LOC134481832

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XR_010057679.1 0.03 0.02 4.4e-04 0.03 0.02 0.02 0.02 1.1e-04 3.6e-03 1.1e-03 2.1e-03
2 Adipose alternative TSS XR_010057679.1 0.02 0.01 5.9e-03 0.02 0.01 0.01 0.02 1.9e-03 9.7e-03 1.1e-02 5.4e-03
3 Adipose alternative TSS XR_010057678.1 0.02 0.02 4.6e-03 0.02 0.01 0.02 0.02 2.5e-03 7.9e-03 4.8e-03 5.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.00.10.1-0.1
Area under the delay curve0.20.20.3-0.5-0.5-0.1
BMI with tail0.62.26.50.00.0-2.6
BMI without tail0.51.64.80.00.0-2.2
Body weight0.00.00.10.00.0-0.4
Weight adjusted by age0.81.31.31.21.2-1.0
Bone surface0.00.00.0-0.1-0.10.1
Bone volume0.40.70.7-0.8-0.80.9
Breakpoint value in progressive ratio session0.60.70.8-0.8-0.80.9
Number of licking bursts0.00.00.10.10.1-0.3
Context. condit. distance diff. score0.30.30.3-0.6-0.60.5
Locomotion velocity, session 10.91.01.11.01.0-1.0
Locomotion distance, session 10.50.61.3-0.5-0.51.1
Locomotion velocity, session 20.10.10.1-0.3-0.3-0.2
Locomotion distance, session 20.20.30.4-0.5-0.50.6
Locomotion velocity, session 30.30.40.9-0.3-0.30.9
Locomotion distance, session 30.00.00.10.20.20.1
Stereotopy head waving bouts, day 30.50.60.80.90.9-0.4
Stereotopy head waving duration, day 30.10.20.20.50.5-0.1
Locomotion velocity, session 72.73.03.3-1.8-1.81.5
Locomotion distance, session 71.92.43.3-1.8-1.80.7
Stereotopy head waving bouts, day 70.40.50.70.80.8-0.0
Stereotopy head waving duration, day 70.50.60.91.01.0-0.1
Locomotion velocity, session 80.00.10.10.30.30.1
Locomotion distance, session 80.81.21.4-1.1-1.11.2
Degree of sensitization distance2.82.93.9-2.0-2.01.0
Degree of sensitization stereotypy0.20.20.30.50.50.3
Conditioned locomotion1.11.22.10.90.9-1.4
Cocaine response after cond. corrected0.70.90.9-1.0-1.00.8
Cocaine response after cond. not corrected0.70.91.0-0.9-0.91.0
Cocaine response before conditioning0.10.20.20.50.5-0.0
Saline control response0.60.81.0-1.0-1.00.8
Bone: connectivity density0.20.40.40.70.7-0.5
Bone: cortical apparent density0.30.40.70.50.5-0.9
Bone: cortical area1.01.51.5-1.2-1.21.2
Bone: cortical porosity3.03.23.31.81.8-1.8
Bone: cortical porosity4.65.05.32.32.3-2.1
Bone: cortical thickness0.00.00.00.10.1-0.1
Bone: cortical thickness0.50.60.7-0.8-0.80.6
Bone: cortical tissue density0.50.61.00.70.7-1.0
Condit. Reinf. active minus inactive responses0.40.40.70.50.5-0.9
Condit. Reinf. active-inactive response ratio1.51.62.11.11.1-1.5
Condit. Reinf. active responses0.00.00.10.10.1-0.3
Condit. Reinf. inactive responses0.70.81.3-0.7-0.71.2
Incentive salience index mean0.10.10.2-0.0-0.0-0.4
Condit. Reinf. lever presses0.10.20.40.20.2-0.6
Condit. Reinf. active minus inactive responses0.20.30.40.60.6-0.5
Condit. Reinf. active-inactive response ratio0.00.00.10.10.10.2
Condit. Reinf. active responses0.10.10.20.20.2-0.5
Condit. Reinf. inactive responses0.30.40.5-0.7-0.7-0.1
Condit. Reinf. lever presses0.20.20.3-0.6-0.60.3
Condit. Reinf. lever reinforcers received0.10.10.20.20.2-0.4
Conditioned reinforcement - actives0.30.50.6-0.8-0.8-0.4
Conditioned reinforcement - inactives0.10.10.4-0.1-0.10.6
Conditioned locomotion1.11.52.0-1.4-1.40.5
Patch foraging indifference point 0 sec0.00.00.10.10.10.3
Patch foraging indifference point AUC3.14.55.3-2.3-2.31.7
Delay disc. indifference point, 0s delay0.10.10.40.10.1-0.6
Delay disc. indifference point, 16s delay0.20.30.30.50.5-0.6
Delay disc. indifference point, 2s delay3.64.05.3-2.3-2.31.1
Delay disc. indifference point, 24s delay0.00.00.1-0.1-0.1-0.3
Delay disc. indifference point, 4s delay0.30.30.4-0.7-0.70.2
Delay disc. indifference point, 8s delay0.30.41.10.20.2-1.1
Indifference point function ln k1.22.12.81.71.7-0.9
