LOC134485229

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134485229 0.03 0.02 4.2e-03 0.01 0.01 0 0 7.0e-03 4.1e-02 2.1e-01 8.0e-02
2 NAcc intron excision ratio chr1_243350038_243365516 0.07 0.04 5.0e-07 0.03 0.05 0.05 0.04 1.2e-05 5.6e-08 7.0e-08 5.2e-07
3 NAcc intron excision ratio chr1_243351821_243365516 0.04 0.02 9.9e-07 0.04 0.04 0.05 0.04 1.9e-07 1.5e-06 1.4e-07 4.4e-07
4 Adipose alternative TSS XM_063281031.1 0.05 0.05 9.7e-03 0.01 0.02 0 0.01 1.4e-02 3.5e-03 1.2e-01 3.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.27.212.0-3.5-2.6-3.10.5
Area under the delay curve2.02.44.5-2.1-1.80.21.4
BMI with tail0.20.52.00.0-0.1-1.4-0.4
BMI without tail0.61.72.0-1.3-1.31.41.2
Body weight2.410.717.3-4.2-3.4-0.63.6
Weight adjusted by age0.10.10.4-0.6-0.10.1-0.1
Bone surface2.95.29.2-3.0-2.3-2.50.3
Bone volume3.86.812.0-3.5-2.7-2.61.0
Breakpoint value in progressive ratio session0.91.12.9-1.0-0.6-0.11.7
Number of licking bursts2.33.75.01.12.02.22.2
Context. condit. distance diff. score1.01.23.5-0.8-1.9-0.7-0.4
Locomotion velocity, session 12.83.06.02.12.5-1.0-0.9
Locomotion distance, session 10.40.50.90.90.9-0.5-0.3
Locomotion velocity, session 21.01.12.21.51.2-0.7-0.6
Locomotion distance, session 20.60.81.10.80.80.81.0
Locomotion velocity, session 30.20.20.4-0.2-0.40.60.6
Locomotion distance, session 30.60.71.0-0.5-0.90.91.0
Stereotopy head waving bouts, day 31.01.12.3-0.0-0.2-1.5-1.5
Stereotopy head waving duration, day 30.70.81.6-0.5-0.4-1.1-1.3
Locomotion velocity, session 71.31.42.3-1.2-1.5-1.20.6
Locomotion distance, session 70.91.12.1-1.4-1.4-0.20.6
Stereotopy head waving bouts, day 70.30.40.90.40.3-1.0-0.5
Stereotopy head waving duration, day 70.30.31.00.10.2-1.0-0.6
Locomotion velocity, session 80.10.10.30.20.1-0.5-0.4
Locomotion distance, session 80.20.30.50.4-0.7-0.7-0.3
Degree of sensitization distance0.20.20.5-0.7-0.6-0.0-0.1
Degree of sensitization stereotypy0.00.00.2-0.1-0.0-0.40.0
Conditioned locomotion0.10.20.3-0.3-0.2-0.60.4
Cocaine response after cond. corrected0.40.51.1-1.1-0.9-0.40.0
Cocaine response after cond. not corrected1.51.73.2-1.8-1.60.50.8
Cocaine response before conditioning2.12.55.4-1.2-1.32.31.1
Saline control response2.83.87.2-2.5-2.71.3-0.1
Bone: connectivity density2.03.25.6-2.1-1.5-2.4-0.6
Bone: cortical apparent density0.40.51.70.60.30.2-1.3
Bone: cortical area4.16.39.5-3.1-2.9-1.42.3
Bone: cortical porosity0.20.20.30.60.50.0-0.5
Bone: cortical porosity0.00.00.10.10.10.30.1
Bone: cortical thickness2.54.17.1-2.2-2.0-0.72.7
Bone: cortical thickness0.60.71.3-0.6-0.50.81.1
Bone: cortical tissue density0.50.71.90.70.50.2-1.4
Condit. Reinf. active minus inactive responses0.70.82.40.30.21.60.9
