LOC134483968

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134483968 0.06 0.04 1.0e-05 0.03 0.04 0.03 0.03 1.1e-04 2.1e-05 4.6e-04 1.2e-04
2 Liver mRNA stability LOC134483968 0.03 0.02 5.1e-03 0.02 0.02 0 0.02 3.1e-03 4.3e-03 1.3e-01 6.2e-03
3 PL gene expression LOC134483968 0.06 0.04 6.2e-04 0.03 0.03 0.03 0.02 4.5e-04 1.8e-04 4.3e-04 1.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.70.90.90.6-0.9
Area under the delay curve0.40.51.4-0.20.2-1.2
BMI with tail3.110.617.42.62.8-4.2
BMI without tail0.92.97.10.51.1-2.7
Body weight3.314.417.43.33.8-4.2
Weight adjusted by age0.71.11.61.31.2-0.4
Bone surface2.23.96.42.51.9-1.3
Bone volume1.01.83.61.91.2-0.7
Breakpoint value in progressive ratio session1.92.33.41.91.80.0
Number of licking bursts0.00.00.0-0.1-0.1-0.2
Context. condit. distance diff. score0.50.60.8-0.9-0.4-0.9
Locomotion velocity, session 10.50.51.1-0.60.2-1.0
Locomotion distance, session 11.11.43.30.21.0-1.8
Locomotion velocity, session 22.53.03.81.62.0-1.5
Locomotion distance, session 20.40.61.3-0.00.6-1.2
Locomotion velocity, session 31.21.33.70.20.5-1.9
Locomotion distance, session 30.10.10.4-0.20.1-0.6
Stereotopy head waving bouts, day 30.70.82.1-0.4-0.2-1.5
Stereotopy head waving duration, day 30.50.61.6-0.5-0.1-1.3
Locomotion velocity, session 70.10.10.40.00.1-0.6
Locomotion distance, session 70.60.71.6-0.7-0.2-1.3
Stereotopy head waving bouts, day 70.30.40.70.80.6-0.1
Stereotopy head waving duration, day 71.51.82.51.61.5-0.8
Locomotion velocity, session 80.40.40.7-0.90.0-0.7
Locomotion distance, session 80.40.61.1-0.8-0.4-1.1
Degree of sensitization distance0.50.61.7-0.1-0.1-1.3
Degree of sensitization stereotypy1.31.42.51.61.3-0.0
Conditioned locomotion0.50.50.60.60.7-0.8
Cocaine response after cond. corrected0.91.12.0-1.4-0.8-0.8
Cocaine response after cond. not corrected0.40.50.9-1.0-0.6-0.3
Cocaine response before conditioning1.11.31.91.40.71.2
Saline control response2.22.94.51.42.1-1.5
Bone: connectivity density1.82.93.01.71.6-1.7
Bone: cortical apparent density0.20.30.50.50.70.3
Bone: cortical area0.91.42.51.61.2-0.3
Bone: cortical porosity0.20.20.6-0.00.10.8
Bone: cortical porosity0.10.10.10.00.30.4
Bone: cortical thickness1.93.25.71.82.4-0.8
Bone: cortical thickness0.10.20.30.10.6-0.4
Bone: cortical tissue density0.30.40.70.70.80.3
Condit. Reinf. active minus inactive responses0.91.01.41.21.2-0.5
Condit. Reinf. active-inactive response ratio0.30.30.60.60.8-0.2
Condit. Reinf. active responses1.01.32.31.51.2-0.4
Condit. Reinf. inactive responses0.10.20.50.7-0.10.1
Incentive salience index mean1.21.51.81.31.3-1.0
Condit. Reinf. lever presses0.91.31.61.31.1-1.0
Condit. Reinf. active minus inactive responses0.40.61.50.3-0.21.2
Condit. Reinf. active-inactive response ratio0.40.51.10.4-0.51.1
Condit. Reinf. active responses0.20.20.30.60.40.4
Condit. Reinf. inactive responses0.10.10.3-0.10.5-0.4
Condit. Reinf. lever presses0.91.22.41.51.1-0.2
Condit. Reinf. lever reinforcers received0.30.50.70.80.70.5
