LOC134483968

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134483968 0.06 0.04 1.0e-05 0.03 0.04 0.03 0.03 1.1e-04 2.1e-05 4.6e-04 1.3e-04
2 Liver mRNA stability LOC134483968 0.03 0.02 5.1e-03 0.02 0.02 0 0.02 3.1e-03 4.3e-03 1.3e-01 5.6e-03
3 PL gene expression LOC134483968 0.06 0.04 6.2e-04 0.03 0.03 0.03 0.02 4.5e-04 1.8e-04 4.3e-04 1.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.70.90.9-0.7-0.9
Area under the delay curve0.30.51.4-0.2-0.1-1.2
BMI with tail3.110.717.42.6-2.8-4.2
BMI without tail0.63.07.10.5-1.3-2.7
Body weight3.414.917.43.3-4.0-4.2
Weight adjusted by age0.31.01.61.3-1.1-0.4
Bone surface2.14.26.42.5-2.1-1.3
Bone volume1.02.03.61.9-1.3-0.7
Breakpoint value in progressive ratio session1.22.13.41.9-1.70.0
Number of licking bursts0.00.00.1-0.1-0.2-0.2
Context. condit. distance diff. score0.70.80.8-0.90.9-0.9
Locomotion velocity, session 10.40.51.1-0.60.3-1.0
Locomotion distance, session 11.01.23.30.2-0.5-1.8
Locomotion velocity, session 22.32.73.11.6-1.8-1.5
Locomotion distance, session 20.30.51.3-0.0-0.4-1.2
Locomotion velocity, session 31.11.33.70.2-0.5-1.9
Locomotion distance, session 30.20.20.4-0.2-0.3-0.6
Stereotopy head waving bouts, day 30.70.92.1-0.40.6-1.5
Stereotopy head waving duration, day 30.60.71.6-0.50.6-1.3
Locomotion velocity, session 70.10.10.40.00.1-0.6
Locomotion distance, session 70.60.81.6-0.70.4-1.3
Stereotopy head waving bouts, day 70.20.30.70.8-0.4-0.1
Stereotopy head waving duration, day 71.41.72.51.6-1.4-0.8
Locomotion velocity, session 80.40.50.7-0.90.4-0.7
Locomotion distance, session 80.50.81.1-0.80.8-1.1
Degree of sensitization distance0.50.61.7-0.10.3-1.3
Degree of sensitization stereotypy1.11.22.51.6-1.0-0.0
Conditioned locomotion0.50.60.70.6-0.8-0.8
Cocaine response after cond. corrected0.91.32.0-1.41.2-0.8
Cocaine response after cond. not corrected0.40.60.9-1.00.9-0.3
Cocaine response before conditioning1.11.41.91.4-0.91.2
Saline control response2.23.04.81.4-2.2-1.5
Bone: connectivity density1.82.93.01.7-1.7-1.7
Bone: cortical apparent density0.10.20.30.5-0.40.3
Bone: cortical area0.91.52.51.6-1.4-0.3
Bone: cortical porosity0.20.20.6-0.00.20.8
Bone: cortical porosity0.00.00.10.0-0.00.4
Bone: cortical thickness2.03.46.31.8-2.5-0.8
Bone: cortical thickness0.10.20.40.1-0.6-0.4
Bone: cortical tissue density0.20.30.40.7-0.60.3
Condit. Reinf. active minus inactive responses0.91.01.41.2-1.1-0.5
Condit. Reinf. active-inactive response ratio0.20.20.40.6-0.6-0.2
Condit. Reinf. active responses1.01.22.31.5-1.1-0.4
Condit. Reinf. inactive responses0.10.20.50.7-0.10.1
Incentive salience index mean1.21.51.81.3-1.3-1.0
Condit. Reinf. lever presses0.91.41.61.3-1.2-1.0
Condit. Reinf. active minus inactive responses0.40.61.50.30.21.2
Condit. Reinf. active-inactive response ratio0.40.61.10.40.71.1
Condit. Reinf. active responses0.20.20.30.6-0.40.4
Condit. Reinf. inactive responses0.10.20.3-0.1-0.6-0.4
Condit. Reinf. lever presses1.01.42.41.5-1.4-0.2
Condit. Reinf. lever reinforcers received0.30.40.70.8-0.70.5
