LOC134481988

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC134481988 0.03 0.02 2.7e-04 0.01 0.02 0.01 0.01 1.4e-02 3.2e-04 4.2e-03 4.8e-03
2 PL gene expression LOC134481988 0.03 0.02 2.1e-03 0.03 0.02 0.03 0.02 2.2e-04 1.9e-03 8.9e-04 1.2e-03
3 NAcc intron excision ratio chr15_55351279_55359072 0.49 0.11 0.0e+00 0.34 0.35 0.35 0.35 1.0e-53 1.2e-54 2.1e-54 1.7e-54

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.54.5-0.00.1-2.1
Area under the delay curve0.50.82.20.4-0.3-1.5
BMI with tail0.10.40.9-0.60.2-0.9
BMI without tail0.10.60.8-0.90.6-0.7
Body weight0.21.12.51.60.6-0.6
Weight adjusted by age0.51.62.5-0.7-1.31.6
Bone surface0.81.54.40.2-0.4-2.1
Bone volume1.22.36.80.1-0.3-2.6
Breakpoint value in progressive ratio session0.20.30.7-0.2-0.90.3
Number of licking bursts0.20.61.10.71.1-0.4
Context. condit. distance diff. score1.41.73.0-0.91.7-1.1
Locomotion velocity, session 10.70.81.6-0.7-1.30.5
Locomotion distance, session 10.30.40.50.6-0.5-0.7
Locomotion velocity, session 20.10.10.10.3-0.40.3
Locomotion distance, session 20.71.01.61.0-0.7-1.3
Locomotion velocity, session 30.30.30.8-0.90.40.1
Locomotion distance, session 30.40.40.7-0.40.8-0.6
Stereotopy head waving bouts, day 31.01.23.0-0.6-0.41.7
Stereotopy head waving duration, day 30.40.50.8-0.5-0.70.9
Locomotion velocity, session 73.94.311.2-0.93.4-0.9
Locomotion distance, session 72.12.75.4-1.22.3-1.1
Stereotopy head waving bouts, day 70.30.40.60.80.30.6
Stereotopy head waving duration, day 70.60.71.80.6-0.21.3
Locomotion velocity, session 80.50.61.20.11.1-0.8
Locomotion distance, session 81.82.65.70.51.4-2.4
Degree of sensitization distance0.80.91.6-0.91.3-0.3
Degree of sensitization stereotypy0.40.41.01.00.20.5
Conditioned locomotion0.30.30.7-0.9-0.20.5
Cocaine response after cond. corrected1.52.23.9-2.0-1.01.4
Cocaine response after cond. not corrected0.50.71.9-1.4-0.30.4
Cocaine response before conditioning2.83.44.02.01.5-1.9
Saline control response0.91.23.41.90.4-0.3
Bone: connectivity density0.20.30.60.70.4-0.5
Bone: cortical apparent density1.01.64.4-0.6-0.22.1
Bone: cortical area0.30.51.4-0.10.0-1.2
Bone: cortical porosity2.12.33.41.70.8-1.9
Bone: cortical porosity1.92.13.71.60.4-1.9
Bone: cortical thickness0.20.30.60.50.8-0.2
Bone: cortical thickness0.20.30.4-0.60.30.6
Bone: cortical tissue density1.01.64.5-0.6-0.12.1
Condit. Reinf. active minus inactive responses1.21.32.11.50.41.3
Condit. Reinf. active-inactive response ratio1.31.33.0-0.6-0.81.7
Condit. Reinf. active responses1.82.35.32.31.10.7
Condit. Reinf. inactive responses3.44.48.73.01.6-1.3
Incentive salience index mean2.53.37.82.81.30.6
Condit. Reinf. lever presses3.85.813.63.71.9-0.2
Condit. Reinf. active minus inactive responses0.40.61.20.30.71.1
Condit. Reinf. active-inactive response ratio0.10.20.3-0.50.50.0
Condit. Reinf. active responses0.30.51.00.61.00.3
Condit. Reinf. inactive responses0.60.91.61.31.0-0.2
Condit. Reinf. lever presses0.91.32.11.40.8-1.1
Condit. Reinf. lever reinforcers received0.50.61.30.81.1-0.1