Conditioned reinforcement - actives0.50.92.30.6-0.21.5
Conditioned reinforcement - inactives0.20.30.70.80.10.5
Conditioned locomotion0.81.01.6-1.2-1.30.3
Patch foraging indifference point 0 sec0.40.81.00.81.0-0.9
Patch foraging indifference point AUC1.72.44.42.11.50.7
Delay disc. indifference point, 0s delay0.80.91.5-1.0-0.4-1.2
Delay disc. indifference point, 16s delay0.20.20.30.50.3-0.4
Delay disc. indifference point, 2s delay0.10.10.1-0.3-0.3-0.3
Delay disc. indifference point, 24s delay0.30.30.9-0.20.2-0.9
Delay disc. indifference point, 4s delay1.21.33.6-0.20.5-1.9
Delay disc. indifference point, 8s delay0.60.71.3-1.2-0.6-0.6
Indifference point function ln k3.35.710.8-3.3-2.4-0.8
Indifference point function log k3.35.710.8-3.3-2.4-0.8
Patch foraging total patch changes 0 sec0.40.71.00.51.0-0.9
Patch foraging total patch changes 12 sec5.16.69.73.03.1-1.0
Patch foraging total patch changes 18 sec0.60.91.41.21.10.2
Patch foraging total patch changes 24 sec4.06.98.82.83.0-2.1
Patch foraging total patch changes 6 sec1.11.62.11.11.4-1.2
Patch foraging time to switch 0 sec0.40.81.41.20.8-0.5
Patch foraging water rate 0 sec0.40.91.4-1.2-1.00.6
Patch foraging water rate 12 sec1.73.57.2-2.7-1.90.0
Patch foraging water rate 18 sec1.32.03.5-1.9-1.0-1.2
Patch foraging water rate 24 sec1.42.03.5-1.9-1.50.3
Patch foraging water rate 6 sec1.92.85.7-2.4-1.6-0.1
Seeking ratio, delayed vs. immediate footshock0.10.10.20.10.1-0.5
Distance traveled before self-admin2.12.85.12.31.7-0.4
Distance traveled after self-admin0.40.50.91.00.70.4
Extensor digitorum longus weight5.220.424.14.64.9-4.0
Bone: elastic displacement0.50.61.2-1.1-0.60.3
Bone: elastic work0.71.01.60.31.1-1.3
Bone: endosteal estimation0.41.02.2-0.7-1.5-0.4
Bone: endosteal perimeter0.61.43.5-0.6-1.90.5
Epididymis fat weight0.31.12.8-0.5-1.70.5
Delta time in closed arm before/after self-admin2.62.45.9-0.21.1-2.4
Delta time in open arm before/after self-admin2.52.55.12.31.50.3
Diff in mean of infusions in LGA sessions1.72.13.31.41.8-0.9
Delay discount exponential model param0.40.51.40.1-0.31.2
Extinction: sum of active levers before priming3.23.54.62.12.0-1.3
Active lever presses in extinction session 62.92.95.62.41.80.1
Bone: final force1.52.53.41.91.6-1.2
Bone: final moment1.62.53.51.91.6-1.2
Food consumed during 24 hour testing period0.30.40.90.0-0.40.9
Glucose1.82.84.7-1.9-2.20.0
Heart weight1.21.93.7-1.2-0.8-1.9
Delay discount hyperbolic model param0.40.41.10.2-0.21.1
Intermittent access intake day 1-15 change1.12.35.3-0.5-1.12.3
Intermittent access intake escalation1.42.96.8-0.6-1.32.6
Intermittent access intake escalation 21.01.23.30.2-0.41.8
Intermitt. access day 1 inactive lever presses0.31.12.5-0.7-0.71.6
Intermitt. access day 15 inactive lever presses0.71.52.91.71.2-0.3
Intermitt. access escalation Index0.60.91.7-1.3-1.00.2
Intermittent access day 1 total infusions0.50.82.3-0.2-0.3-1.5
Intermittent access day 15 total infusions1.21.82.9-0.9-1.71.3
Intermittent access terminal intake (last 3 days)0.10.20.40.2-0.60.2