Condit. Reinf. active-inactive response ratio1.11.21.91.41.40.8-0.5
Condit. Reinf. active responses1.62.03.2-1.2-1.41.81.2
Condit. Reinf. inactive responses3.03.76.7-2.4-2.60.71.2
Incentive salience index mean1.31.64.0-0.2-0.42.01.5
Condit. Reinf. lever presses0.91.23.5-0.1-0.51.91.0
Condit. Reinf. active minus inactive responses0.91.21.8-1.0-1.3-0.61.3
Condit. Reinf. active-inactive response ratio0.40.51.1-0.2-0.5-1.10.6
Condit. Reinf. active responses2.33.25.5-2.2-2.3-0.51.5
Condit. Reinf. inactive responses1.92.44.7-2.2-1.90.41.2
Condit. Reinf. lever presses0.20.30.4-0.7-0.4-0.20.7
Condit. Reinf. lever reinforcers received1.62.33.8-1.9-2.0-0.31.3
Conditioned reinforcement - actives1.22.14.8-2.2-1.8-0.2-0.1
Conditioned reinforcement - inactives2.33.45.3-2.3-2.2-1.4-1.3
Conditioned locomotion0.81.01.6-1.1-0.9-0.6-1.3
Patch foraging indifference point 0 sec0.61.13.6-0.7-0.20.11.9
Patch foraging indifference point AUC2.13.04.5-2.0-1.72.10.7
Delay disc. indifference point, 0s delay2.52.84.8-2.2-1.90.61.5
Delay disc. indifference point, 16s delay1.92.14.1-2.0-1.8-0.60.8
Delay disc. indifference point, 2s delay0.60.71.5-1.2-1.0-0.50.0
Delay disc. indifference point, 24s delay1.92.13.2-1.8-1.81.01.1
Delay disc. indifference point, 4s delay2.82.94.8-2.2-1.90.91.6
Delay disc. indifference point, 8s delay0.81.01.4-1.2-0.71.01.0
Indifference point function ln k1.11.96.11.00.8-2.50.1
Indifference point function log k1.11.96.11.00.8-2.50.1
Patch foraging total patch changes 0 sec0.61.13.5-0.8-0.30.41.9
Patch foraging total patch changes 12 sec0.81.02.5-1.0-0.31.60.6
Patch foraging total patch changes 18 sec1.62.55.7-1.4-0.92.41.1
Patch foraging total patch changes 24 sec1.62.85.1-1.4-1.01.72.3
Patch foraging total patch changes 6 sec1.72.66.0-1.4-0.72.41.4
Patch foraging time to switch 0 sec1.53.16.52.32.60.7-0.0
Patch foraging water rate 0 sec0.51.01.6-0.9-1.3-1.2-0.3
Patch foraging water rate 12 sec0.30.61.4-0.7-0.4-0.51.2
Patch foraging water rate 18 sec0.71.23.5-0.6-0.7-1.90.6
Patch foraging water rate 24 sec2.02.84.9-2.1-2.20.11.4
Patch foraging water rate 6 sec0.10.10.30.10.1-0.3-0.5
Seeking ratio, delayed vs. immediate footshock0.91.13.20.80.41.8-0.4
Distance traveled before self-admin1.01.34.40.6-0.12.1-0.5
Distance traveled after self-admin1.21.44.0-0.8-0.6-0.8-2.0
Extensor digitorum longus weight0.62.55.2-1.7-2.31.11.0
Bone: elastic displacement5.76.510.83.32.7-0.9-2.6
Bone: elastic work4.76.29.22.72.1-2.0-3.0
Bone: endosteal estimation2.04.47.9-2.8-2.5-1.90.1
Bone: endosteal perimeter1.83.89.8-1.7-1.5-3.10.0
Epididymis fat weight0.72.44.5-2.1-1.8-1.40.4
Delta time in closed arm before/after self-admin1.91.82.71.61.61.10.9
Delta time in open arm before/after self-admin1.31.31.7-1.3-1.3-0.9-1.1