Conditioned reinforcement - actives0.10.51.2-1.1-0.10.5
Conditioned reinforcement - inactives1.02.83.71.91.5-1.5
Conditioned locomotion0.91.32.5-0.9-0.8-1.6
Patch foraging indifference point 0 sec1.95.410.23.22.2-1.1
Patch foraging indifference point AUC0.92.15.8-2.4-0.8-0.1
Delay disc. indifference point, 0s delay0.20.30.50.7-0.50.3
Delay disc. indifference point, 16s delay0.40.51.30.4-0.4-1.1
Delay disc. indifference point, 2s delay0.80.91.8-1.0-1.4-0.3
Delay disc. indifference point, 24s delay0.30.40.9-0.6-0.2-0.9
Delay disc. indifference point, 4s delay0.40.40.8-0.7-0.90.0
Delay disc. indifference point, 8s delay0.50.91.80.90.4-1.3
Indifference point function ln k0.82.56.42.51.1-0.1
Indifference point function log k0.82.56.42.51.1-0.1
Patch foraging total patch changes 0 sec1.85.310.43.22.1-1.1
Patch foraging total patch changes 12 sec0.81.11.41.20.8-1.2
Patch foraging total patch changes 18 sec0.30.61.30.51.1-0.5
Patch foraging total patch changes 24 sec0.51.82.41.51.2-1.3
Patch foraging total patch changes 6 sec1.22.03.91.32.0-0.4
Patch foraging time to switch 0 sec0.00.00.10.3-0.10.2
Patch foraging water rate 0 sec0.31.32.11.50.9-0.9
Patch foraging water rate 12 sec0.20.92.20.6-0.01.5
Patch foraging water rate 18 sec0.00.00.1-0.10.10.3
Patch foraging water rate 24 sec0.40.50.70.40.90.8
Patch foraging water rate 6 sec0.10.20.30.5-0.50.0
Seeking ratio, delayed vs. immediate footshock1.11.64.60.40.22.1
Distance traveled before self-admin0.61.33.5-0.6-1.90.4
Distance traveled after self-admin1.42.53.7-1.9-1.90.5
Extensor digitorum longus weight3.313.327.7-3.2-5.31.3
Bone: elastic displacement0.30.40.80.9-0.10.6
Bone: elastic work0.81.01.71.2-0.2-1.3
Bone: endosteal estimation0.51.22.9-0.4-0.6-1.7
Bone: endosteal perimeter0.30.81.0-0.6-1.0-1.0
Epididymis fat weight0.31.42.21.31.5-0.6
Delta time in closed arm before/after self-admin1.61.53.60.20.9-1.9
Delta time in open arm before/after self-admin0.10.10.2-0.4-0.2-0.2
Diff in mean of infusions in LGA sessions0.20.30.60.4-0.40.8
Delay discount exponential model param0.60.92.4-0.20.41.5
Extinction: sum of active levers before priming0.50.81.30.70.7-1.1
Active lever presses in extinction session 60.50.50.80.40.9-0.8
Bone: final force1.11.82.01.31.4-1.4
Bone: final moment1.01.61.91.41.1-1.2
Food consumed during 24 hour testing period0.30.51.60.20.0-1.3
Glucose0.81.32.4-1.50.0-1.2
Heart weight0.20.20.6-0.20.3-0.8
Delay discount hyperbolic model param0.50.71.8-0.00.51.3
Intermittent access intake day 1-15 change0.52.54.21.82.0-0.4
Intermittent access intake escalation0.53.04.62.02.2-0.5
Intermittent access intake escalation 20.40.71.90.41.4-0.1
Intermitt. access day 1 inactive lever presses0.11.62.70.81.21.6
Intermitt. access day 15 inactive lever presses0.21.32.11.51.3-0.4
Intermitt. access escalation Index0.00.00.00.1-0.1-0.1
Intermittent access day 1 total infusions0.41.21.91.10.7-1.4
Intermittent access day 15 total infusions1.33.14.42.12.0-1.0
Intermittent access terminal intake (last 3 days)0.91.52.41.11.6-0.9