Intermittent access total infusions0.20.20.5-0.2-0.7-0.3
Intermittent access day 1 locomotion0.60.72.10.00.1-1.4
Intermittent access day 15 total locomotion0.10.10.40.70.1-0.0
Intermittent access total locomotion0.30.40.60.8-0.0-0.7
Intermittent access standard deviation0.30.71.4-0.4-0.71.2
Left kidney weight0.00.20.4-0.1-0.6-0.4
Right kidney weight0.00.10.30.0-0.5-0.2
Cocaine induced anxiety0.20.30.50.60.30.7
Post-drug Anxiety0.30.30.70.80.60.1
Baseline Anxiety0.50.61.50.00.5-1.2
Tail length0.10.51.00.41.0-0.6
Length with tail0.93.95.71.92.4-1.5
Length without tail2.16.99.32.53.0-2.3
Times rat made contact with spout0.10.10.1-0.20.4-0.3
Lifetime Intake0.30.40.5-0.5-0.6-0.7
Liver weight, left1.01.62.1-1.5-1.40.9
Liver weight, right1.42.44.1-2.0-1.7-0.2
Locomotor activity1.21.84.3-2.1-1.0-0.3
Locomotor testing distance1.22.25.0-2.2-1.1-0.6
Locomotor testing rearing0.91.74.0-2.0-1.1-0.0
Locomotion in novel chamber1.01.31.9-1.0-1.40.9
Locomotion in novel chamber post-restriction1.22.02.5-1.2-1.61.4
Fecal boli incidents, locomotor time 10.50.82.10.4-0.31.4
Change in fecal boli incidents, locomotor task1.71.73.0-1.7-1.3-0.6
Time >=10cm from walls, locomotor time 11.21.32.0-0.3-1.31.4
Bouts of movement, locomotor time 11.11.22.80.70.71.7
Total resting periods, locomotor time 11.11.22.50.80.71.6
Rest time, locomotor task time 11.62.12.6-1.1-1.51.6
Distance moved, locomotor task time 10.30.50.90.50.6-0.9
Vertical activity count, locomotor time 10.20.40.6-0.8-0.80.0
Time >=10cm from walls, locomotor time 20.60.92.40.6-0.21.5
Bouts of movement, locomotor time 20.71.01.61.21.3-0.3
Total resting periods, locomotor time 20.30.50.80.90.9-0.1
Rest time, locomotor task time 22.32.94.0-1.9-2.01.1
Distance moved, locomotor task time 20.40.50.80.80.90.2
Vertical activity count, locomotor time 20.10.10.3-0.6-0.20.2
Light reinforcement 10.10.20.5-0.2-0.10.7
Light reinforcement 20.50.81.40.8-0.41.2
Bone: marrow area0.61.22.8-0.9-1.7-0.3
Bone: maximum diameter0.30.51.41.20.5-0.0
Bone: maximum force2.64.66.72.62.1-1.7
Bone: maximum moment2.64.66.52.52.1-1.7
Mean time between licks in bursts0.41.02.6-0.50.3-1.6
Mean num. licks in bursts0.00.10.1-0.40.00.3
Cd content in liver0.50.50.8-0.4-0.70.9
Co content in liver1.11.32.5-1.6-0.90.7
Cu content in liver0.00.00.1-0.3-0.10.2
Fe content in liver0.00.00.1-0.2-0.1-0.3
K content in liver0.50.50.80.50.6-0.9
Mg content in liver0.50.51.4-0.30.1-1.2
Mn content in liver2.73.04.72.21.9-0.8
Na content in liver0.40.40.70.80.7-0.3
Rb content in liver2.52.95.1-2.3-1.80.3
Se content in liver0.20.30.70.80.30.2
Sr content in liver3.63.14.62.02.2-0.9
Zn content in liver2.52.83.51.61.9-1.5
Bone: minimum diameter0.20.31.0-0.1-1.0-0.2
Time in familiar zone, hab. session 10.10.10.10.30.3-0.4
Time in novel zone, hab. session 11.51.52.2-1.5-1.30.6
Total zone transitions, hab. session 10.20.20.30.30.6-0.5
Total locomotion distance, hab. session 10.00.10.10.1-0.1-0.4
Locomotion velocity, hab. session 10.20.30.30.60.5-0.5