Diff in mean of infusions in LGA sessions0.30.41.11.10.40.40.1
Delay discount exponential model param2.22.54.42.11.8-0.5-1.4
Extinction: sum of active levers before priming0.30.41.3-0.0-0.30.31.1
Active lever presses in extinction session 61.21.22.4-1.6-1.3-0.60.7
Bone: final force1.72.83.8-2.0-1.5-1.41.8
Bone: final moment1.42.23.0-1.7-1.2-1.61.4
Food consumed during 24 hour testing period0.50.82.5-0.00.70.31.6
Glucose0.30.51.21.10.60.5-0.2
Heart weight0.20.31.0-0.30.2-1.0-0.4
Delay discount hyperbolic model param1.71.93.51.91.6-0.3-1.2
Intermittent access intake day 1-15 change0.81.66.0-0.3-0.3-2.50.1
Intermittent access intake escalation0.61.34.8-0.2-0.5-2.2-0.1
Intermittent access intake escalation 20.60.71.21.00.5-1.1-0.4
Intermitt. access day 1 inactive lever presses0.31.01.7-0.6-0.8-1.3-1.1
Intermitt. access day 15 inactive lever presses2.34.77.1-2.2-2.1-2.7-1.6
Intermitt. access escalation Index0.00.00.10.1-0.30.0-0.2
Intermittent access day 1 total infusions1.72.74.1-1.8-1.8-2.0-0.4
Intermittent access day 15 total infusions2.53.76.2-2.0-2.1-2.5-0.2
Intermittent access terminal intake (last 3 days)1.62.03.7-1.2-1.4-1.9-1.0
Intermittent access total infusions2.02.34.2-1.4-1.6-2.1-0.7
Intermittent access day 1 locomotion1.62.13.8-1.3-1.6-1.9-0.2
Intermittent access day 15 total locomotion1.32.48.0-0.5-0.7-2.8-1.0
Intermittent access total locomotion2.02.46.9-0.8-1.1-2.6-1.0
Intermittent access standard deviation0.71.53.8-1.1-1.0-2.00.1
Left kidney weight0.94.37.9-2.3-1.9-0.72.8
Right kidney weight1.04.611.8-2.1-1.40.43.4
Cocaine induced anxiety0.50.71.2-1.1-0.9-0.90.4
Post-drug Anxiety0.50.51.5-0.5-0.4-1.2-0.4
Baseline Anxiety1.11.33.30.80.7-1.8-0.9
Tail length3.814.920.2-4.5-3.83.43.7
Length with tail4.921.237.3-6.1-4.81.04.9
Length without tail3.611.520.1-4.5-3.4-2.23.1
Times rat made contact with spout1.21.42.7-1.6-1.30.61.0
Lifetime Intake2.22.75.6-1.5-1.6-2.4-0.7
Liver weight, left0.81.32.4-1.2-1.0-0.81.5
Liver weight, right2.03.55.3-2.3-2.0-2.00.8
Locomotor activity0.50.82.20.81.50.00.6
Locomotor testing distance0.61.02.91.01.70.40.5
Locomotor testing rearing0.10.10.5-0.00.1-0.10.7
Locomotion in novel chamber1.21.53.01.30.7-1.7-1.0
Locomotion in novel chamber post-restriction1.22.04.2-1.5-2.00.71.1
Fecal boli incidents, locomotor time 10.50.71.4-0.1-0.71.2-1.0
Change in fecal boli incidents, locomotor task0.30.20.9-0.00.2-0.11.0
Time >=10cm from walls, locomotor time 12.72.95.5-2.0-2.30.41.5
Bouts of movement, locomotor time 10.60.72.5-0.20.50.11.6
Total resting periods, locomotor time 10.80.93.0-0.9-0.00.01.7
Rest time, locomotor task time 10.30.41.20.20.6-1.1-0.2
Distance moved, locomotor task time 10.81.11.5-1.0-1.20.91.2
