6-0.8-1.2-1.6
Rest time, locomotor task time 10.20.20.70.80.20.1
Distance moved, locomotor task time 11.01.42.1-0.9-1.4-1.2
Vertical activity count, locomotor time 10.10.20.3-0.5-0.3-0.4
Time >=10cm from walls, locomotor time 21.72.54.2-0.9-2.1-1.6
Bouts of movement, locomotor time 20.10.20.40.6-0.1-0.3
Total resting periods, locomotor time 20.20.30.40.6-0.3-0.6
Rest time, locomotor task time 20.70.91.90.1-0.9-1.4
Distance moved, locomotor task time 20.30.30.6-0.8-0.6-0.2
Vertical activity count, locomotor time 20.50.71.61.20.30.6
Light reinforcement 10.00.10.1-0.4-0.1-0.2
Light reinforcement 22.03.14.22.11.71.4
Bone: marrow area1.32.98.1-2.8-0.7-0.1
Bone: maximum diameter3.26.116.8-4.1-1.0-0.6
Bone: maximum force1.93.36.0-2.4-1.5-1.4
Bone: maximum moment1.42.54.7-2.2-1.3-1.2
Mean time between licks in bursts1.02.43.51.91.61.1
Mean num. licks in bursts0.71.02.0-1.00.51.4
Cd content in liver1.41.53.21.81.00.6
Co content in liver2.73.13.71.71.71.9
Cu content in liver0.30.41.21.1-0.0-0.0
Fe content in liver0.20.30.60.8-0.3-0.4
K content in liver0.30.30.80.90.30.3
Mg content in liver0.20.20.40.60.30.3
Mn content in liver0.50.61.81.3-0.0-0.1
Na content in liver0.10.10.30.6-0.1-0.3
Rb content in liver0.70.81.1-1.0-0.7-0.9
Se content in liver6.78.022.74.81.10.1
Sr content in liver3.12.73.71.11.81.9
Zn content in liver2.12.35.42.31.00.7
Bone: minimum diameter2.85.111.2-3.3-1.5-1.3
Time in familiar zone, hab. session 10.00.00.00.10.00.2
Time in novel zone, hab. session 10.40.40.91.00.4-0.0
Total zone transitions, hab. session 10.10.10.2-0.5-0.1-0.3
Total locomotion distance, hab. session 10.10.10.30.60.3-0.1
Locomotion velocity, hab. session 10.10.20.40.70.30.1
Time in familiar zone, hab. session 20.40.40.91.00.30.5
Time in novel zone, hab. session 20.00.00.1-0.10.30.2
Total zone transitions, hab. session 20.30.40.8-0.2-0.6-0.9
Total locomotion distance, hab. session 20.10.10.20.40.3-0.2
Locomotion velocity, hab. session 20.10.10.20.40.1-0.4
Novel to familiar place preference ratio0.50.51.1-1.1-0.5-0.5
Novelty place preference0.20.30.6-0.8-0.3-0.2
Time in novel zone, NPP test0.10.10.1-0.3-0.2-0.2
Total zone transitions, NPP test0.40.51.10.2-0.7-1.0
Total locomotion distance, NPP test0.10.10.20.50.0-0.2
Locomotion velocity, NPP test0.10.10.3-0.0-0.4-0.5
Intraocular pressure0.40.60.7-0.8-0.7-0.8
Delta distance traveled before/after self-admin0.60.61.1-1.00.50.7
Delta ambulatory time before/after self-admin0.40.50.9-0.90.10.9
Parametrial fat weight1.74.06.4-0.1-2.3-2.5
Pavlov. Cond. lever latency0.60.71.00.70.91.0
Pavlov. Cond. magazine entry latency0.20.20.50.2-0.3-0.7
Pavlov. Cond. change in total contacts0.40.40.80.2-0.6-0.9
Pavlov. Cond. index score1.01.32.3-0.5-1.1-1.5
Pavlov. Cond. latency score1.41.82.7-0.9-1.4-1.7
Pavlov. Cond. lever contacts0.81.01.4-0.6-1.1-1.2
Pavlov. Cond. magazine entry number0.10.20.3-0.4-0.10.5
Pavlov. Cond. intertrial magazine entries1.51.82.5-1.3-1.6-1.2
Pavlov. Cond. lever-magazine prob. diff.0.80.91.9-0.2-0.9-1.4
Pavlov. Cond. response bias0.20.20.30.60.0-0.6
Pavlov. Cond. lever latency0.20.20.30.40.60.5
Pavlov. Cond. magazine entry latency0.30.30.60.8-0.2-0.5
Pavlov. Cond. change in total contacts0.40.60.9-0.5-1.0-0.8
Pavlov. Cond. index score0.60.81.2-0.5-1.0-1.1
Pavlov. Cond. latency score0.60.81.1-0.7-1.0-1.0
Pavlov. Cond. lever contacts0.10.10.1-0.2-0.4-0.3
Pavlov. Cond. magazine entry number0.30.40.7-0.60.50.8
Pavlov. Cond. intertrial magazine entries1.92.93.3-1.8-1.7-1.6
Pavlov. Cond. lever-magazine prob. diff.0.70.91.3-0.5-1.0-1.1
Pavlov. Cond. response bias0.20.30.50.2-0.6-0.7
Time in closed arm before self-admin0.10.10.20.40.20.4
Time in closed arm after self-admin0.40.51.31.1-0.2-0.3
Time in open arm before self-admin0.30.30.40.60.60.4
Time in open arm after self-admin0.30.30.8-0.90.20.2
Bone: periosteal estimation2.96.113.8-3.7-1.7-1.3