Conditioned reinforcement - actives0.21.02.30.60.61.5
Conditioned reinforcement - inactives0.10.30.70.80.30.5
Conditioned locomotion1.21.73.7-1.21.90.3
Patch foraging indifference point 0 sec0.30.70.80.8-0.9-0.9
Patch foraging indifference point AUC1.02.34.42.1-1.40.7
Delay disc. indifference point, 0s delay0.91.01.5-1.00.7-1.2
Delay disc. indifference point, 16s delay0.10.20.30.5-0.3-0.4
Delay disc. indifference point, 2s delay0.10.20.3-0.30.5-0.3
Delay disc. indifference point, 24s delay0.20.30.9-0.2-0.3-0.9
Delay disc. indifference point, 4s delay1.21.33.6-0.2-0.4-1.9
Delay disc. indifference point, 8s delay0.40.71.3-1.20.7-0.6
Indifference point function ln k2.05.910.8-3.32.5-0.8
Indifference point function log k2.05.910.8-3.32.5-0.8
Patch foraging total patch changes 0 sec0.20.60.90.5-0.9-0.9
Patch foraging total patch changes 12 sec4.76.39.13.0-2.9-1.0
Patch foraging total patch changes 18 sec0.30.81.41.2-0.90.2
Patch foraging total patch changes 24 sec2.17.19.22.8-3.0-2.1
Patch foraging total patch changes 6 sec0.91.51.81.1-1.4-1.2
Patch foraging time to switch 0 sec0.20.71.41.2-0.6-0.5
Patch foraging water rate 0 sec0.20.81.4-1.20.80.6
Patch foraging water rate 12 sec0.83.37.2-2.71.70.0
Patch foraging water rate 18 sec0.81.83.5-1.90.7-1.2
Patch foraging water rate 24 sec1.41.93.5-1.91.50.3
Patch foraging water rate 6 sec1.82.65.7-2.41.4-0.1
Seeking ratio, delayed vs. immediate footshock0.10.10.20.1-0.2-0.5
Distance traveled before self-admin1.32.75.12.3-1.7-0.4
Distance traveled after self-admin0.30.50.91.0-0.80.4
Extensor digitorum longus weight5.522.129.24.6-5.4-4.0
Bone: elastic displacement0.50.61.2-1.10.60.3
Bone: elastic work0.71.01.60.3-1.1-1.3
Bone: endosteal estimation0.30.81.8-0.71.4-0.4
Bone: endosteal perimeter0.51.12.9-0.61.70.5
Epididymis fat weight0.10.51.1-0.51.10.5
Delta time in closed arm before/after self-admin2.32.25.9-0.2-0.8-2.4
Delta time in open arm before/after self-admin2.12.45.12.3-1.40.3
Diff in mean of infusions in LGA sessions1.01.82.61.4-1.6-0.9
Delay discount exponential model param0.30.51.40.10.11.2
Extinction: sum of active levers before priming2.53.74.92.1-2.2-1.3
Active lever presses in extinction session 62.93.05.62.4-1.80.1
Bone: final force1.62.63.41.9-1.8-1.2
Bone: final moment1.72.73.51.9-1.8-1.2
Food consumed during 24 hour testing period0.10.30.90.0-0.00.9
Glucose1.52.43.7-1.91.90.0
Heart weight1.11.83.7-1.20.4-1.9
Delay discount hyperbolic model param0.30.41.10.20.01.1
Intermittent access intake day 1-15 change0.42.45.3-0.51.32.3
Intermittent access intake escalation0.63.16.8-0.61.52.6
Intermittent access intake escalation 20.71.23.30.20.71.8
Intermitt. access day 1 inactive lever presses0.11.52.5-0.71.31.6
Intermitt. access day 15 inactive lever presses0.21.32.91.7-0.9-0.3
Intermitt. access escalation Index0.30.91.7-1.31.00.2
Intermittent access day 1 total infusions0.31.02.3-0.20.8-1.5
Intermittent access day 15 total infusions1.02.44.6-0.92.11.3
Intermittent access terminal intake (last 3 days)0.30.41.20.21.10.2