Vertical activity count, locomotor time 10.10.30.80.20.00.90.5
Time >=10cm from walls, locomotor time 21.82.74.5-2.1-2.10.81.2
Bouts of movement, locomotor time 20.10.20.50.60.7-0.00.3
Total resting periods, locomotor time 20.20.40.60.70.80.20.6
Rest time, locomotor task time 21.01.23.10.51.10.61.8
Distance moved, locomotor task time 21.01.23.0-1.2-1.70.5-0.0
Vertical activity count, locomotor time 20.30.40.9-0.2-0.50.5-0.9
Light reinforcement 10.61.45.5-0.30.3-2.30.2
Light reinforcement 21.82.84.01.62.0-1.6-1.5
Bone: marrow area2.24.78.3-2.9-2.5-2.00.0
Bone: maximum diameter4.07.410.6-3.2-3.2-3.00.5
Bone: maximum force1.93.45.6-2.4-1.9-1.81.2
Bone: maximum moment1.62.84.6-2.1-1.5-1.81.0
Mean time between licks in bursts1.02.34.62.12.0-0.1-1.0
Mean num. licks in bursts2.43.76.4-1.8-2.5-1.6-1.7
Cd content in liver1.61.83.31.81.8-0.6-0.6
Co content in liver1.51.75.01.00.8-0.4-2.2
Cu content in liver0.40.51.60.31.3-0.1-0.6
Fe content in liver0.91.11.61.01.21.30.5
K content in liver0.50.51.70.50.31.3-0.1
Mg content in liver0.20.20.30.40.40.6-0.3
Mn content in liver0.90.91.90.81.11.40.0
Na content in liver0.20.20.40.60.40.60.4
Rb content in liver0.20.30.9-0.3-0.1-0.21.0
Se content in liver9.611.422.44.34.72.2-0.2
Sr content in liver2.21.94.51.01.0-1.1-2.1
Zn content in liver3.53.85.72.42.02.3-0.6
Bone: minimum diameter2.85.18.3-2.9-2.8-1.71.3
Time in familiar zone, hab. session 10.20.20.5-0.30.1-0.7-0.3
Time in novel zone, hab. session 10.90.91.51.11.01.20.2
Total zone transitions, hab. session 10.10.10.3-0.20.2-0.60.3
Total locomotion distance, hab. session 10.50.71.51.01.20.60.4
Locomotion velocity, hab. session 10.71.01.81.11.11.40.3
Time in familiar zone, hab. session 20.20.20.40.40.70.1-0.6
Time in novel zone, hab. session 20.00.00.10.1-0.10.3-0.2
Total zone transitions, hab. session 20.30.30.70.30.7-0.20.9
Total locomotion distance, hab. session 21.01.32.71.41.60.30.6
Locomotion velocity, hab. session 20.91.32.41.41.50.50.8
Novel to familiar place preference ratio0.91.01.9-1.2-0.8-1.40.3
Novelty place preference0.60.71.2-1.0-0.7-1.10.1
Time in novel zone, NPP test0.20.20.3-0.6-0.1-0.60.2
Total zone transitions, NPP test0.40.61.30.50.70.61.2
Total locomotion distance, NPP test0.70.91.41.10.91.20.4
Locomotion velocity, NPP test0.30.40.80.50.20.90.6
Intraocular pressure0.20.30.8-0.20.2-0.50.9
Delta distance traveled before/after self-admin3.94.111.2-1.6-1.2-3.3-1.2
Delta ambulatory time before/after self-admin4.05.08.8-2.4-1.9-3.0-1.4
Parametrial fat weight1.33.07.1-0.9-0.62.02.7
Pavlov. Cond. lever latency0.70.91.40.40.9-1.2-1.1
Pavlov. Cond. magazine entry latency0.60.81.00.90.51.01.0
Pavlov. Cond. change in total contacts0.40.50.90.60.40.70.9