Time in familiar zone, hab. session 20.60.60.7-0.9-0.70.8
Time in novel zone, hab. session 20.90.91.40.70.8-1.2
Total zone transitions, hab. session 21.31.72.70.91.2-1.6
Total locomotion distance, hab. session 20.30.41.10.20.3-1.1
Locomotion velocity, hab. session 20.20.30.80.20.2-0.9
Novel to familiar place preference ratio1.82.03.11.71.5-0.9
Novelty place preference1.11.22.01.41.1-0.6
Time in novel zone, NPP test1.21.31.91.41.1-0.8
Total zone transitions, NPP test1.11.62.00.91.4-1.4
Total locomotion distance, NPP test0.30.41.1-0.10.4-1.1
Locomotion velocity, NPP test0.20.20.5-0.10.3-0.7
Intraocular pressure0.40.51.3-0.2-0.51.1
Delta distance traveled before/after self-admin0.80.91.7-1.3-0.90.1
Delta ambulatory time before/after self-admin1.01.22.4-1.6-1.10.3
Parametrial fat weight0.61.43.2-0.9-1.80.6
Pavlov. Cond. lever latency1.01.21.6-1.3-1.10.9
Pavlov. Cond. magazine entry latency1.21.63.31.81.2-0.3
Pavlov. Cond. change in total contacts0.91.02.11.50.80.4
Pavlov. Cond. index score0.81.02.11.41.0-0.0
Pavlov. Cond. latency score0.60.81.51.20.9-0.3
Pavlov. Cond. lever contacts0.50.60.80.90.7-0.7
Pavlov. Cond. magazine entry number1.11.42.7-1.6-1.2-0.4
Pavlov. Cond. intertrial magazine entries0.40.51.00.60.31.0
Pavlov. Cond. lever-magazine prob. diff.1.01.22.41.61.0-0.0
Pavlov. Cond. response bias1.11.42.81.71.2-0.0
Pavlov. Cond. lever latency0.50.71.4-1.2-0.80.2
Pavlov. Cond. magazine entry latency4.75.78.62.92.8-0.7
Pavlov. Cond. change in total contacts1.62.55.22.31.50.3
Pavlov. Cond. index score2.83.86.82.62.1-0.3
Pavlov. Cond. latency score2.73.66.52.62.0-0.3
Pavlov. Cond. lever contacts0.50.71.41.20.80.1
Pavlov. Cond. magazine entry number7.18.713.6-3.7-3.50.9
Pavlov. Cond. intertrial magazine entries1.31.92.3-1.3-1.51.3
Pavlov. Cond. lever-magazine prob. diff.3.24.27.62.72.2-0.2
Pavlov. Cond. response bias1.82.54.22.01.7-0.5
Time in closed arm before self-admin0.20.30.50.5-0.10.7
Time in closed arm after self-admin0.70.81.7-1.3-0.8-0.1
Time in open arm before self-admin2.52.85.6-2.4-1.2-1.1
Time in open arm after self-admin0.20.20.30.40.5-0.6
Bone: periosteal estimation0.10.20.60.7-0.1-0.4
Bone: periosteal perimeter0.10.20.60.8-0.00.1
Bone: post-yield work0.20.40.90.9-0.2-0.4
Progressive ratio test 1 active lever presses0.00.00.1-0.3-0.2-0.0
Progressive ratio test 1 breakpoint0.00.00.0-0.2-0.20.1
Progressive ratio test 1 inactive lever presses0.81.21.71.01.3-0.9
Progressive ratio test 2 active lever presses0.20.20.30.0-0.60.6
Progressive ratio test 2 breakpoint0.20.20.30.1-0.50.5
Progressive ratio test 2 inactive lever presses0.10.10.20.3-0.30.5
Incentive Sensitization - Responses0.71.02.21.50.7-0.5
Incentive Sensitization - Breakpoint0.60.81.91.40.6-0.4
Sum of active levers in priming session hrs 5-63.12.94.12.01.11.8
Progressive ratio0.10.10.20.4-0.1-0.3
Food seeking constrained by brief footshock0.10.10.2-0.4-0.2-0.3
Seeking ratio, punishment vs. effort0.30.50.9-0.9-0.1-0.7
Retroperitoneal fat weight2.510.516.3-3.8-4.01.1
