LOC134483641

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC134483641 0.16 0.05 0.0e+00 0.15 0.22 0.22 0.21 1.5e-22 2.8e-32 5.0e-32 1.3e-30
2 Brain gene expression LOC134483641 0.06 0.04 1.3e-03 0.02 0.02 0.02 0.02 2.6e-03 7.8e-03 1.1e-02 5.8e-03
3 PL gene expression LOC134483641 0.07 0.03 2.3e-07 0.1 0.07 0.09 0.1 9.0e-11 2.7e-08 8.0e-10 1.4e-10
4 NAcc intron excision ratio chr19_54131924_54153610 0.03 0.02 9.9e-04 0.03 0.02 0.02 0.02 8.8e-05 7.2e-04 6.7e-04 1.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.3-0.0-0.6-0.50.4
Area under the delay curve0.20.20.50.3-0.3-0.70.5
BMI with tail0.93.23.81.8-1.5-1.9-1.9
BMI without tail0.31.82.81.4-1.0-1.2-1.7
Body weight2.711.814.03.7-3.4-3.6-2.9
Weight adjusted by age0.20.71.30.5-1.1-1.1-0.3
Bone surface2.03.85.82.4-2.0-2.1-1.1
Bone volume1.12.13.21.8-1.5-1.5-0.8
Breakpoint value in progressive ratio session0.30.50.8-0.60.90.50.6
Number of licking bursts0.00.10.3-0.10.00.60.3
Context. condit. distance diff. score0.10.20.40.60.30.4-0.2
Locomotion velocity, session 10.50.61.40.4-0.6-1.20.6
Locomotion distance, session 10.20.30.7-0.3-0.5-0.20.8
Locomotion velocity, session 20.20.20.90.00.00.40.9
Locomotion distance, session 21.21.73.10.9-1.8-1.6-0.5
Locomotion velocity, session 31.11.33.5-1.3-0.2-0.21.9
Locomotion distance, session 30.20.20.5-0.2-0.7-0.50.3
Stereotopy head waving bouts, day 34.65.58.4-2.32.31.92.9
Stereotopy head waving duration, day 32.22.76.1-1.31.31.12.5
Locomotion velocity, session 70.40.40.9-0.8-0.4-0.00.9
Locomotion distance, session 71.01.22.20.9-1.5-1.2-0.7
Stereotopy head waving bouts, day 76.77.89.5-2.82.72.63.1
Stereotopy head waving duration, day 77.59.311.2-3.12.92.83.4
Locomotion velocity, session 80.81.01.31.1-1.0-1.1-0.6
Locomotion distance, session 80.50.71.21.1-0.9-0.9-0.5
Degree of sensitization distance0.70.71.11.0-0.5-0.7-1.1
Degree of sensitization stereotypy5.05.57.2-2.52.02.12.7
Conditioned locomotion0.30.30.50.7-0.5-0.5-0.4
Cocaine response after cond. corrected0.40.61.20.0-1.1-1.0-0.3
Cocaine response after cond. not corrected0.30.40.70.1-0.8-0.8-0.4
Cocaine response before conditioning0.10.10.3-0.10.50.60.1
Saline control response0.60.92.11.5-0.9-0.80.0
Bone: connectivity density0.30.51.00.7-1.0-0.8-0.1
Bone: cortical apparent density0.50.71.2-1.11.00.90.2
Bone: cortical area3.25.27.42.7-2.5-2.1-1.6
Bone: cortical porosity0.20.20.5-0.20.70.20.6
Bone: cortical porosity0.10.20.50.00.3-0.20.7
Bone: cortical thickness0.61.01.61.1-1.2-0.9-0.7
Bone: cortical thickness0.40.50.70.8-0.8-0.8-0.4
Bone: cortical tissue density0.40.71.1-1.10.90.80.2
Condit. Reinf. active minus inactive responses0.10.10.3-0.20.30.2-0.5
Condit. Reinf. active-inactive response ratio0.50.51.2-0.51.10.6-0.6
