LOC134485107

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC134485107 0.03 0.02 1.6e-06 0.03 0.03 0.03 0.03 3.1e-05 5.0e-06 3.5e-05 4.0e-05
2 BLA gene expression LOC134485107 0.05 0.05 6.0e-03 0.02 0.03 0.03 0.03 2.9e-02 8.6e-03 9.8e-03 1.5e-02
3 Adipose gene expression LOC134485107 0.06 0.09 8.1e-03 0.01 -0 0 0 4.3e-02 4.0e-01 2.9e-01 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.20.30.4-0.1
Area under the delay curve1.21.41.61.11.1-1.3
BMI with tail0.10.30.3-0.6-0.50.5
BMI without tail0.61.82.11.31.3-1.4
Body weight2.611.411.73.43.4-3.3
Weight adjusted by age0.10.10.2-0.4-0.40.1
Bone surface0.71.21.61.11.3-0.9
Bone volume0.71.21.51.11.2-1.0
Breakpoint value in progressive ratio session3.13.74.11.91.9-2.0
Number of licking bursts3.04.95.2-2.2-2.32.2
Context. condit. distance diff. score0.00.00.0-0.1-0.1-0.1
Locomotion velocity, session 11.01.11.3-1.1-0.91.1
Locomotion distance, session 10.60.70.80.90.9-0.7
Locomotion velocity, session 20.30.40.5-0.7-0.60.5
Locomotion distance, session 21.52.02.4-1.4-1.41.6
Locomotion velocity, session 30.40.50.5-0.7-0.70.6
Locomotion distance, session 34.24.64.92.22.1-2.1
Stereotopy head waving bouts, day 31.01.21.4-1.1-1.01.2
Stereotopy head waving duration, day 32.22.62.8-1.7-1.51.6
Locomotion velocity, session 70.10.20.20.40.5-0.4
Locomotion distance, session 70.10.10.10.40.4-0.3
Stereotopy head waving bouts, day 71.31.41.6-1.1-1.31.2
Stereotopy head waving duration, day 71.82.22.4-1.5-1.61.4
Locomotion velocity, session 84.25.15.2-2.3-2.22.3
Locomotion distance, session 80.60.90.9-0.9-0.90.9
Degree of sensitization distance1.21.21.5-1.2-1.01.1
Degree of sensitization stereotypy0.60.70.9-0.7-0.90.7
Conditioned locomotion0.00.10.1-0.2-0.30.2
Cocaine response after cond. corrected0.10.10.10.30.1-0.4
Cocaine response after cond. not corrected0.00.00.10.20.1-0.2
Cocaine response before conditioning0.50.60.80.80.9-0.4
Saline control response0.00.00.00.10.0-0.2
Bone: connectivity density0.00.00.0-0.10.10.2
Bone: cortical apparent density2.53.53.9-1.8-1.82.0
Bone: cortical area1.92.93.01.71.7-1.7
Bone: cortical porosity1.51.61.8-1.2-1.21.3
Bone: cortical porosity2.02.22.5-1.4-1.41.6
Bone: cortical thickness0.81.41.51.21.1-1.2
Bone: cortical thickness0.50.60.6-0.7-0.80.7
Bone: cortical tissue density2.93.94.4-1.9-1.92.1
Condit. Reinf. active minus inactive responses0.20.30.3-0.5-0.50.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.30.3
Condit. Reinf. active responses2.12.52.9-1.5-1.51.7
Condit. Reinf. inactive responses1.92.32.8-1.4-1.51.7
Incentive salience index mean0.10.20.2-0.4-0.30.4
Condit. Reinf. lever presses0.00.00.00.10.10.0
Condit. Reinf. active minus inactive responses3.03.94.41.91.9-2.1
Condit. Reinf. active-inactive response ratio0.30.30.50.60.4-0.7
Condit. Reinf. active responses4.76.56.62.52.5-2.6
Condit. Reinf. inactive responses3.54.55.02.12.2-2.1
Condit. Reinf. lever presses9.813.613.73.73.7-3.7
Condit. Reinf. lever reinforcers received5.27.27.32.72.7-2.7