Intermittent access total infusions0.40.51.4-0.21.2-0.3
Intermittent access day 1 locomotion0.40.82.10.00.4-1.4
Intermittent access day 15 total locomotion0.10.30.40.70.6-0.0
Intermittent access total locomotion0.40.50.60.80.6-0.7
Intermittent access standard deviation0.20.91.4-0.41.11.2
Left kidney weight0.00.10.2-0.10.4-0.4
Right kidney weight0.00.00.00.00.2-0.2
Cocaine induced anxiety0.10.30.50.6-0.10.7
Post-drug Anxiety0.30.40.70.8-0.60.1
Baseline Anxiety0.40.61.50.0-0.6-1.2
Tail length0.10.71.80.4-1.3-0.6
Length with tail1.04.57.71.9-2.8-1.5
Length without tail1.47.511.02.5-3.3-2.3
Times rat made contact with spout0.10.10.2-0.2-0.4-0.3
Lifetime Intake0.50.71.3-0.51.1-0.7
Liver weight, left0.91.52.1-1.51.30.9
Liver weight, right1.22.24.1-2.01.5-0.2
Locomotor activity1.21.84.3-2.11.1-0.3
Locomotor testing distance0.92.35.0-2.21.2-0.6
Locomotor testing rearing0.51.84.0-2.01.2-0.0
Locomotion in novel chamber1.11.52.8-1.01.70.9
Locomotion in novel chamber post-restriction0.82.33.4-1.21.81.4
Fecal boli incidents, locomotor time 10.30.82.10.40.41.4
Change in fecal boli incidents, locomotor task1.51.63.0-1.71.2-0.6
Time >=10cm from walls, locomotor time 11.11.42.0-0.31.41.4
Bouts of movement, locomotor time 10.91.12.80.7-0.31.7
Total resting periods, locomotor time 10.91.12.50.8-0.31.6
Rest time, locomotor task time 11.21.92.6-1.11.31.6
Distance moved, locomotor task time 10.20.50.90.5-0.6-0.9
Vertical activity count, locomotor time 10.10.40.7-0.80.80.0
Time >=10cm from walls, locomotor time 20.30.92.40.60.11.5
Bouts of movement, locomotor time 20.31.11.71.2-1.3-0.3
Total resting periods, locomotor time 20.10.50.80.9-0.9-0.1
Rest time, locomotor task time 21.83.04.1-1.92.01.1
Distance moved, locomotor task time 20.30.50.70.8-0.80.2
Vertical activity count, locomotor time 20.10.10.3-0.60.10.2
Light reinforcement 10.00.20.5-0.20.10.7
Light reinforcement 20.30.71.40.80.11.2
Bone: marrow area0.41.12.3-0.91.5-0.3
Bone: maximum diameter0.30.51.41.2-0.5-0.0
Bone: maximum force2.54.96.72.6-2.3-1.7
Bone: maximum moment2.64.96.52.5-2.3-1.7
Mean time between licks in bursts0.21.12.6-0.5-0.7-1.6
Mean num. licks in bursts0.00.10.1-0.40.30.3
Cd content in liver0.70.71.3-0.41.10.9
Co content in liver1.21.42.5-1.61.10.7
Cu content in liver0.00.00.1-0.30.10.2
Fe content in liver0.10.10.1-0.20.3-0.3
K content in liver0.60.60.80.5-0.9-0.9
Mg content in liver0.40.51.4-0.3-0.1-1.2
Mn content in liver3.03.44.72.2-2.2-0.8
Na content in liver0.40.50.70.8-0.8-0.3
Rb content in liver2.32.75.1-2.31.70.3
Se content in liver0.20.30.70.8-0.40.2
Sr content in liver3.43.04.22.0-2.0-0.9
Zn content in liver2.22.52.81.6-1.7-1.5
Bone: minimum diameter0.10.20.5-0.10.7-0.2
Time in familiar zone, hab. session 10.10.10.10.3-0.2-0.4
Time in novel zone, hab. session 11.21.42.2-1.51.20.6
Total zone transitions, hab. session 10.10.20.20.3-0.5-0.5
Total locomotion distance, hab. session 10.10.10.10.10.4-0.4
Locomotion velocity, hab. session 10.20.20.30.6-0.2-0.5