Condit. Reinf. active responses0.20.20.60.3-0.3-0.4-0.8
Condit. Reinf. inactive responses0.70.91.60.9-1.2-1.0-0.7
Incentive salience index mean0.40.51.00.8-0.5-0.3-1.0
Condit. Reinf. lever presses0.91.42.51.6-1.2-0.5-1.2
Condit. Reinf. active minus inactive responses2.13.36.51.3-2.6-2.20.5
Condit. Reinf. active-inactive response ratio0.91.43.00.5-1.7-1.40.8
Condit. Reinf. active responses1.72.44.11.5-2.0-1.80.4
Condit. Reinf. inactive responses0.30.51.31.1-0.3-0.5-0.4
Condit. Reinf. lever presses0.40.51.11.0-0.9-0.50.0
Condit. Reinf. lever reinforcers received1.42.03.31.4-1.8-1.70.3
Conditioned reinforcement - actives0.20.61.8-0.3-0.8-1.3-0.0
Conditioned reinforcement - inactives0.10.30.40.2-0.7-0.6-0.4
Conditioned locomotion1.42.13.80.7-1.9-2.0-0.5
Patch foraging indifference point 0 sec0.10.30.5-0.20.70.70.3
Patch foraging indifference point AUC0.40.93.20.0-0.60.11.8
Delay disc. indifference point, 0s delay1.82.02.5-1.21.61.31.5
Delay disc. indifference point, 16s delay0.10.10.4-0.30.2-0.10.6
Delay disc. indifference point, 2s delay1.01.12.01.3-0.8-1.40.1
Delay disc. indifference point, 24s delay0.61.01.41.1-0.6-0.8-1.2
Delay disc. indifference point, 4s delay0.70.72.7-0.40.2-0.11.7
Delay disc. indifference point, 8s delay0.00.00.00.0-0.2-0.10.2
Indifference point function ln k0.41.24.20.60.50.0-2.0
Indifference point function log k0.41.24.20.60.50.0-2.0
Patch foraging total patch changes 0 sec0.10.40.8-0.10.90.80.2
Patch foraging total patch changes 12 sec0.20.30.40.5-0.7-0.10.6
Patch foraging total patch changes 18 sec0.20.50.9-0.90.40.50.9
Patch foraging total patch changes 24 sec0.20.82.1-0.31.11.50.1
Patch foraging total patch changes 6 sec0.20.30.80.9-0.70.0-0.2
Patch foraging time to switch 0 sec0.00.20.4-0.4-0.1-0.5-0.6
Patch foraging water rate 0 sec0.00.10.30.60.10.10.2
Patch foraging water rate 12 sec0.31.22.5-0.21.61.60.1
Patch foraging water rate 18 sec0.30.61.21.10.20.4-1.1
Patch foraging water rate 24 sec1.11.62.7-1.11.31.60.9
Patch foraging water rate 6 sec0.20.30.50.40.60.70.6
Seeking ratio, delayed vs. immediate footshock1.21.74.00.2-1.6-2.0-0.2
Distance traveled before self-admin0.10.20.50.7-0.3-0.6-0.0
Distance traveled after self-admin0.00.00.10.10.20.20.3
Extensor digitorum longus weight0.20.61.81.3-0.10.2-0.9
Bone: elastic displacement0.50.71.1-1.00.70.80.6
Bone: elastic work0.20.30.50.6-0.7-0.3-0.5
Bone: endosteal estimation3.07.310.83.3-2.5-2.6-2.3
Bone: endosteal perimeter3.17.711.23.3-2.8-2.6-2.2
Epididymis fat weight0.84.05.42.3-1.8-1.8-2.0
Delta time in closed arm before/after self-admin0.30.30.4-0.2-0.7-0.50.5
Delta time in open arm before/after self-admin0.10.10.30.20.50.2-0.1
