LOC134485174

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IC gene expression LOC134485174 0.09 0.06 8.4e-03 0.05 0.04 0.03 0.05 4.9e-03 6.7e-03 1.7e-02 3.7e-03
2 BLA gene expression LOC134485174 0.13 0.09 4.8e-05 0.08 0.06 0.03 0.07 7.1e-05 3.4e-04 8.4e-03 1.2e-04
3 PL gene expression LOC134485174 0.05 0.03 3.0e-05 0.03 0.04 0.04 0.03 1.2e-04 6.0e-05 9.2e-05 1.7e-04
4 NAcc gene expression LOC134485174 0.08 0.04 3.1e-07 0.05 0.04 0.04 0.05 1.1e-07 3.7e-07 2.0e-07 1.1e-07
5 Brain gene expression LOC134485174 0.08 0.05 2.2e-04 0.02 0.02 0.04 0.02 1.0e-02 6.2e-03 2.7e-04 2.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
Bone: apparent density1.22.02.81.61.71.51.2-1.1
Area under the delay curve0.20.20.8-0.3-0.4-0.4-0.90.1
BMI with tail3.913.516.94.03.73.94.12.4
BMI without tail5.817.623.24.84.44.84.51.3
Body weight2.410.614.43.83.63.63.50.5
Weight adjusted by age0.20.31.10.20.30.41.00.1
Bone surface1.11.92.61.61.61.51.40.5
Bone volume1.73.14.42.12.11.91.70.1
Breakpoint value in progressive ratio session1.41.62.4-1.5-1.5-1.3-0.9-1.0
Number of licking bursts3.76.07.9-2.5-2.7-2.7-2.81.3
Context. condit. distance diff. score0.20.30.5-0.7-0.6-0.6-0.2-0.2
Locomotion velocity, session 10.10.10.10.10.30.2-0.30.0
Locomotion distance, session 11.41.83.51.11.11.21.2-1.9
Locomotion velocity, session 20.10.20.6-0.20.0-0.1-0.8-0.4
Locomotion distance, session 21.92.73.61.81.91.91.4-1.0
Locomotion velocity, session 30.50.60.80.70.90.80.6-0.7
Locomotion distance, session 30.10.10.30.40.30.40.50.2
Stereotopy head waving bouts, day 30.60.70.9-0.9-1.0-0.9-0.8-0.7
Stereotopy head waving duration, day 30.20.20.4-0.4-0.6-0.5-0.4-0.5
Locomotion velocity, session 72.02.24.11.21.31.31.52.0
Locomotion distance, session 71.11.46.8-0.0-0.1-0.20.22.6
Stereotopy head waving bouts, day 70.10.20.30.30.30.50.2-0.5
Stereotopy head waving duration, day 71.72.03.11.51.41.81.6-0.4
Locomotion velocity, session 80.30.31.50.10.20.2-0.1-1.2
Locomotion distance, session 80.30.40.60.50.80.70.7-0.2
Degree of sensitization distance0.20.30.4-0.3-0.5-0.7-0.60.4
Degree of sensitization stereotypy1.51.62.71.41.41.71.20.0
Conditioned locomotion0.40.51.0-1.0-0.5-0.6-0.30.9
Cocaine response after cond. corrected0.10.20.3-0.5-0.3-0.4-0.60.1
Cocaine response after cond. not corrected0.10.20.50.30.30.30.30.7
Cocaine response before conditioning2.32.83.21.81.51.71.81.7
Saline control response0.10.20.3-0.5-0.5-0.4-0.3-0.2
Bone: connectivity density0.71.11.51.11.21.21.20.1
Bone: cortical apparent density1.21.62.0-1.2-1.4-1.3-1.4-1.1
Bone: cortical area3.04.77.22.72.52.41.90.4
Bone: cortical porosity0.70.81.50.80.91.01.2-0.1
Bone: cortical porosity0.40.40.80.30.50.50.8-0.9
Bone: cortical thickness1.01.63.21.81.61.40.50.5
Bone: cortical thickness0.60.71.50.90.80.6-0.61.2
Bone: cortical tissue density1.21.62.0-1.2-1.4-1.3-1.4-1.1