Time in familiar zone, hab. session 20.40.50.7-0.90.40.8
Time in novel zone, hab. session 20.70.81.40.7-0.6-1.2
Total zone transitions, hab. session 21.31.72.70.9-1.3-1.6
Total locomotion distance, hab. session 20.30.41.10.2-0.3-1.1
Locomotion velocity, hab. session 20.20.30.80.2-0.1-0.9
Novel to familiar place preference ratio1.72.23.11.7-1.6-0.9
Novelty place preference1.11.42.01.4-1.3-0.6
Time in novel zone, NPP test1.21.41.91.4-1.3-0.8
Total zone transitions, NPP test0.91.31.90.9-1.1-1.4
Total locomotion distance, NPP test0.30.41.1-0.1-0.0-1.1
Locomotion velocity, NPP test0.10.20.5-0.10.1-0.7
Intraocular pressure0.30.51.3-0.20.31.1
Delta distance traveled before/after self-admin0.70.71.7-1.30.70.1
Delta ambulatory time before/after self-admin0.71.12.4-1.60.90.3
Parametrial fat weight0.61.32.9-0.91.70.6
Pavlov. Cond. lever latency1.01.21.6-1.31.10.9
Pavlov. Cond. magazine entry latency1.21.63.31.8-1.2-0.3
Pavlov. Cond. change in total contacts0.80.92.11.5-0.60.4
Pavlov. Cond. index score0.81.02.11.4-1.0-0.0
Pavlov. Cond. latency score0.60.81.51.2-0.9-0.3
Pavlov. Cond. lever contacts0.50.60.80.9-0.8-0.7
Pavlov. Cond. magazine entry number1.01.32.7-1.61.0-0.4
Pavlov. Cond. intertrial magazine entries0.40.51.00.6-0.21.0
Pavlov. Cond. lever-magazine prob. diff.0.91.22.41.6-1.0-0.0
Pavlov. Cond. response bias1.11.32.81.7-1.1-0.0
Pavlov. Cond. lever latency0.60.81.4-1.21.00.2
Pavlov. Cond. magazine entry latency3.85.48.62.9-2.7-0.7
Pavlov. Cond. change in total contacts1.12.75.22.3-1.60.3
Pavlov. Cond. index score2.43.86.82.6-2.1-0.3
Pavlov. Cond. latency score2.23.56.52.6-2.0-0.3
Pavlov. Cond. lever contacts0.50.81.41.2-0.90.1
Pavlov. Cond. magazine entry number6.58.413.6-3.73.30.9
Pavlov. Cond. intertrial magazine entries0.92.02.6-1.31.61.3
Pavlov. Cond. lever-magazine prob. diff.2.84.27.62.7-2.3-0.2
Pavlov. Cond. response bias1.92.74.22.0-1.9-0.5
Time in closed arm before self-admin0.20.30.50.50.00.7
Time in closed arm after self-admin0.70.81.7-1.30.9-0.1
Time in open arm before self-admin2.32.75.6-2.41.2-1.1
Time in open arm after self-admin0.20.30.30.4-0.6-0.6
Bone: periosteal estimation0.10.20.60.7-0.1-0.4
Bone: periosteal perimeter0.10.20.60.8-0.20.1
Bone: post-yield work0.20.40.90.90.2-0.4
Progressive ratio test 1 active lever presses0.20.30.7-0.30.9-0.0
Progressive ratio test 1 breakpoint0.10.30.7-0.20.80.1
Progressive ratio test 1 inactive lever presses0.30.91.01.0-0.8-0.9
Progressive ratio test 2 active lever presses0.40.51.20.01.10.6
Progressive ratio test 2 breakpoint0.40.51.10.11.00.5
Progressive ratio test 2 inactive lever presses0.10.30.70.30.80.5
Incentive Sensitization - Responses0.41.02.21.5-0.8-0.5
Incentive Sensitization - Breakpoint0.40.81.91.4-0.6-0.4
Sum of active levers in priming session hrs 5-63.02.84.12.0-1.01.8
Progressive ratio0.00.10.20.4-0.1-0.3
Food seeking constrained by brief footshock0.10.10.2-0.40.2-0.3
Seeking ratio, punishment vs. effort0.20.50.9-0.90.3-0.7
Retroperitoneal fat weight2.310.416.0-3.84.01.1