Diff in mean of infusions in LGA sessions0.20.40.70.8-0.4-0.6-0.6
Delay discount exponential model param0.30.51.0-0.70.61.0-0.2
Extinction: sum of active levers before priming0.30.41.3-0.50.20.11.2
Active lever presses in extinction session 60.50.51.1-0.90.5-0.11.0
Bone: final force2.03.35.52.3-1.6-1.2-1.9
Bone: final moment2.13.45.22.3-1.7-1.3-1.9
Food consumed during 24 hour testing period0.30.50.90.9-0.9-0.6-0.3
Glucose0.50.81.70.8-0.3-0.8-1.3
Heart weight1.21.92.81.7-0.9-1.5-1.4
Delay discount hyperbolic model param0.30.40.9-0.60.61.0-0.4
Intermittent access intake day 1-15 change0.63.24.3-2.02.12.00.8
Intermittent access intake escalation0.31.82.5-1.61.61.40.6
Intermittent access intake escalation 20.50.81.2-1.01.11.00.2
Intermitt. access day 1 inactive lever presses0.10.71.7-0.2-1.3-1.0-0.2
Intermitt. access day 15 inactive lever presses0.31.42.30.8-1.5-1.5-0.7
Intermitt. access escalation Index0.00.20.30.3-0.60.10.4
Intermittent access day 1 total infusions0.51.63.0-1.60.0-0.81.7
Intermittent access day 15 total infusions0.40.92.7-1.60.6-0.20.7
Intermittent access terminal intake (last 3 days)1.01.74.5-2.11.30.50.7
Intermittent access total infusions0.70.92.6-1.60.5-0.40.6
Intermittent access day 1 locomotion0.40.71.2-0.9-0.2-0.91.1
Intermittent access day 15 total locomotion0.20.82.2-1.50.70.10.8
Intermittent access total locomotion0.70.92.2-1.50.6-0.30.9
Intermittent access standard deviation0.10.41.1-0.3-0.5-1.1-0.1
Left kidney weight2.621.233.35.8-3.7-3.8-4.9
Right kidney weight2.617.928.75.4-3.5-3.3-4.4
Cocaine induced anxiety0.00.10.20.4-0.4-0.1-0.2
Post-drug Anxiety0.00.00.0-0.10.20.20.2
Baseline Anxiety0.40.71.2-0.81.10.80.6
Tail length0.31.62.91.7-1.3-1.0-1.0
Length with tail1.35.97.92.8-2.7-2.4-1.5
Length without tail0.42.33.21.8-1.6-1.7-0.8
Times rat made contact with spout0.30.40.8-0.4-0.7-0.90.1
Lifetime Intake0.60.71.8-1.30.2-0.90.5
Liver weight, left0.30.51.1-0.60.50.51.0
Liver weight, right1.83.15.42.3-1.4-1.2-1.9
Locomotor activity2.13.24.22.0-2.0-1.8-1.2
Locomotor testing distance0.00.00.1-0.1-0.0-0.20.0
Locomotor testing rearing0.00.00.00.10.2-0.00.2
Locomotion in novel chamber0.10.20.5-0.2-0.5-0.10.7
Locomotion in novel chamber post-restriction0.31.01.51.2-0.8-1.2-0.8
Fecal boli incidents, locomotor time 10.20.60.80.9-0.9-0.8-0.5
Change in fecal boli incidents, locomotor task0.30.40.80.40.60.9-0.4
Time >=10cm from walls, locomotor time 11.11.32.31.0-1.1-1.5-0.9
Bouts of movement, locomotor time 12.83.65.5-1.62.12.31.4
Total resting periods, locomotor time 13.23.65.4-1.72.12.31.4
Rest time, locomotor task time 11.62.64.3-1.71.32.11.3
Distance moved, locomotor task time 11.23.54.81.7-1.9-2.2-1.7