Conditioned reinforcement - actives0.40.60.7-0.8-0.80.7
Conditioned reinforcement - inactives0.30.50.50.70.6-0.7
Conditioned locomotion2.83.73.9-2.0-1.82.0
Patch foraging indifference point 0 sec0.10.20.20.40.4-0.4
Patch foraging indifference point AUC0.50.80.9-0.9-1.00.7
Delay disc. indifference point, 0s delay1.21.31.71.01.1-1.3
Delay disc. indifference point, 16s delay3.03.33.71.81.8-1.9
Delay disc. indifference point, 2s delay1.41.62.11.11.2-1.4
Delay disc. indifference point, 24s delay2.42.72.81.71.7-1.6
Delay disc. indifference point, 4s delay0.20.20.30.40.4-0.6
Delay disc. indifference point, 8s delay0.00.00.00.10.20.0
Indifference point function ln k0.40.70.70.80.9-0.8
Indifference point function log k0.40.70.70.80.9-0.8
Patch foraging total patch changes 0 sec0.10.30.30.60.5-0.5
Patch foraging total patch changes 12 sec0.10.10.20.30.3-0.4
Patch foraging total patch changes 18 sec0.30.50.5-0.7-0.70.7
Patch foraging total patch changes 24 sec0.40.70.90.80.7-0.9
Patch foraging total patch changes 6 sec0.00.00.0-0.0-0.1-0.1
Patch foraging time to switch 0 sec0.20.50.6-0.8-0.70.7
Patch foraging water rate 0 sec0.61.31.4-1.1-1.21.2
Patch foraging water rate 12 sec0.30.70.90.80.6-1.0
Patch foraging water rate 18 sec0.10.20.2-0.4-0.40.3
Patch foraging water rate 24 sec0.00.00.00.20.1-0.2
Patch foraging water rate 6 sec0.30.40.40.60.6-0.6
Seeking ratio, delayed vs. immediate footshock1.61.92.11.41.3-1.4
Distance traveled before self-admin1.62.02.21.41.4-1.5
Distance traveled after self-admin2.32.83.21.81.8-1.4
Extensor digitorum longus weight0.20.90.9-1.0-1.00.9
Bone: elastic displacement0.00.00.0-0.0-0.0-0.2
Bone: elastic work2.22.93.21.71.7-1.8
Bone: endosteal estimation1.53.43.71.91.9-1.7
Bone: endosteal perimeter1.73.53.61.81.9-1.9
Epididymis fat weight0.10.30.5-0.3-0.40.7
Delta time in closed arm before/after self-admin0.40.40.50.60.7-0.6
Delta time in open arm before/after self-admin0.40.40.6-0.6-0.80.6
Diff in mean of infusions in LGA sessions0.00.00.00.10.1-0.1
Delay discount exponential model param1.21.31.6-1.1-1.11.3
Extinction: sum of active levers before priming2.52.83.51.71.9-1.3
Active lever presses in extinction session 61.61.61.91.21.4-1.2
Bone: final force1.52.52.71.61.6-1.4
Bone: final moment2.23.53.82.01.9-1.7
Food consumed during 24 hour testing period0.50.70.80.90.9-0.8
Glucose0.20.40.5-0.5-0.60.7
Heart weight0.30.40.70.60.5-0.8
Delay discount hyperbolic model param0.91.01.2-0.9-1.01.1
Intermittent access intake day 1-15 change0.71.41.81.11.1-1.3
Intermittent access intake escalation0.30.70.90.70.8-0.9
Intermittent access intake escalation 21.82.02.31.41.4-1.5
Intermitt. access day 1 inactive lever presses1.76.57.32.72.7-2.2
Intermitt. access day 15 inactive lever presses0.71.31.51.21.2-1.1
Intermitt. access escalation Index0.00.00.00.20.1-0.1
Intermittent access day 1 total infusions0.81.31.4-1.1-1.21.1
Intermittent access day 15 total infusions0.00.00.10.0-0.0-0.3
Intermittent access terminal intake (last 3 days)0.10.10.20.20.1-0.5