Bone: periosteal perimeter2.64.510.4-3.2-1.3-1.1
Bone: post-yield work5.58.09.6-2.6-3.1-2.8
Progressive ratio test 1 active lever presses0.30.40.6-0.80.00.8
Progressive ratio test 1 breakpoint0.30.40.6-0.80.10.7
Progressive ratio test 1 inactive lever presses0.20.20.6-0.1-0.80.3
Progressive ratio test 2 active lever presses0.70.82.1-1.5-0.50.2
Progressive ratio test 2 breakpoint0.70.82.0-1.4-0.50.3
Progressive ratio test 2 inactive lever presses0.30.41.0-0.50.11.0
Incentive Sensitization - Responses0.50.81.5-1.2-0.8-0.5
Incentive Sensitization - Breakpoint0.60.81.6-1.3-0.8-0.5
Sum of active levers in priming session hrs 5-60.60.61.71.30.20.2
Progressive ratio0.20.30.5-0.6-0.2-0.7
Food seeking constrained by brief footshock1.11.42.9-1.7-0.5-1.0
Seeking ratio, punishment vs. effort0.20.30.4-0.3-0.5-0.6
Retroperitoneal fat weight0.21.01.5-1.2-0.8-0.9
Reaction time number correct0.30.51.4-1.2-0.3-0.1
Reaction time mean minus median0.30.71.3-0.21.10.9
Reaction time mean minus median AUC0.20.61.1-0.11.00.8
Reaction time num false alarms1.62.32.6-1.5-1.6-1.4
Reaction time num false alarms AUC1.62.63.0-1.4-1.7-1.7
Reaction time trials correct on left0.30.51.4-1.2-0.3-0.1
Reaction time trials on left0.30.61.6-1.2-0.4-0.1
Reaction time mean1.72.63.21.81.71.3
Reaction time mean AUC2.53.94.62.22.11.7
Median of all reaction times2.84.05.52.32.01.6
Reaction time omissions0.20.30.8-0.90.40.1
Reaction time false alarm rate1.11.52.0-0.8-1.3-1.4
Reaction time premature initiation rate1.21.62.1-1.0-1.4-1.3
Reaction time premature initiations1.73.03.6-1.9-1.8-1.5
Std. dev. reaction times0.30.50.90.21.00.6
Reaction time trials completed0.30.61.6-1.2-0.4-0.1
Reaction time trials AUC0.20.41.0-1.0-0.3-0.1
Run reversals in cocaine runway, females0.60.60.90.50.90.7
Run reversals in cocaine runway, males0.70.71.60.2-0.7-1.3
Latency to leave start box in cocaine runway1.31.53.7-1.90.40.7
Latency to leave start box in cocaine runway, F0.60.71.8-1.30.20.6
Latency to leave start box in cocaine runway, M0.90.82.4-1.50.10.0
Std. dev. time between licks in bursts1.92.64.82.21.50.8
Total sessions with >9 infusions0.50.61.50.2-1.2-0.6
Short access day 1 total inactive lever presses0.30.41.2-0.1-0.01.1
Short access day 10 total inactive lever presses0.51.33.1-0.2-1.8-0.9
Short access day 1 total infusions0.30.51.30.4-1.1-0.1
Short access day 10 total infusions0.70.91.91.40.20.9
Short access total infusions0.20.20.40.3-0.70.4
Short access day 1 locomotion0.10.20.20.4-0.30.4
Short access day 10 total locomotion0.30.50.70.40.90.7
Short access total locomotion0.50.60.80.90.50.7
One hour access (0.3 mA shock)1.41.64.4-2.1-0.7-0.1
Compulsive drug intake0.80.91.6-1.3-0.9-0.6
One hour access (shock baseline)0.20.20.6-0.8-0.3-0.2
Social response proportion2.73.14.80.82.22.0
Social responses0.50.61.00.50.71.0
Social time0.30.40.91.0-0.2-0.3
Soleus weight0.30.91.6-0.60.81.3
Bone: stiffness3.45.56.6-2.6-2.3-2.1
Tibialis anterior weight0.30.91.3-1.1-1.1-0.3
Time to tail flick, vehicle, before self-admin2.42.52.91.51.71.5
Time to tail flick, vehicle, after self-admin2.43.14.3-1.1-2.1-2.0
Time to tail flick, test, before self-admin0.30.30.6-0.30.50.8
Time to tail flick, test, after self-admin0.20.20.60.8-0.20.3
Delta time to tail flick, vehicle, before/after SA9.99.510.8-3.0-3.3-2.9
Delta time to tail flick, test, before/after SA0.10.10.30.1-0.5-0.4
Tibia length1.23.43.6-1.7-1.9-1.9
Ambulatory time before self-admin0.50.70.80.80.90.8
Ambulatory time after self-admin1.31.53.3-0.11.11.8
Bone: tissue strength0.70.71.81.40.50.3
Total heroin consumption1.61.83.0-1.0-1.7-1.3
Bone: trabecular number1.72.85.9-2.4-1.4-0.8
Bone: trabecular spacing0.40.50.80.5-0.5-0.9
Bone: trabecular thickness1.31.73.1-1.8-1.1-0.8
Bone: trabecular tissue density0.71.02.8-1.70.00.4
Water consumed over 24 hours1.21.72.8-0.1-1.7-1.5
Number of responses in last shaping day0.10.20.30.3-0.30.5