Condit. Reinf. active minus inactive responses0.20.20.4-0.5-0.4-0.4-0.1-0.7
Condit. Reinf. active-inactive response ratio0.20.31.1-0.3-0.1-0.10.4-1.0
Condit. Reinf. active responses0.10.10.2-0.4-0.4-0.3-0.2-0.4
Condit. Reinf. inactive responses0.00.10.20.1-0.2-0.0-0.10.4
Incentive salience index mean0.10.10.3-0.10.00.10.50.3
Condit. Reinf. lever presses0.10.20.5-0.1-0.00.10.60.7
Condit. Reinf. active minus inactive responses1.41.85.80.70.60.91.2-2.4
Condit. Reinf. active-inactive response ratio1.11.25.90.1-0.20.10.4-2.4
Condit. Reinf. active responses1.21.74.70.80.80.91.3-2.2
Condit. Reinf. inactive responses1.01.32.11.11.41.21.30.1
Condit. Reinf. lever presses1.72.33.11.61.41.61.7-1.2
Condit. Reinf. lever reinforcers received1.11.55.60.40.50.61.1-2.4
Conditioned reinforcement - actives0.00.10.10.20.20.3-0.2-0.2
Conditioned reinforcement - inactives0.40.61.5-0.8-0.5-0.6-1.2-0.6
Conditioned locomotion0.00.10.2-0.3-0.2-0.1-0.4-0.1
Patch foraging indifference point 0 sec0.20.40.90.50.90.70.3-0.7
Patch foraging indifference point AUC0.30.51.01.00.70.80.40.3
Delay disc. indifference point, 0s delay1.11.21.91.41.01.00.41.4
Delay disc. indifference point, 16s delay4.65.16.0-2.3-2.3-2.4-2.5-1.8
Delay disc. indifference point, 2s delay4.34.76.52.52.22.31.82.0
Delay disc. indifference point, 24s delay3.43.95.3-2.3-2.0-2.0-2.1-1.3
Delay disc. indifference point, 4s delay0.20.20.50.40.30.1-0.60.7
Delay disc. indifference point, 8s delay0.10.10.50.10.20.2-0.30.7
Indifference point function ln k0.20.31.00.41.00.70.3-0.0
Indifference point function log k0.20.31.00.41.00.70.3-0.0
Patch foraging total patch changes 0 sec0.30.61.10.51.10.90.4-1.0
Patch foraging total patch changes 12 sec0.40.62.10.30.50.50.5-1.4
Patch foraging total patch changes 18 sec0.20.41.6-0.0-0.0-0.1-0.51.3
Patch foraging total patch changes 24 sec0.30.40.70.80.80.70.4-0.4
Patch foraging total patch changes 6 sec1.11.76.5-0.4-0.2-0.4-1.2-2.6
Patch foraging time to switch 0 sec1.32.74.5-2.1-2.0-2.0-1.10.0
Patch foraging water rate 0 sec0.40.81.00.80.90.80.81.0
Patch foraging water rate 12 sec0.61.22.01.41.41.10.80.2
Patch foraging water rate 18 sec0.30.51.10.81.00.60.6-0.1
Patch foraging water rate 24 sec0.50.71.21.10.90.60.41.0
Patch foraging water rate 6 sec0.10.20.50.30.20.1-0.70.3
Seeking ratio, delayed vs. immediate footshock0.20.20.60.40.30.00.40.8
Distance traveled before self-admin0.70.93.40.60.70.30.11.8
Distance traveled after self-admin2.32.96.11.61.71.21.12.5
Extensor digitorum longus weight4.417.521.74.74.54.44.13.0
Bone: elastic displacement0.50.51.4-0.8-0.6-0.6-1.2-0.1
Bone: elastic work0.40.50.80.80.90.80.3-0.5
Bone: endosteal estimation1.83.96.12.02.22.12.5-0.5
Bone: endosteal perimeter1.12.43.81.51.61.52.01.1
Epididymis fat weight0.93.14.22.11.92.01.9-0.2
Delta time in closed arm before/after self-admin0.30.30.90.30.00.30.50.9