Intermittent access total infusions0.10.20.2-0.4-0.50.3
Intermittent access day 1 locomotion0.20.20.3-0.5-0.50.5
Intermittent access day 15 total locomotion0.00.00.1-0.3-0.10.2
Intermittent access total locomotion0.70.91.0-1.0-0.90.9
Intermittent access standard deviation2.65.45.72.32.3-2.4
Left kidney weight1.36.27.52.72.5-2.2
Right kidney weight2.09.210.63.33.1-2.7
Cocaine induced anxiety0.00.00.0-0.1-0.0-0.1
Post-drug Anxiety0.20.20.20.40.4-0.5
Baseline Anxiety0.10.20.30.50.4-0.2
Tail length5.722.223.04.84.7-4.7
Length with tail7.331.732.95.75.6-5.6
Length without tail2.37.57.82.82.7-2.7
Times rat made contact with spout1.31.51.7-1.2-1.21.3
Lifetime Intake0.40.50.6-0.7-0.80.6
Liver weight, left0.20.40.5-0.5-0.70.7
Liver weight, right0.00.10.1-0.2-0.40.2
Locomotor activity0.81.21.6-1.0-1.01.3
Locomotor testing distance1.32.32.8-1.5-1.41.7
Locomotor testing rearing2.14.24.5-2.1-2.12.0
Locomotion in novel chamber0.00.00.0-0.20.00.1
Locomotion in novel chamber post-restriction0.61.01.20.81.0-1.1
Fecal boli incidents, locomotor time 11.42.02.3-1.4-1.31.5
Change in fecal boli incidents, locomotor task0.00.00.0-0.1-0.1-0.1
Time >=10cm from walls, locomotor time 10.00.00.0-0.0-0.10.1
Bouts of movement, locomotor time 12.63.04.21.51.6-2.0
Total resting periods, locomotor time 12.73.04.21.51.6-2.1
Rest time, locomotor task time 10.10.10.2-0.4-0.40.2
Distance moved, locomotor task time 10.10.10.1-0.2-0.30.3
Vertical activity count, locomotor time 10.30.80.90.90.9-0.8
Time >=10cm from walls, locomotor time 20.20.20.3-0.3-0.50.6
Bouts of movement, locomotor time 20.20.30.70.30.3-0.8
Total resting periods, locomotor time 20.10.10.30.10.1-0.6
Rest time, locomotor task time 20.00.00.00.0-0.1-0.0
Distance moved, locomotor task time 20.30.40.4-0.6-0.70.6
Vertical activity count, locomotor time 20.30.50.60.70.6-0.7
Light reinforcement 10.10.30.4-0.6-0.70.3
Light reinforcement 23.14.85.8-2.4-2.21.9
Bone: marrow area1.63.53.81.92.0-1.7
Bone: maximum diameter1.52.82.81.71.7-1.7
Bone: maximum force2.95.15.52.42.3-2.1
Bone: maximum moment3.76.46.92.62.6-2.4
Mean time between licks in bursts0.00.10.10.30.2-0.3
Mean num. licks in bursts0.91.41.61.21.3-1.1
Cd content in liver0.50.50.6-0.7-0.70.8
Co content in liver0.80.91.0-1.0-0.90.9
Cu content in liver1.11.31.41.11.1-1.2
Fe content in liver0.30.40.4-0.6-0.60.6
K content in liver0.20.20.30.50.4-0.5
Mg content in liver0.10.10.2-0.3-0.40.2
Mn content in liver0.30.30.5-0.4-0.50.7
Na content in liver1.41.51.61.31.1-1.3
Rb content in liver0.00.00.0-0.1-0.10.0
Se content in liver5.76.76.9-2.5-2.62.6
Sr content in liver0.40.30.5-0.5-0.50.7
Zn content in liver3.64.04.2-2.0-2.02.0
Bone: minimum diameter5.09.19.43.13.0-3.0
Time in familiar zone, hab. session 10.30.30.30.60.5-0.5
Time in novel zone, hab. session 10.50.50.7-0.8-0.90.5
Total zone transitions, hab. session 10.10.10.10.40.3-0.2
Total locomotion distance, hab. session 12.73.84.02.01.9-1.9
Locomotion velocity, hab. session 11.41.92.11.41.4-1.3