Indifference point function log k1.22.12.81.71.7-0.9
Patch foraging total patch changes 0 sec0.00.10.2-0.1-0.10.4
Patch foraging total patch changes 12 sec2.12.73.5-1.9-1.91.1
Patch foraging total patch changes 18 sec0.00.00.1-0.0-0.00.3
Patch foraging total patch changes 24 sec0.91.52.0-1.4-1.40.8
Patch foraging total patch changes 6 sec1.32.02.1-1.4-1.41.4
Patch foraging time to switch 0 sec3.26.57.62.82.8-2.1
Patch foraging water rate 0 sec2.55.25.9-2.4-2.41.9
Patch foraging water rate 12 sec0.81.72.5-1.6-1.60.5
Patch foraging water rate 18 sec2.94.55.1-2.3-2.31.8
Patch foraging water rate 24 sec1.72.43.1-1.8-1.80.9
Patch foraging water rate 6 sec2.43.44.3-2.1-2.11.3
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.1-0.10.5
Distance traveled before self-admin0.20.30.40.60.60.1
Distance traveled after self-admin2.22.72.8-1.6-1.61.7
Extensor digitorum longus weight11.143.647.66.56.5-6.9
Bone: elastic displacement0.20.20.30.50.5-0.4
Bone: elastic work0.60.70.80.90.9-0.8
Bone: endosteal estimation1.32.83.0-1.7-1.71.6
Bone: endosteal perimeter0.20.50.5-0.7-0.70.7
Epididymis fat weight0.00.10.30.00.0-0.5
Delta time in closed arm before/after self-admin0.40.30.50.50.5-0.7
Delta time in open arm before/after self-admin0.10.10.2-0.1-0.10.5
Diff in mean of infusions in LGA sessions0.30.41.2-0.0-0.01.1
Delay discount exponential model param0.30.30.50.70.7-0.0
Extinction: sum of active levers before priming0.20.20.30.50.50.0
Active lever presses in extinction session 61.11.01.9-0.8-0.81.4
Bone: final force0.20.30.3-0.6-0.60.5
Bone: final moment0.30.40.5-0.7-0.70.6
Food consumed during 24 hour testing period0.81.21.7-1.3-1.30.1
Glucose0.30.41.30.00.01.1
Heart weight0.00.00.00.00.00.1
Delay discount hyperbolic model param0.60.71.01.01.0-0.2
Intermittent access intake day 1-15 change0.20.50.80.50.5-0.9
Intermittent access intake escalation0.30.70.80.80.8-0.9
Intermittent access intake escalation 20.10.10.3-0.1-0.10.5
Intermitt. access day 1 inactive lever presses0.51.92.0-1.4-1.41.2
Intermitt. access day 15 inactive lever presses2.04.14.3-2.1-2.11.9
Intermitt. access escalation Index1.01.51.81.41.4-0.8
Intermittent access day 1 total infusions0.00.00.0-0.2-0.2-0.0
Intermittent access day 15 total infusions0.00.00.0-0.1-0.10.0
Intermittent access terminal intake (last 3 days)0.60.70.9-0.8-0.80.9
Intermittent access total infusions0.10.10.2-0.2-0.20.5
Intermittent access day 1 locomotion0.60.71.0-1.0-1.00.4
Intermittent access day 15 total locomotion0.51.01.2-1.1-1.10.8
Intermittent access total locomotion0.30.30.5-0.7-0.70.2
Intermittent access standard deviation0.20.50.5-0.7-0.70.7
Left kidney weight0.00.20.60.00.00.8
Right kidney weight0.20.72.10.00.01.4
Cocaine induced anxiety0.00.00.00.10.1-0.2
Post-drug Anxiety0.00.00.00.10.10.1
Baseline Anxiety0.00.10.10.30.30.2
Tail length0.31.03.00.00.01.7
Length with tail0.52.05.90.00.02.4
Length without tail0.20.72.20.00.01.5
Times rat made contact with spout0.10.10.2-0.4-0.4-0.2
Lifetime Intake0.10.10.10.40.4-0.2
Liver weight, left0.10.10.40.00.00.7
Liver weight, right0.10.30.80.00.00.9
Locomotor activity1.42.22.3-1.5-1.51.4
Locomotor testing distance0.30.51.1-0.5-0.51.1
Locomotor testing rearing0.10.30.8-0.2-0.20.9
Locomotion in novel chamber0.00.10.10.10.10.4
Locomotion in novel chamber post-restriction0.40.61.7-0.3-0.31.3
Fecal boli incidents, locomotor time 11.21.72.61.61.6-0.1
Change in fecal boli incidents, locomotor task1.51.51.61.21.2-1.3
Time >=10cm from walls, locomotor time 13.03.14.22.02.0-1.0
Bouts of movement, locomotor time 11.41.52.31.51.50.1
Total resting periods, locomotor time 11.01.11.71.31.30.1
Rest time, locomotor task time 10.40.61.7-0.0-0.01.3