Delta time in open arm before/after self-admin1.71.72.51.31.41.61.11.1
Diff in mean of infusions in LGA sessions0.10.10.3-0.3-0.3-0.1-0.3-0.6
Delay discount exponential model param0.30.30.80.40.50.50.9-0.1
Extinction: sum of active levers before priming0.40.51.0-1.0-0.8-0.7-0.4-0.2
Active lever presses in extinction session 60.10.10.4-0.10.40.30.30.6
Bone: final force5.18.111.43.33.43.22.6-0.7
Bone: final moment4.57.210.33.13.23.12.4-0.9
Food consumed during 24 hour testing period1.62.33.51.81.81.91.2-0.4
Glucose0.10.20.6-0.2-0.1-0.1-0.5-0.8
Heart weight0.10.10.20.40.50.50.2-0.2
Delay discount hyperbolic model param0.10.10.20.10.10.10.5-0.3
Intermittent access intake day 1-15 change0.20.50.9-0.8-0.5-0.8-0.90.3
Intermittent access intake escalation0.30.71.2-0.9-0.6-0.9-1.10.2
Intermittent access intake escalation 20.70.81.5-0.9-0.5-1.1-1.2-0.3
Intermitt. access day 1 inactive lever presses0.10.50.8-0.6-0.9-0.7-0.90.2
Intermitt. access day 15 inactive lever presses0.20.51.20.60.81.10.40.5
Intermitt. access escalation Index0.30.50.80.50.70.90.90.2
Intermittent access day 1 total infusions0.50.81.11.00.81.11.10.4
Intermittent access day 15 total infusions0.00.00.2-0.00.00.1-0.00.4
Intermittent access terminal intake (last 3 days)0.10.20.30.40.50.50.40.3
Intermittent access total infusions1.11.31.91.21.11.41.10.9
Intermittent access day 1 locomotion0.30.40.50.60.50.70.70.4
Intermittent access day 15 total locomotion0.00.10.2-0.2-0.20.1-0.4-0.2
Intermittent access total locomotion0.30.30.80.60.40.90.60.1
Intermittent access standard deviation0.81.72.21.31.51.30.81.4
Left kidney weight2.310.516.93.74.13.62.90.9
Right kidney weight2.712.417.64.14.23.83.21.6
Cocaine induced anxiety0.20.40.9-0.4-0.7-0.3-0.31.0
Post-drug Anxiety0.40.50.8-0.7-0.7-0.7-0.9-0.3
Baseline Anxiety0.40.51.60.40.80.2-0.0-1.3
Tail length0.51.93.11.81.61.61.0-0.5
Length with tail0.10.31.00.50.60.20.1-1.0
Length without tail0.41.42.5-1.2-0.9-1.6-1.4-0.6
Times rat made contact with spout2.02.33.91.51.51.60.92.0
Lifetime Intake1.61.92.71.41.41.61.41.0
Liver weight, left0.91.65.8-0.7-0.7-0.90.4-2.4
Liver weight, right0.20.40.6-0.6-0.7-0.80.60.1
Locomotor activity0.20.31.3-0.0-0.1-0.00.3-1.2
Locomotor testing distance0.20.31.00.40.20.40.5-1.0
Locomotor testing rearing0.30.62.6-0.3-0.5-0.40.4-1.6
Locomotion in novel chamber0.40.51.00.60.70.61.00.1
Locomotion in novel chamber post-restriction0.40.61.6-0.7-0.6-0.9-0.3-1.3
Fecal boli incidents, locomotor time 10.30.40.8-0.7-0.9-0.60.6-0.2
Change in fecal boli incidents, locomotor task0.70.71.10.81.10.6-0.3-1.1
Time >=10cm from walls, locomotor time 10.90.91.50.81.21.20.80.6
Bouts of movement, locomotor time 12.93.35.3-2.3-1.9-1.9-1.5-1.4
Total resting periods, locomotor time 13.53.95.7-2.4-2.2-2.1-1.5-1.5
Rest time, locomotor task time 11.11.42.1-1.4-1.4-1.4-0.9-0.4