Intermittent access total infusions1.92.32.71.61.6-1.3
Intermittent access day 1 locomotion1.12.03.31.81.3-1.1
Intermittent access day 15 total locomotion0.10.30.80.40.9-0.2
Intermittent access total locomotion0.91.11.61.31.1-0.7
Intermittent access standard deviation0.00.20.30.6-0.2-0.6
Left kidney weight0.64.86.42.51.7-2.3
Right kidney weight0.75.29.63.10.7-2.4
Cocaine induced anxiety0.30.81.71.3-0.80.3
Post-drug Anxiety0.91.12.31.50.20.9
Baseline Anxiety0.50.82.2-0.11.5-0.3
Tail length0.31.52.81.71.1-0.7
Length with tail0.62.56.92.60.30.6
Length without tail0.31.82.61.1-1.21.6
Times rat made contact with spout2.22.54.21.02.1-1.5
Lifetime Intake1.51.91.91.41.3-1.4
Liver weight, left0.71.31.81.3-1.01.0
Liver weight, right0.30.60.9-0.3-1.0-0.9
Locomotor activity2.03.17.01.5-2.6-0.2
Locomotor testing distance1.02.55.42.3-1.4-0.2
Locomotor testing rearing0.82.97.72.8-0.9-0.4
Locomotion in novel chamber1.72.25.51.00.5-2.3
Locomotion in novel chamber post-restriction0.30.81.2-1.0-0.4-1.1
Fecal boli incidents, locomotor time 10.61.42.91.0-0.6-1.7
Change in fecal boli incidents, locomotor task2.12.24.9-1.0-0.82.2
Time >=10cm from walls, locomotor time 10.60.81.81.40.5-0.5
Bouts of movement, locomotor time 10.60.81.4-0.6-0.81.2
Total resting periods, locomotor time 10.91.11.6-0.9-0.91.3
Rest time, locomotor task time 10.61.01.7-1.1-1.3-0.2
Distance moved, locomotor task time 10.41.22.40.81.50.8
Vertical activity count, locomotor time 10.00.30.40.4-0.50.7
Time >=10cm from walls, locomotor time 20.41.12.4-0.7-1.50.7
Bouts of movement, locomotor time 20.31.01.3-1.1-1.10.8
Total resting periods, locomotor time 20.20.71.0-0.9-1.00.5
Rest time, locomotor task time 20.30.50.9-0.5-0.6-0.9
Distance moved, locomotor task time 20.71.01.41.21.10.6
Vertical activity count, locomotor time 20.20.41.1-0.3-1.00.1
Light reinforcement 10.52.54.70.92.2-1.3
Light reinforcement 20.51.12.0-1.01.4-0.5
Bone: marrow area0.51.23.2-0.4-0.6-1.8
Bone: maximum diameter0.51.02.1-1.4-0.7-0.7
Bone: maximum force0.71.32.90.90.6-1.7
Bone: maximum moment0.71.22.51.10.3-1.6
Mean time between licks in bursts0.00.20.3-0.10.5-0.4
Mean num. licks in bursts0.10.20.5-0.10.2-0.7
Cd content in liver0.60.61.50.5-1.20.4
Co content in liver3.13.66.0-2.5-2.00.9
Cu content in liver0.70.81.5-0.8-0.71.2
Fe content in liver0.30.40.80.30.40.9
K content in liver0.70.71.60.41.2-0.7
Mg content in liver0.20.20.3-0.20.5-0.4
Mn content in liver0.50.50.9-0.8-0.3-0.9
Na content in liver0.70.82.21.5-0.1-0.6
Rb content in liver0.80.92.70.2-0.11.6
Se content in liver0.50.61.10.3-1.00.9
Sr content in liver1.11.01.7-1.0-1.3-0.3
Zn content in liver0.10.10.30.2-0.50.3
Bone: minimum diameter0.30.61.50.1-0.4-1.2
Time in familiar zone, hab. session 11.01.11.50.51.2-1.2
Time in novel zone, hab. session 14.44.95.7-2.2-2.12.4
Total zone transitions, hab. session 10.10.10.3-0.1-0.6-0.1
Total locomotion distance, hab. session 10.10.20.30.5-0.40.1
Locomotion velocity, hab. session 10.71.01.91.4-0.1-1.0