Vertical activity count, locomotor time 10.21.52.21.1-1.4-1.5-0.6
Time >=10cm from walls, locomotor time 20.00.10.3-0.50.10.00.2
Bouts of movement, locomotor time 20.72.45.6-0.72.41.70.8
Total resting periods, locomotor time 20.41.84.6-0.52.11.40.5
Rest time, locomotor task time 20.91.63.4-1.01.81.4-0.1
Distance moved, locomotor task time 20.91.11.90.9-1.4-1.3-0.4
Vertical activity count, locomotor time 20.30.61.30.4-1.1-0.01.1
Light reinforcement 10.10.60.80.9-0.8-0.70.6
Light reinforcement 20.10.20.60.30.1-0.40.7
Bone: marrow area2.86.910.23.2-2.4-2.6-2.1
Bone: maximum diameter3.67.210.73.3-2.9-2.5-1.9
Bone: maximum force3.16.09.63.1-2.4-2.2-2.0
Bone: maximum moment3.36.39.23.0-2.5-2.4-2.1
Mean time between licks in bursts0.21.01.7-1.00.91.30.6
Mean num. licks in bursts0.20.41.3-0.2-0.6-1.1-0.2
Cd content in liver0.10.10.2-0.5-0.30.3-0.3
Co content in liver3.23.88.2-2.91.91.41.2
Cu content in liver0.10.20.5-0.20.70.3-0.2
Fe content in liver0.81.02.4-1.10.40.51.5
K content in liver0.80.71.01.0-1.0-1.0-0.1
Mg content in liver0.80.93.3-0.5-0.10.01.8
Mn content in liver0.70.81.70.9-1.3-0.80.0
Na content in liver0.10.10.10.30.0-0.3-0.2
Rb content in liver0.91.13.1-1.00.30.21.7
Se content in liver0.70.81.4-1.10.61.20.7
Sr content in liver0.90.81.41.0-0.5-0.7-1.2
Zn content in liver0.60.71.3-1.10.80.60.7
Bone: minimum diameter3.87.310.43.2-2.7-2.7-2.0
Time in familiar zone, hab. session 11.11.22.3-1.00.71.11.5
Time in novel zone, hab. session 11.71.92.91.1-1.2-1.5-1.7
Total zone transitions, hab. session 12.83.95.22.3-2.1-2.2-1.0
Total locomotion distance, hab. session 11.72.53.61.7-1.7-1.9-0.7
Locomotion velocity, hab. session 12.73.84.82.2-2.1-2.1-1.4
Time in familiar zone, hab. session 20.20.20.4-0.50.00.40.6
Time in novel zone, hab. session 20.40.41.10.4-0.2-0.5-1.0
Total zone transitions, hab. session 20.81.01.61.0-1.3-1.20.2
Total locomotion distance, hab. session 20.20.30.50.2-0.7-0.30.7
Locomotion velocity, hab. session 20.20.30.50.3-0.7-0.20.7
Novel to familiar place preference ratio0.60.82.00.5-0.8-1.4-0.3
Novelty place preference0.81.02.30.7-1.0-1.5-0.5
Time in novel zone, NPP test1.01.22.90.7-1.1-1.7-0.6
Total zone transitions, NPP test1.01.52.41.4-1.5-1.3-0.4
Total locomotion distance, NPP test1.42.02.91.5-1.7-1.7-0.5
Locomotion velocity, NPP test0.60.91.61.0-1.3-1.0-0.0
Intraocular pressure0.10.10.30.0-0.2-0.60.4
Delta distance traveled before/after self-admin0.30.40.90.7-0.10.3-0.9
Delta ambulatory time before/after self-admin0.30.51.2-0.20.71.1-0.4
Parametrial fat weight1.33.03.71.7-1.9-1.8-1.3
Pavlov. Cond. lever latency1.11.43.2-1.81.01.00.7
Pavlov. Cond. magazine entry latency0.10.20.30.3-0.5-0.4-0.4
Pavlov. Cond. change in total contacts0.20.20.91.0-0.10.2-0.1