Distance moved, locomotor task time 10.91.42.71.21.61.40.80.1
Vertical activity count, locomotor time 11.02.43.81.81.72.00.81.1
Time >=10cm from walls, locomotor time 21.52.33.21.51.81.81.21.1
Bouts of movement, locomotor time 20.50.83.30.30.60.61.80.0
Total resting periods, locomotor time 20.61.03.60.60.80.71.90.1
Rest time, locomotor task time 20.00.00.00.10.10.0-0.1-0.2
Distance moved, locomotor task time 20.50.61.10.60.90.7-0.01.1
Vertical activity count, locomotor time 20.20.30.40.50.60.6-0.50.6
Light reinforcement 10.10.20.7-0.5-0.2-0.4-0.1-0.8
Light reinforcement 20.10.10.7-0.10.10.10.2-0.8
Bone: marrow area1.63.45.41.92.01.92.3-0.5
Bone: maximum diameter2.54.66.32.52.42.32.4-0.3
Bone: maximum force4.07.210.13.23.23.02.4-0.9
Bone: maximum moment3.56.28.92.93.02.82.2-1.0
Mean time between licks in bursts0.10.30.6-0.5-0.6-0.4-0.1-0.8
Mean num. licks in bursts5.28.111.43.13.33.42.9-0.0
Cd content in liver1.82.06.7-1.0-1.0-0.8-0.7-2.6
Co content in liver0.30.41.50.10.10.0-1.20.5
Cu content in liver0.81.01.31.11.11.10.50.9
Fe content in liver0.30.41.3-0.4-0.3-0.3-1.10.7
K content in liver0.40.41.00.40.50.60.51.0
Mg content in liver0.40.41.10.10.20.40.81.1
Mn content in liver0.60.71.10.60.60.80.91.0
Na content in liver5.86.27.32.32.42.42.72.7
Rb content in liver2.12.43.9-1.4-1.4-1.2-2.0-1.6
Se content in liver0.20.20.30.40.50.50.30.5
Sr content in liver0.80.71.10.90.80.91.10.4
Zn content in liver2.02.34.61.41.51.52.10.3
Bone: minimum diameter2.13.95.12.22.22.22.30.2
Time in familiar zone, hab. session 10.60.61.6-0.5-0.7-0.6-1.30.4
Time in novel zone, hab. session 10.60.61.70.50.70.71.3-0.4
Total zone transitions, hab. session 12.53.55.52.22.32.31.30.1
Total locomotion distance, hab. session 15.37.510.73.23.33.22.4-0.4
Locomotion velocity, hab. session 14.56.38.42.92.92.92.3-1.1
Time in familiar zone, hab. session 20.30.30.50.70.70.60.50.4
Time in novel zone, hab. session 20.30.31.4-0.3-0.2-0.1-0.0-1.2
Total zone transitions, hab. session 22.43.14.22.02.12.11.4-1.1
Total locomotion distance, hab. session 23.14.05.82.42.42.31.5-1.0
Locomotion velocity, hab. session 23.75.07.12.62.72.61.8-1.0
Novel to familiar place preference ratio0.70.81.3-0.9-1.0-0.9-1.1-0.3
Novelty place preference0.80.91.7-0.9-0.9-1.0-1.30.1
Time in novel zone, NPP test0.70.81.4-0.9-0.9-0.9-1.2-0.3
Total zone transitions, NPP test1.62.33.61.81.71.91.3-0.6
Total locomotion distance, NPP test1.72.43.61.91.81.71.1-1.0
Locomotion velocity, NPP test1.31.83.01.71.61.60.9-0.3
Intraocular pressure0.10.20.50.40.10.30.7-0.2
Delta distance traveled before/after self-admin0.60.60.80.60.80.90.90.7
Delta ambulatory time before/after self-admin0.70.91.30.91.11.10.90.5
Parametrial fat weight2.96.711.02.63.33.12.2-1.3
Pavlov. Cond. lever latency0.91.23.9-0.2-0.1-0.5-2.0-1.4
Pavlov. Cond. magazine entry latency3.95.011.11.61.41.83.32.5