Time in familiar zone, hab. session 22.22.42.61.41.6-1.6
Time in novel zone, hab. session 21.41.41.5-1.1-1.21.2
Total zone transitions, hab. session 21.82.32.6-1.4-1.61.5
Total locomotion distance, hab. session 20.00.00.00.20.1-0.2
Locomotion velocity, hab. session 20.00.00.0-0.0-0.10.1
Novel to familiar place preference ratio0.40.40.50.70.5-0.7
Novelty place preference0.20.30.30.60.4-0.5
Time in novel zone, NPP test0.10.10.10.30.2-0.3
Total zone transitions, NPP test0.10.20.3-0.3-0.30.5
Total locomotion distance, NPP test2.83.94.12.02.0-1.9
Locomotion velocity, NPP test3.14.44.62.12.2-2.0
Intraocular pressure0.00.00.00.10.1-0.0
Delta distance traveled before/after self-admin0.20.30.30.50.6-0.4
Delta ambulatory time before/after self-admin0.20.20.30.50.5-0.2
Parametrial fat weight0.30.80.8-0.9-0.90.8
Pavlov. Cond. lever latency0.00.00.00.00.1-0.2
Pavlov. Cond. magazine entry latency0.40.50.6-0.7-0.80.6
Pavlov. Cond. change in total contacts0.10.10.1-0.3-0.40.3
Pavlov. Cond. index score0.30.40.4-0.6-0.60.7
Pavlov. Cond. latency score0.10.10.1-0.3-0.40.4
Pavlov. Cond. lever contacts0.10.20.20.50.4-0.4
Pavlov. Cond. magazine entry number0.30.30.40.60.7-0.5
Pavlov. Cond. intertrial magazine entries0.60.70.8-0.8-0.80.9
Pavlov. Cond. lever-magazine prob. diff.0.50.60.6-0.7-0.80.8
Pavlov. Cond. response bias0.10.10.2-0.3-0.40.4
Pavlov. Cond. lever latency5.47.47.4-2.7-2.72.7
Pavlov. Cond. magazine entry latency4.04.85.02.22.2-2.1
Pavlov. Cond. change in total contacts8.213.114.03.63.6-3.7
Pavlov. Cond. index score6.28.38.52.92.9-2.9
Pavlov. Cond. latency score5.67.47.62.72.8-2.7
Pavlov. Cond. lever contacts6.08.38.42.92.9-2.9
Pavlov. Cond. magazine entry number3.94.85.0-2.2-2.22.2
Pavlov. Cond. intertrial magazine entries2.03.03.8-1.6-1.61.9
Pavlov. Cond. lever-magazine prob. diff.6.07.98.02.82.8-2.8
Pavlov. Cond. response bias6.99.39.43.13.1-3.0
Time in closed arm before self-admin0.40.50.7-0.7-0.90.5
Time in closed arm after self-admin1.11.21.60.91.0-1.3
Time in open arm before self-admin2.02.23.01.61.7-1.1
Time in open arm after self-admin0.10.10.20.50.30.0
Bone: periosteal estimation2.55.35.52.32.3-2.2
Bone: periosteal perimeter2.54.24.62.02.0-2.1
Bone: post-yield work2.13.13.31.81.8-1.7
Progressive ratio test 1 active lever presses0.00.00.00.10.10.0
Progressive ratio test 1 breakpoint0.00.10.10.30.3-0.1
Progressive ratio test 1 inactive lever presses0.40.60.60.80.8-0.7
Progressive ratio test 2 active lever presses0.10.10.2-0.4-0.30.4
Progressive ratio test 2 breakpoint0.20.20.3-0.5-0.40.5
Progressive ratio test 2 inactive lever presses1.11.71.81.21.3-1.3
Incentive Sensitization - Responses0.30.40.4-0.6-0.60.6
Incentive Sensitization - Breakpoint0.30.40.4-0.7-0.60.6
Sum of active levers in priming session hrs 5-60.20.10.3-0.3-0.20.5
Progressive ratio0.00.00.0-0.10.10.0
Food seeking constrained by brief footshock3.44.14.62.12.1-1.9
Seeking ratio, punishment vs. effort0.71.11.21.00.9-1.1
Retroperitoneal fat weight0.83.23.3-1.7-1.81.8