Pavlov. Cond. index score1.01.33.20.1-0.41.41.8
Pavlov. Cond. latency score1.31.73.5-0.3-0.81.61.9
Pavlov. Cond. lever contacts0.70.81.6-0.2-0.61.21.3
Pavlov. Cond. magazine entry number0.70.91.5-1.2-0.9-0.7-0.9
Pavlov. Cond. intertrial magazine entries1.51.83.2-1.8-1.60.80.9
Pavlov. Cond. lever-magazine prob. diff.0.91.12.70.4-0.01.11.7
Pavlov. Cond. response bias0.80.91.61.31.00.70.8
Pavlov. Cond. lever latency0.20.30.90.90.60.0-0.1
Pavlov. Cond. magazine entry latency0.60.82.10.50.71.40.5
Pavlov. Cond. change in total contacts0.60.91.4-1.2-1.20.80.5
Pavlov. Cond. index score0.50.60.9-1.0-0.70.70.9
Pavlov. Cond. latency score0.50.61.1-1.0-0.80.40.8
Pavlov. Cond. lever contacts0.20.20.6-0.8-0.50.2-0.1
Pavlov. Cond. magazine entry number0.60.71.9-0.4-0.4-1.4-0.8
Pavlov. Cond. intertrial magazine entries1.21.82.8-1.5-1.4-0.61.7
Pavlov. Cond. lever-magazine prob. diff.0.40.60.9-0.8-0.60.70.9
Pavlov. Cond. response bias0.20.20.7-0.4-0.10.80.4
Time in closed arm before self-admin0.10.10.20.00.10.3-0.4
Time in closed arm after self-admin2.72.910.00.70.83.20.5
Time in open arm before self-admin0.50.61.21.01.10.3-0.2
Time in open arm after self-admin0.90.93.0-0.7-0.2-1.7-0.5
Bone: periosteal estimation3.47.112.4-3.5-3.1-2.31.1
Bone: periosteal perimeter2.95.07.0-2.6-2.5-2.41.1
Bone: post-yield work3.75.510.1-3.2-2.3-0.52.5
Progressive ratio test 1 active lever presses2.32.85.7-1.3-1.5-2.4-1.2
Progressive ratio test 1 breakpoint2.32.85.9-1.4-1.5-2.4-1.1
Progressive ratio test 1 inactive lever presses2.94.16.8-2.2-2.0-2.6-0.9
Progressive ratio test 2 active lever presses2.12.54.0-1.8-2.0-1.6-0.6
Progressive ratio test 2 breakpoint2.32.64.3-1.9-2.1-1.5-0.7
Progressive ratio test 2 inactive lever presses1.42.22.8-1.3-1.4-1.7-1.5
Incentive Sensitization - Responses1.52.13.0-1.7-1.7-1.60.2
Incentive Sensitization - Breakpoint1.72.33.5-1.9-1.8-1.50.2
Sum of active levers in priming session hrs 5-60.20.20.60.20.70.0-0.6
Progressive ratio0.20.41.30.30.1-0.41.1
Food seeking constrained by brief footshock0.50.72.60.1-0.0-0.21.6
Seeking ratio, punishment vs. effort0.10.20.5-0.20.10.70.5
Retroperitoneal fat weight0.20.81.2-1.1-0.8-0.70.9
Reaction time number correct0.51.01.8-1.3-1.30.6-0.0
Reaction time mean minus median0.81.94.01.31.0-2.0-0.9
Reaction time mean minus median AUC0.92.25.61.20.9-2.4-1.0
Reaction time num false alarms0.91.32.5-1.1-1.10.41.6
Reaction time num false alarms AUC0.81.33.7-0.7-0.60.71.9
Reaction time trials correct on left0.51.01.8-1.3-1.30.6-0.0
Reaction time trials on left0.50.91.8-1.3-1.30.60.0
Reaction time mean2.33.77.42.72.4-0.3-1.1
Reaction time mean AUC3.04.89.53.12.7-0.6-1.5
Median of all reaction times3.24.58.93.02.70.3-1.3