Pavlov. Cond. index score1.01.32.91.7-1.0-0.8-0.9
Pavlov. Cond. latency score0.81.02.21.5-0.9-0.8-0.7
Pavlov. Cond. lever contacts1.11.33.41.8-0.9-0.8-0.8
Pavlov. Cond. magazine entry number0.20.30.4-0.60.50.50.4
Pavlov. Cond. intertrial magazine entries0.30.30.50.5-0.7-0.4-0.6
Pavlov. Cond. lever-magazine prob. diff.1.21.53.51.9-1.1-0.8-0.9
Pavlov. Cond. response bias0.81.01.91.4-0.9-0.8-0.9
Pavlov. Cond. lever latency0.10.20.40.0-0.3-0.6-0.3
Pavlov. Cond. magazine entry latency0.20.30.70.50.20.5-0.8
Pavlov. Cond. change in total contacts0.20.51.2-0.30.81.10.5
Pavlov. Cond. index score0.30.51.3-0.20.81.10.3
Pavlov. Cond. latency score0.40.61.6-0.20.71.30.4
Pavlov. Cond. lever contacts0.10.10.30.10.30.60.2
Pavlov. Cond. magazine entry number0.30.40.90.1-0.7-0.90.4
Pavlov. Cond. intertrial magazine entries0.51.12.00.5-1.4-1.40.5
Pavlov. Cond. lever-magazine prob. diff.0.60.92.0-0.41.01.40.4
Pavlov. Cond. response bias0.10.10.40.60.10.2-0.3
Time in closed arm before self-admin0.00.10.20.30.10.10.5
Time in closed arm after self-admin0.10.20.6-0.3-0.10.10.7
Time in open arm before self-admin0.91.01.8-0.91.11.30.7
Time in open arm after self-admin0.60.61.1-0.81.10.80.2
Bone: periosteal estimation4.711.116.14.0-3.3-3.2-2.7
Bone: periosteal perimeter5.510.815.84.0-3.6-3.0-2.4
Bone: post-yield work0.50.81.71.3-0.5-0.9-0.7
Progressive ratio test 1 active lever presses0.20.40.8-0.90.8-0.20.2
Progressive ratio test 1 breakpoint0.30.51.0-1.00.9-0.10.2
Progressive ratio test 1 inactive lever presses0.20.62.00.2-0.6-1.4-0.1
Progressive ratio test 2 active lever presses1.11.54.0-2.01.20.30.7
Progressive ratio test 2 breakpoint0.81.13.0-1.71.00.10.5
Progressive ratio test 2 inactive lever presses0.62.05.1-2.31.10.90.9
Incentive Sensitization - Responses1.23.46.1-2.51.71.90.9
Incentive Sensitization - Breakpoint1.43.15.9-2.41.61.70.9
Sum of active levers in priming session hrs 5-60.10.10.20.4-0.3-0.40.3
Progressive ratio2.05.87.92.8-2.0-2.0-2.7
Food seeking constrained by brief footshock3.84.85.92.4-1.6-2.2-2.4
Seeking ratio, punishment vs. effort0.40.81.3-1.01.20.60.7
Retroperitoneal fat weight1.14.76.62.1-2.6-2.5-1.2
Reaction time number correct0.20.91.8-1.30.80.41.0
Reaction time mean minus median0.10.71.00.9-0.7-0.8-1.0
Reaction time mean minus median AUC0.00.30.50.3-0.5-0.7-0.6
Reaction time num false alarms0.00.00.1-0.20.20.1-0.1
Reaction time num false alarms AUC0.20.50.8-0.80.90.50.1
Reaction time trials correct on left0.20.91.8-1.30.80.41.0
Reaction time trials on left0.31.02.0-1.40.80.41.0
Reaction time mean0.30.71.21.0-0.8-1.1-0.5
Reaction time mean AUC0.20.40.80.7-0.5-0.9-0.4
Median of all reaction times0.30.40.90.7-0.5-1.0-0.1