Reaction time number correct0.20.30.4-0.5-0.60.6
Reaction time mean minus median0.00.10.10.30.3-0.2
Reaction time mean minus median AUC0.00.10.20.40.3-0.2
Reaction time num false alarms1.42.02.1-1.4-1.51.4
Reaction time num false alarms AUC1.82.83.0-1.6-1.61.7
Reaction time trials correct on left0.20.30.4-0.5-0.60.6
Reaction time trials on left0.20.30.4-0.5-0.60.6
Reaction time mean0.10.20.3-0.3-0.30.6
Reaction time mean AUC0.20.40.7-0.5-0.50.8
Median of all reaction times0.40.50.9-0.6-0.60.9
Reaction time omissions0.40.50.6-0.7-0.70.7
Reaction time false alarm rate0.71.01.1-1.0-1.01.0
Reaction time premature initiation rate0.10.10.10.30.3-0.4
Reaction time premature initiations0.00.00.0-0.1-0.1-0.0
Std. dev. reaction times0.00.00.00.20.10.0
Reaction time trials completed0.20.30.4-0.5-0.60.6
Reaction time trials AUC0.30.60.7-0.7-0.80.8
Run reversals in cocaine runway, females0.00.00.00.00.10.0
Run reversals in cocaine runway, males1.21.21.6-1.1-1.01.2
Latency to leave start box in cocaine runway0.00.00.0-0.1-0.10.1
Latency to leave start box in cocaine runway, F0.30.40.4-0.6-0.60.6
Latency to leave start box in cocaine runway, M0.20.20.20.40.3-0.5
Std. dev. time between licks in bursts0.81.11.61.01.0-1.3
Total sessions with >9 infusions2.22.63.2-1.5-1.51.8
Short access day 1 total inactive lever presses1.01.31.51.11.1-1.2
Short access day 10 total inactive lever presses2.86.97.52.52.6-2.7
Short access day 1 total infusions0.00.00.10.20.1-0.3
Short access day 10 total infusions0.60.71.0-0.8-0.81.0
Short access total infusions0.81.11.1-1.0-1.01.1
Short access day 1 locomotion2.73.44.0-1.8-1.82.0
Short access day 10 total locomotion0.30.60.90.80.9-0.5
Short access total locomotion1.11.41.7-1.1-1.11.3
One hour access (0.3 mA shock)0.91.11.31.01.0-1.1
Compulsive drug intake0.91.11.61.10.7-1.2
One hour access (shock baseline)0.00.00.00.00.2-0.1
Social response proportion4.04.65.12.02.1-2.3
Social responses0.60.81.00.81.0-0.9
Social time2.02.83.11.71.8-1.5
Soleus weight0.20.50.5-0.7-0.60.7
Bone: stiffness1.62.62.81.71.7-1.4
Tibialis anterior weight0.10.20.3-0.4-0.50.5
Time to tail flick, vehicle, before self-admin0.80.91.3-0.8-0.81.1
Time to tail flick, vehicle, after self-admin1.72.22.41.41.5-1.5
Time to tail flick, test, before self-admin0.50.50.5-0.7-0.70.7
Time to tail flick, test, after self-admin0.00.00.1-0.3-0.20.0
Delta time to tail flick, vehicle, before/after SA1.41.41.41.11.2-1.2
Delta time to tail flick, test, before/after SA0.00.00.0-0.00.0-0.2
Tibia length1.95.15.62.32.4-2.1
Ambulatory time before self-admin1.52.32.51.51.5-1.6
Ambulatory time after self-admin3.84.55.22.22.3-1.8
Bone: tissue strength3.83.84.22.11.9-1.9
Total heroin consumption0.50.60.80.90.9-0.6
Bone: trabecular number0.40.60.90.80.9-0.6
Bone: trabecular spacing1.01.31.51.21.0-1.2
Bone: trabecular thickness0.30.40.4-0.7-0.70.6
Bone: trabecular tissue density2.02.93.1-1.8-1.71.7
Water consumed over 24 hours0.20.30.30.50.6-0.4
Number of responses in last shaping day0.50.60.90.60.6-1.0