Reaction time number correct0.10.51.10.3-1.1-0.5
Reaction time mean minus median0.31.92.91.7-0.81.4
Reaction time mean minus median AUC0.21.12.40.9-0.41.5
Reaction time num false alarms0.61.02.2-1.50.8-0.5
Reaction time num false alarms AUC0.30.61.2-1.10.3-0.8
Reaction time trials correct on left0.10.51.10.3-1.1-0.5
Reaction time trials on left0.10.51.20.3-1.1-0.5
Reaction time mean0.41.02.40.70.31.5
Reaction time mean AUC0.51.12.90.60.31.7
Median of all reaction times0.30.51.00.50.31.0
Reaction time omissions0.30.60.70.9-0.60.8
Reaction time false alarm rate0.60.81.3-1.20.9-0.5
Reaction time premature initiation rate3.85.88.41.5-2.6-2.9
Reaction time premature initiations2.16.59.51.6-3.1-2.7
Std. dev. reaction times0.41.53.90.70.32.0
Reaction time trials completed0.10.51.20.3-1.1-0.5
Reaction time trials AUC0.10.40.90.2-1.0-0.6
Run reversals in cocaine runway, females1.82.05.7-0.3-0.5-2.4
Run reversals in cocaine runway, males0.50.50.6-0.80.70.6
Latency to leave start box in cocaine runway0.20.30.4-0.50.6-0.3
Latency to leave start box in cocaine runway, F0.10.10.30.2-0.2-0.5
Latency to leave start box in cocaine runway, M1.51.42.3-1.31.50.4
Std. dev. time between licks in bursts0.30.61.2-1.10.2-0.7
Total sessions with >9 infusions0.50.61.2-0.91.1-0.1
Short access day 1 total inactive lever presses0.20.40.9-0.20.4-1.0
Short access day 10 total inactive lever presses0.10.70.9-0.90.90.5
Short access day 1 total infusions0.61.21.9-1.21.4-0.2
Short access day 10 total infusions0.40.61.3-0.20.6-1.2
Short access total infusions0.81.11.4-0.91.0-1.2
Short access day 1 locomotion0.10.20.4-0.20.6-0.2
Short access day 10 total locomotion0.10.40.80.6-0.0-0.9
Short access total locomotion0.10.20.40.10.5-0.6
One hour access (0.3 mA shock)0.40.51.4-0.41.20.1
Compulsive drug intake0.30.51.0-0.0-1.0-0.6
One hour access (shock baseline)0.82.14.4-0.82.11.2
Social response proportion0.10.10.2-0.0-0.5-0.2
Social responses0.10.10.2-0.1-0.40.4
Social time0.10.10.3-0.5-0.00.2
Soleus weight2.47.29.9-3.03.11.6
Bone: stiffness0.81.52.91.7-1.20.0
Tibialis anterior weight7.224.934.55.4-5.9-3.3
Time to tail flick, vehicle, before self-admin0.30.40.70.6-0.3-0.8
Time to tail flick, vehicle, after self-admin0.40.72.00.2-0.4-1.4
Time to tail flick, test, before self-admin1.51.74.9-0.0-0.4-2.2
Time to tail flick, test, after self-admin0.20.20.30.5-0.20.5
Delta time to tail flick, vehicle, before/after SA0.20.20.50.1-0.4-0.7
Delta time to tail flick, test, before/after SA1.51.84.90.7-0.12.2
Tibia length1.74.79.53.1-2.2-0.0
Ambulatory time before self-admin0.92.65.42.3-1.60.1
Ambulatory time after self-admin0.20.40.70.8-0.40.4
Bone: tissue strength0.30.30.7-0.80.30.3
Total heroin consumption4.14.87.22.6-2.7-0.6
Bone: trabecular number1.02.02.11.4-1.3-1.5
Bone: trabecular spacing0.71.01.6-1.30.80.8
Bone: trabecular thickness0.20.20.40.20.40.7
Bone: trabecular tissue density4.17.29.2-2.73.02.3
Water consumed over 24 hours0.20.51.10.4-1.1-0.4
Number of responses in last shaping day0.30.41.0-0.1-0.3-1.0