Reaction time omissions0.10.10.30.60.0-0.1-0.1
Reaction time false alarm rate0.50.72.7-0.2-0.10.01.6
Reaction time premature initiation rate0.71.01.8-1.2-0.8-0.51.3
Reaction time premature initiations1.22.24.1-2.0-1.6-0.11.5
Std. dev. reaction times1.01.82.71.61.4-1.4-0.7
Reaction time trials completed0.50.91.8-1.3-1.30.60.0
Reaction time trials AUC0.50.91.4-1.2-1.20.90.0
Run reversals in cocaine runway, females0.50.50.70.70.80.1-0.8
Run reversals in cocaine runway, males1.21.32.60.40.61.61.4
Latency to leave start box in cocaine runway0.40.51.5-0.3-1.20.4-0.5
Latency to leave start box in cocaine runway, F0.30.31.0-0.1-1.00.4-0.3
Latency to leave start box in cocaine runway, M0.10.10.3-0.3-0.5-0.10.1
Std. dev. time between licks in bursts2.12.95.72.32.40.1-0.6
Total sessions with >9 infusions0.80.91.4-1.2-1.2-1.00.0
Short access day 1 total inactive lever presses2.53.37.6-1.5-1.1-2.8-1.5
Short access day 10 total inactive lever presses1.84.47.3-2.5-1.92.70.3
Short access day 1 total infusions1.31.74.5-1.1-1.0-2.1-0.5
Short access day 10 total infusions1.01.33.5-0.2-0.3-1.9-1.2
Short access total infusions1.82.35.4-1.3-1.3-2.3-0.8
Short access day 1 locomotion0.50.61.4-0.2-0.6-1.2-0.7
Short access day 10 total locomotion0.61.12.71.00.6-1.7-0.5
Short access total locomotion0.81.02.60.70.4-1.6-0.9
One hour access (0.3 mA shock)2.73.14.7-2.1-2.2-1.8-0.2
Compulsive drug intake2.02.44.7-1.5-1.62.20.4
One hour access (shock baseline)1.42.17.9-0.5-0.3-2.80.2
Social response proportion3.64.09.71.41.2-3.1-1.8
Social responses1.92.58.7-0.10.1-2.9-1.1
Social time0.10.10.20.40.30.00.1
Soleus weight0.61.94.3-0.8-0.9-2.1-1.3
Bone: stiffness2.74.47.3-2.7-2.3-0.32.2
Tibialis anterior weight1.13.68.7-2.1-2.91.10.5
Time to tail flick, vehicle, before self-admin1.81.82.51.41.2-1.2-1.6
Time to tail flick, vehicle, after self-admin1.82.44.8-1.2-1.21.32.2
Time to tail flick, test, before self-admin0.60.61.1-0.5-0.81.1-0.6
Time to tail flick, test, after self-admin0.90.92.8-0.5-0.61.7-0.6
Delta time to tail flick, vehicle, before/after SA7.47.010.1-2.7-2.62.03.2
Delta time to tail flick, test, before/after SA0.00.00.0-0.1-0.1-0.00.2
Tibia length0.51.43.1-1.4-0.8-0.11.8
Ambulatory time before self-admin1.01.53.61.30.61.9-0.6
Ambulatory time after self-admin1.61.94.3-0.7-0.8-1.5-2.1
Bone: tissue strength0.40.40.90.50.9-0.4-0.4
Total heroin consumption1.61.83.9-2.0-1.0-1.01.1
Bone: trabecular number2.74.47.8-2.8-1.8-2.60.3
Bone: trabecular spacing0.30.40.80.30.10.90.9
Bone: trabecular thickness1.51.83.8-2.0-1.3-1.20.7
Bone: trabecular tissue density1.42.12.9-1.5-1.7-1.7-0.5
Water consumed over 24 hours1.31.72.7-1.1-0.71.61.6
Number of responses in last shaping day0.91.01.3-0.9-0.8-1.1-1.1