Pavlov. Cond. change in total contacts2.12.26.20.60.00.52.12.5
Pavlov. Cond. index score1.92.46.90.70.40.92.61.8
Pavlov. Cond. latency score1.72.16.20.70.51.02.51.7
Pavlov. Cond. lever contacts2.12.56.90.90.71.12.61.8
Pavlov. Cond. magazine entry number2.22.76.2-0.9-0.6-1.0-2.5-2.3
Pavlov. Cond. intertrial magazine entries2.12.56.5-0.9-1.0-1.2-1.7-2.6
Pavlov. Cond. lever-magazine prob. diff.2.32.88.30.90.61.22.91.8
Pavlov. Cond. response bias2.63.27.10.90.61.02.72.6
Pavlov. Cond. lever latency1.31.72.4-1.4-1.4-1.4-1.50.5
Pavlov. Cond. magazine entry latency0.70.91.4-1.1-1.2-1.1-0.40.6
Pavlov. Cond. change in total contacts1.01.67.80.20.10.20.1-2.8
Pavlov. Cond. index score0.10.10.30.2-0.00.10.5-0.6
Pavlov. Cond. latency score0.10.10.30.20.00.20.5-0.2
Pavlov. Cond. lever contacts1.21.62.51.41.31.41.6-0.4
Pavlov. Cond. magazine entry number1.62.03.01.61.71.61.10.8
Pavlov. Cond. intertrial magazine entries2.53.75.42.02.12.12.3-0.5
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.0-0.2-0.10.4-0.5
Pavlov. Cond. response bias0.20.30.60.40.30.40.8-0.5
Time in closed arm before self-admin0.10.20.30.30.50.50.40.3
Time in closed arm after self-admin0.30.30.6-0.3-0.5-0.7-0.8-0.5
Time in open arm before self-admin1.31.42.3-1.2-1.3-1.5-1.1-0.6
Time in open arm after self-admin2.22.43.71.41.41.61.41.9
Bone: periosteal estimation3.57.49.83.13.13.02.90.2
Bone: periosteal perimeter2.13.65.32.02.02.12.30.4
Bone: post-yield work3.14.65.92.12.22.22.4-1.8
Progressive ratio test 1 active lever presses0.50.61.20.60.50.81.10.8
Progressive ratio test 1 breakpoint0.40.51.00.60.40.71.00.7
Progressive ratio test 1 inactive lever presses0.10.10.20.2-0.20.50.50.5
Progressive ratio test 2 active lever presses0.00.00.20.0-0.20.10.40.0
Progressive ratio test 2 breakpoint0.00.00.1-0.0-0.30.00.4-0.0
Progressive ratio test 2 inactive lever presses0.20.30.50.60.30.70.70.4
Incentive Sensitization - Responses0.00.00.1-0.2-0.40.10.2-0.1
Incentive Sensitization - Breakpoint0.00.00.1-0.1-0.30.10.2-0.1
Sum of active levers in priming session hrs 5-60.90.81.5-1.2-0.9-0.8-0.1-1.0
Progressive ratio0.10.20.90.20.00.0-0.0-1.0
Food seeking constrained by brief footshock1.01.21.8-1.0-1.2-1.3-1.3-0.5
Seeking ratio, punishment vs. effort0.30.41.80.00.20.20.31.3
Retroperitoneal fat weight1.35.76.52.32.32.32.6-2.4
Reaction time number correct0.50.91.5-1.0-1.0-1.2-0.6-0.8
Reaction time mean minus median0.10.30.60.30.70.60.30.4
Reaction time mean minus median AUC0.10.20.6-0.20.30.2-0.2-0.8
Reaction time num false alarms0.71.01.7-1.0-1.0-1.1-1.30.1
Reaction time num false alarms AUC0.40.60.8-0.9-0.8-0.9-0.80.1
Reaction time trials correct on left0.50.91.5-1.0-1.0-1.2-0.6-0.8
Reaction time trials on left0.50.91.5-1.0-1.0-1.2-0.6-0.8
Reaction time mean0.20.30.40.50.60.60.60.4
Reaction time mean AUC0.10.10.30.10.40.30.50.3
Median of all reaction times0.20.30.60.50.50.60.80.4