Reaction time number correct0.10.20.30.30.5-0.5
Reaction time mean minus median0.82.02.91.71.01.4
Reaction time mean minus median AUC0.51.22.40.90.51.5
Reaction time num false alarms0.70.92.2-1.5-0.6-0.5
Reaction time num false alarms AUC0.40.61.2-1.1-0.1-0.8
Reaction time trials correct on left0.10.20.30.30.5-0.5
Reaction time trials on left0.10.20.30.30.6-0.5
Reaction time mean0.61.02.40.70.21.5
Reaction time mean AUC0.71.12.90.60.01.7
Median of all reaction times0.30.51.00.50.21.0
Reaction time omissions0.40.70.70.90.80.8
Reaction time false alarm rate0.40.61.3-1.2-0.5-0.5
Reaction time premature initiation rate3.95.48.41.52.3-2.9
Reaction time premature initiations3.15.67.31.62.6-2.7
Std. dev. reaction times0.81.43.90.70.12.0
Reaction time trials completed0.10.20.30.30.6-0.5
Reaction time trials AUC0.10.20.30.20.5-0.6
Run reversals in cocaine runway, females2.02.05.7-0.30.4-2.4
Run reversals in cocaine runway, males0.50.50.6-0.8-0.70.6
Latency to leave start box in cocaine runway0.20.30.4-0.5-0.6-0.3
Latency to leave start box in cocaine runway, F0.10.10.30.20.2-0.5
Latency to leave start box in cocaine runway, M1.61.42.4-1.3-1.60.4
Std. dev. time between licks in bursts0.50.61.2-1.1-0.5-0.7
Total sessions with >9 infusions0.40.40.7-0.9-0.7-0.1
Short access day 1 total inactive lever presses0.30.30.9-0.2-0.2-1.0
Short access day 10 total inactive lever presses0.30.60.9-0.9-0.80.5
Short access day 1 total infusions0.71.01.5-1.2-1.2-0.2
Short access day 10 total infusions0.40.51.3-0.2-0.2-1.2
Short access total infusions0.70.91.4-0.9-0.6-1.2
Short access day 1 locomotion0.10.10.1-0.2-0.3-0.2
Short access day 10 total locomotion0.20.40.80.60.2-0.9
Short access total locomotion0.10.10.40.1-0.0-0.6
One hour access (0.3 mA shock)0.20.30.7-0.4-0.80.1
Compulsive drug intake0.20.20.3-0.00.6-0.6
One hour access (shock baseline)1.01.52.4-0.8-1.61.2
Social response proportion0.00.00.1-0.00.3-0.2
Social responses0.10.10.1-0.10.20.4
Social time0.10.10.3-0.5-0.00.2
Soleus weight2.36.99.1-3.0-3.01.6
Bone: stiffness0.81.32.91.70.90.0
Tibialis anterior weight7.124.132.25.45.7-3.3
Time to tail flick, vehicle, before self-admin0.40.40.70.60.3-0.8
Time to tail flick, vehicle, after self-admin0.60.92.00.20.7-1.4
Time to tail flick, test, before self-admin1.61.64.9-0.00.0-2.2
Time to tail flick, test, after self-admin0.20.20.30.50.10.5
Delta time to tail flick, vehicle, before/after SA0.30.30.50.10.6-0.7
Delta time to tail flick, test, before/after SA1.81.84.90.70.32.2
Tibia length1.74.89.53.12.2-0.0
Ambulatory time before self-admin1.82.75.42.31.60.1
Ambulatory time after self-admin0.30.40.70.80.50.4
Bone: tissue strength0.50.50.7-0.8-0.80.3
Total heroin consumption4.14.87.42.62.7-0.6
Bone: trabecular number1.11.82.11.41.2-1.5
Bone: trabecular spacing0.71.01.6-1.3-0.80.8
Bone: trabecular thickness0.20.30.40.2-0.50.7
Bone: trabecular tissue density4.46.57.2-2.7-2.62.3
Water consumed over 24 hours0.20.30.50.40.7-0.4
Number of responses in last shaping day0.50.61.0-0.10.8-1.0