Reaction time omissions0.30.51.10.1-0.9-1.0-0.1
Reaction time false alarm rate0.10.20.3-0.40.60.5-0.0
Reaction time premature initiation rate2.53.97.82.8-1.7-1.1-1.9
Reaction time premature initiations0.72.13.92.0-1.3-0.8-1.4
Std. dev. reaction times0.20.60.90.8-0.8-0.9-0.6
Reaction time trials completed0.31.02.0-1.40.80.41.0
Reaction time trials AUC0.41.42.6-1.61.00.71.2
Run reversals in cocaine runway, females0.60.71.0-0.90.70.61.0
Run reversals in cocaine runway, males0.40.50.90.3-0.9-1.0-0.0
Latency to leave start box in cocaine runway2.12.95.11.6-2.3-1.7-1.1
Latency to leave start box in cocaine runway, F2.02.55.50.8-2.3-2.0-0.1
Latency to leave start box in cocaine runway, M1.91.83.61.7-0.8-0.3-1.9
Std. dev. time between licks in bursts0.10.20.40.0-0.40.70.3
Total sessions with >9 infusions0.30.41.3-0.2-0.0-1.1-0.6
Short access day 1 total inactive lever presses0.00.10.1-0.3-0.3-0.0-0.1
Short access day 10 total inactive lever presses0.00.20.70.4-0.8-0.4-0.1
Short access day 1 total infusions0.10.30.6-0.6-0.2-0.80.3
Short access day 10 total infusions0.40.71.5-1.2-0.3-1.00.5
Short access total infusions0.40.51.2-0.90.0-1.10.3
Short access day 1 locomotion0.30.51.90.00.2-0.2-1.4
Short access day 10 total locomotion0.10.51.3-0.80.4-0.11.2
Short access total locomotion0.60.92.30.3-0.7-1.5-0.9
One hour access (0.3 mA shock)0.00.10.1-0.4-0.2-0.10.3
Compulsive drug intake0.30.51.11.1-0.20.4-0.8
One hour access (shock baseline)0.30.81.9-1.40.4-0.31.0
Social response proportion2.63.35.81.6-2.4-2.0-1.0
Social responses7.39.613.92.8-3.7-3.6-1.7
Social time1.62.53.51.3-1.9-1.7-1.4
Soleus weight0.30.91.70.9-1.3-1.1-0.2
Bone: stiffness3.25.89.23.0-2.1-2.3-2.1
Tibialis anterior weight0.41.33.21.80.1-0.3-1.4
Time to tail flick, vehicle, before self-admin0.20.20.7-0.20.80.10.2
Time to tail flick, vehicle, after self-admin0.40.92.20.1-0.9-1.5-0.7
Time to tail flick, test, before self-admin0.20.20.5-0.1-0.7-0.5-0.1
Time to tail flick, test, after self-admin0.80.92.80.6-1.7-0.6-0.0
Delta time to tail flick, vehicle, before/after SA3.63.95.81.3-2.3-2.4-1.7
Delta time to tail flick, test, before/after SA0.91.11.71.3-1.2-0.9-0.7
Tibia length0.20.61.21.1-0.5-0.3-0.8
Ambulatory time before self-admin0.10.20.40.4-0.0-0.60.3
Ambulatory time after self-admin0.10.10.20.10.50.30.3
Bone: tissue strength0.20.20.4-0.30.10.40.6
Total heroin consumption0.30.40.6-0.80.50.10.7
Bone: trabecular number0.20.40.60.2-0.7-0.70.6
Bone: trabecular spacing0.30.50.70.5-0.8-0.5-0.8
Bone: trabecular thickness0.10.10.30.5-0.3-0.30.3
Bone: trabecular tissue density2.23.87.12.7-1.2-1.9-1.8
Water consumed over 24 hours0.71.43.40.6-1.9-1.2-0.3
Number of responses in last shaping day1.11.41.81.3-0.7-1.3-1.3