Time in familiar zone, hab. session 20.60.71.1-1.1-0.9-0.2
Time in novel zone, hab. session 20.10.10.30.10.20.5
Total zone transitions, hab. session 21.01.33.10.8-1.80.2
Total locomotion distance, hab. session 20.70.91.80.8-1.30.5
Locomotion velocity, hab. session 20.81.12.50.8-1.60.3
Novel to familiar place preference ratio0.91.12.01.41.20.2
Novelty place preference1.11.52.51.61.40.2
Time in novel zone, NPP test0.91.11.71.31.20.2
Total zone transitions, NPP test0.40.61.31.1-0.6-0.4
Total locomotion distance, NPP test0.71.02.41.60.0-0.7
Locomotion velocity, NPP test0.81.23.21.80.2-0.6
Intraocular pressure0.50.81.50.81.20.5
Delta distance traveled before/after self-admin1.21.32.9-1.7-0.50.8
Delta ambulatory time before/after self-admin0.40.71.1-1.0-0.50.8
Parametrial fat weight0.81.83.61.41.9-0.0
Pavlov. Cond. lever latency2.33.06.4-2.5-1.50.4
Pavlov. Cond. magazine entry latency0.30.40.80.90.7-0.1
Pavlov. Cond. change in total contacts1.31.43.61.90.70.2
Pavlov. Cond. index score2.22.85.82.41.4-0.7
Pavlov. Cond. latency score2.73.46.72.61.8-0.6
Pavlov. Cond. lever contacts3.23.87.52.71.8-0.7
Pavlov. Cond. magazine entry number0.30.30.6-0.8-0.30.5
Pavlov. Cond. intertrial magazine entries1.01.23.11.80.8-0.2
Pavlov. Cond. lever-magazine prob. diff.1.92.44.92.21.2-0.9
Pavlov. Cond. response bias0.60.71.61.30.5-0.4
Pavlov. Cond. lever latency0.60.81.5-1.20.21.0
Pavlov. Cond. magazine entry latency2.02.87.01.10.1-2.7
Pavlov. Cond. change in total contacts0.40.92.6-0.2-1.60.0
Pavlov. Cond. index score0.91.42.91.1-0.6-1.7
Pavlov. Cond. latency score0.81.32.41.1-0.5-1.6
Pavlov. Cond. lever contacts0.91.32.01.3-0.2-1.4
Pavlov. Cond. magazine entry number1.51.95.2-0.6-0.22.3
Pavlov. Cond. intertrial magazine entries1.22.76.01.12.5-0.8
Pavlov. Cond. lever-magazine prob. diff.0.81.22.80.8-0.5-1.7
Pavlov. Cond. response bias1.41.94.11.2-0.4-2.0
Time in closed arm before self-admin0.00.10.2-0.4-0.20.1
Time in closed arm after self-admin0.10.10.20.20.4-0.4
Time in open arm before self-admin0.20.20.4-0.2-0.50.6
Time in open arm after self-admin0.30.40.7-0.8-0.6-0.2
Bone: periosteal estimation0.41.02.5-0.6-0.5-1.6
Bone: periosteal perimeter0.30.50.6-0.8-0.5-0.8
Bone: post-yield work0.71.22.5-0.80.7-1.6
Progressive ratio test 1 active lever presses0.10.20.4-0.10.5-0.6
Progressive ratio test 1 breakpoint0.10.20.3-0.20.4-0.6
Progressive ratio test 1 inactive lever presses0.82.04.31.22.10.5
Progressive ratio test 2 active lever presses0.60.81.5-0.00.9-1.2
Progressive ratio test 2 breakpoint0.70.91.80.10.9-1.3
Progressive ratio test 2 inactive lever presses0.51.42.21.21.5-0.8
Incentive Sensitization - Responses0.41.12.6-0.00.8-1.6
Incentive Sensitization - Breakpoint0.51.22.80.20.9-1.7
Sum of active levers in priming session hrs 5-61.71.63.2-1.8-0.51.2
Progressive ratio0.10.30.6-0.8-0.5-0.0
Food seeking constrained by brief footshock5.16.38.2-2.9-2.32.4
Seeking ratio, punishment vs. effort0.51.11.4-1.2-0.81.1
Retroperitoneal fat weight0.52.04.01.32.00.6