Reaction time omissions0.10.10.3-0.5-0.2-0.20.4-0.3
Reaction time false alarm rate0.20.20.7-0.3-0.3-0.2-0.50.8
Reaction time premature initiation rate1.01.41.81.31.41.11.01.2
Reaction time premature initiations0.20.30.50.50.70.30.50.6
Std. dev. reaction times0.20.30.60.50.70.70.5-0.1
Reaction time trials completed0.50.91.5-1.0-1.0-1.2-0.6-0.8
Reaction time trials AUC0.30.61.1-0.8-0.8-1.0-0.4-0.7
Run reversals in cocaine runway, females5.04.96.12.52.32.21.72.4
Run reversals in cocaine runway, males0.50.50.7-0.8-0.7-0.7-0.9-0.3
Latency to leave start box in cocaine runway0.20.31.2-0.0-0.30.1-0.2-1.1
Latency to leave start box in cocaine runway, F0.10.20.4-0.2-0.5-0.30.3-0.6
Latency to leave start box in cocaine runway, M0.40.41.20.10.10.4-0.7-1.1
Std. dev. time between licks in bursts0.20.31.10.20.20.41.0-0.5
Total sessions with >9 infusions5.66.88.32.82.72.92.91.5
Short access day 1 total inactive lever presses0.40.51.00.70.81.00.60.1
Short access day 10 total inactive lever presses0.71.72.6-1.4-1.3-1.2-1.6-0.8
Short access day 1 total infusions1.21.52.31.41.31.31.50.2
Short access day 10 total infusions2.83.64.71.91.92.22.01.3
Short access total infusions3.54.56.02.32.22.42.31.2
Short access day 1 locomotion0.50.60.80.70.90.80.60.8
Short access day 10 total locomotion2.54.65.82.21.82.42.41.8
Short access total locomotion3.74.46.02.32.22.42.20.9
One hour access (0.3 mA shock)0.10.10.20.20.10.50.50.1
Compulsive drug intake0.10.20.4-0.1-0.6-0.20.2-0.6
One hour access (shock baseline)0.00.00.0-0.20.00.0-0.20.0
Social response proportion0.40.42.0-0.30.10.10.2-1.4
Social responses0.50.61.1-1.0-0.7-0.6-0.1-1.1
Social time1.01.42.2-1.2-1.1-1.0-1.0-1.5
Soleus weight2.36.710.33.23.23.02.00.4
Bone: stiffness2.84.67.02.62.62.41.6-0.9
Tibialis anterior weight6.521.930.45.55.45.24.22.3
Time to tail flick, vehicle, before self-admin0.10.10.40.60.10.40.2-0.0
Time to tail flick, vehicle, after self-admin2.43.24.4-2.1-1.9-1.7-1.2-1.9
Time to tail flick, test, before self-admin0.00.00.10.3-0.20.40.10.1
Time to tail flick, test, after self-admin0.30.30.8-0.7-0.1-0.10.10.9
Delta time to tail flick, vehicle, before/after SA0.30.30.7-0.9-0.4-0.5-0.2-0.7
Delta time to tail flick, test, before/after SA0.30.30.90.10.60.40.50.9
Tibia length0.10.31.00.20.40.2-0.3-1.0
Ambulatory time before self-admin0.40.52.40.30.3-0.1-0.41.5
Ambulatory time after self-admin2.32.76.51.61.51.10.92.6
Bone: tissue strength0.30.41.40.30.40.30.1-1.2
Total heroin consumption0.40.40.6-0.8-0.8-0.60.3-0.7
Bone: trabecular number0.91.42.11.31.41.30.8-1.1
Bone: trabecular spacing0.81.01.7-1.3-1.2-1.1-0.11.0
Bone: trabecular thickness2.12.64.12.01.91.70.7-1.4
Bone: trabecular tissue density0.10.20.90.10.0-0.1-0.3-0.9
Water consumed over 24 hours1.21.66.2-0.6-0.6-0.5-0.92.5
Number of responses in last shaping day0.10.10.20.40.20.10.5-0.4