Reaction time number correct0.62.24.4-2.1-1.11.0
Reaction time mean minus median0.10.81.51.2-0.80.5
Reaction time mean minus median AUC0.00.20.40.6-0.2-0.2
Reaction time num false alarms0.30.41.0-0.4-0.3-1.0
Reaction time num false alarms AUC0.30.61.6-0.5-0.0-1.3
Reaction time trials correct on left0.62.24.4-2.1-1.11.0
Reaction time trials on left0.62.14.2-2.1-1.11.1
Reaction time mean0.10.30.60.6-0.80.1
Reaction time mean AUC0.20.51.10.5-1.00.3
Median of all reaction times0.10.20.50.1-0.70.0
Reaction time omissions0.20.30.60.50.30.8
Reaction time false alarm rate0.81.12.50.50.6-1.6
Reaction time premature initiation rate1.21.95.5-0.3-0.22.4
Reaction time premature initiations1.23.57.7-1.5-0.72.8
Std. dev. reaction times0.20.60.80.7-0.90.8
Reaction time trials completed0.62.14.2-2.1-1.11.1
Reaction time trials AUC0.62.24.3-2.1-1.11.0
Run reversals in cocaine runway, females0.91.02.3-0.90.1-1.5
Run reversals in cocaine runway, males1.01.12.50.7-0.6-1.6
Latency to leave start box in cocaine runway1.01.41.9-0.8-1.41.2
Latency to leave start box in cocaine runway, F0.81.01.6-0.5-1.21.3
Latency to leave start box in cocaine runway, M0.80.81.4-0.9-1.20.4
Std. dev. time between licks in bursts0.50.91.71.31.00.2
Total sessions with >9 infusions0.40.51.10.60.2-1.1
Short access day 1 total inactive lever presses1.93.85.52.30.9-2.3
Short access day 10 total inactive lever presses0.10.60.80.90.90.3
Short access day 1 total infusions0.40.81.90.60.4-1.4
Short access day 10 total infusions0.71.11.91.1-0.3-1.4
Short access total infusions0.81.12.01.10.3-1.4
Short access day 1 locomotion0.61.01.90.6-0.9-1.4
Short access day 10 total locomotion0.10.51.30.4-0.1-1.2
Short access total locomotion0.50.81.31.0-0.2-1.1
One hour access (0.3 mA shock)1.21.42.41.30.5-1.5
Compulsive drug intake1.42.13.82.01.3-1.0
One hour access (shock baseline)0.10.20.3-0.1-0.5-0.4
Social response proportion2.22.75.1-2.3-0.51.7
Social responses0.81.01.4-1.20.41.2
Social time0.10.20.40.60.3-0.4
Soleus weight3.410.017.0-3.2-4.11.7
Bone: stiffness0.61.11.71.00.7-1.3
Tibialis anterior weight2.17.418.3-1.9-4.30.0
Time to tail flick, vehicle, before self-admin1.92.33.61.81.9-0.2
Time to tail flick, vehicle, after self-admin0.91.94.7-0.9-0.42.2
Time to tail flick, test, before self-admin1.61.82.81.11.1-1.7
Time to tail flick, test, after self-admin0.90.91.60.11.31.1
Delta time to tail flick, vehicle, before/after SA1.11.21.7-1.2-0.71.3
Delta time to tail flick, test, before/after SA1.21.52.5-1.40.41.6
Tibia length5.816.231.65.63.4-2.3
Ambulatory time before self-admin0.20.51.5-0.3-1.2-0.2
Ambulatory time after self-admin1.52.55.1-1.3-2.30.7
Bone: tissue strength0.10.10.20.30.4-0.3
Total heroin consumption0.40.41.2-0.2-1.1-0.2
Bone: trabecular number0.40.71.90.20.4-1.4
Bone: trabecular spacing0.71.01.2-0.8-1.11.1
Bone: trabecular thickness1.82.54.71.21.2-2.2
Bone: trabecular tissue density0.40.81.9-0.6-1.40.2
Water consumed over 24 hours0.20.30.80.0-0.4-0.9
Number of responses in last shaping day0.30.40.7-0.8-0.5-0.4