Distance moved, locomotor task time 10.30.51.3-0.2-0.2-1.2
Vertical activity count, locomotor time 10.51.21.8-1.3-1.3-0.1
Time >=10cm from walls, locomotor time 21.11.62.01.41.4-1.0
Bouts of movement, locomotor time 20.00.00.1-0.1-0.10.3
Total resting periods, locomotor time 20.00.00.0-0.1-0.10.1
Rest time, locomotor task time 20.00.00.1-0.1-0.10.3
Distance moved, locomotor task time 20.60.72.00.10.1-1.4
Vertical activity count, locomotor time 20.40.50.7-0.9-0.9-0.1
Light reinforcement 11.02.52.7-1.6-1.61.6
Light reinforcement 20.10.10.10.30.30.4
Bone: marrow area1.22.72.8-1.7-1.71.5
Bone: maximum diameter0.20.30.3-0.6-0.60.5
Bone: maximum force0.61.11.2-1.1-1.10.9
Bone: maximum moment0.81.41.6-1.3-1.31.0
Mean time between licks in bursts1.74.15.12.32.3-1.4
Mean num. licks in bursts0.20.30.3-0.6-0.60.4
Cd content in liver4.24.64.72.12.1-2.2
Co content in liver0.10.20.30.50.5-0.0
Cu content in liver0.20.20.4-0.6-0.60.2
Fe content in liver0.20.20.60.10.1-0.8
K content in liver0.20.20.3-0.5-0.50.0
Mg content in liver0.00.00.0-0.2-0.20.1
Mn content in liver0.10.10.30.30.3-0.5
Na content in liver0.30.30.3-0.6-0.60.5
Rb content in liver1.21.41.41.21.2-1.2
Se content in liver0.00.00.1-0.1-0.10.4
Sr content in liver0.00.00.1-0.0-0.00.2
Zn content in liver0.50.50.70.70.7-0.8
Bone: minimum diameter7.413.614.0-3.7-3.73.7
Time in familiar zone, hab. session 10.10.10.1-0.4-0.4-0.1
Time in novel zone, hab. session 10.20.20.30.50.5-0.3
Total zone transitions, hab. session 10.10.10.1-0.4-0.40.3
Total locomotion distance, hab. session 10.91.21.3-1.1-1.11.1
Locomotion velocity, hab. session 10.60.91.1-0.9-0.91.0
Time in familiar zone, hab. session 20.30.30.40.60.6-0.6
Time in novel zone, hab. session 20.50.50.6-0.8-0.80.6
Total zone transitions, hab. session 20.10.10.30.10.10.6
Total locomotion distance, hab. session 20.50.61.3-0.5-0.51.1
Locomotion velocity, hab. session 20.30.40.9-0.4-0.41.0
Novel to familiar place preference ratio0.10.10.1-0.3-0.3-0.4
Novelty place preference0.10.10.4-0.1-0.1-0.6
Time in novel zone, NPP test0.10.10.1-0.3-0.3-0.4
Total zone transitions, NPP test0.00.00.0-0.0-0.00.1
Total locomotion distance, NPP test0.00.00.1-0.1-0.10.3
Locomotion velocity, NPP test0.00.00.10.20.2-0.1
Intraocular pressure0.40.60.90.90.9-0.2
Delta distance traveled before/after self-admin3.33.54.8-2.2-2.20.9
Delta ambulatory time before/after self-admin1.41.72.5-1.6-1.60.5
Parametrial fat weight0.10.20.60.00.00.8
Pavlov. Cond. lever latency1.92.32.81.71.7-1.2
Pavlov. Cond. magazine entry latency0.10.10.30.10.1-0.6
Pavlov. Cond. change in total contacts0.40.40.6-0.8-0.80.4
Pavlov. Cond. index score0.40.50.8-0.9-0.90.3
Pavlov. Cond. latency score0.70.81.2-1.1-1.10.5
Pavlov. Cond. lever contacts2.02.42.8-1.7-1.71.3
Pavlov. Cond. magazine entry number0.10.10.10.20.20.3
Pavlov. Cond. intertrial magazine entries0.40.51.0-0.5-0.51.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.7-0.8-0.80.2
Pavlov. Cond. response bias0.30.30.5-0.7-0.70.1
Pavlov. Cond. lever latency1.01.31.9-1.0-1.01.4
Pavlov. Cond. magazine entry latency2.22.73.21.81.8-1.3
Pavlov. Cond. change in total contacts0.91.41.51.21.2-1.0
Pavlov. Cond. index score1.62.22.31.51.5-1.4
Pavlov. Cond. latency score1.92.52.81.71.7-1.4
Pavlov. Cond. lever contacts0.40.60.80.70.7-0.9
Pavlov. Cond. magazine entry number3.24.04.4-2.1-2.11.8
Pavlov. Cond. intertrial magazine entries2.03.03.3-1.8-1.81.6
Pavlov. Cond. lever-magazine prob. diff.1.62.22.31.51.5-1.4
Pavlov. Cond. response bias1.31.82.01.31.3-1.4
Time in closed arm before self-admin0.81.12.2-0.7-0.71.5
Time in closed arm after self-admin0.20.20.60.10.10.8
Time in open arm before self-admin0.60.71.6-0.5-0.5-1.3
Time in open arm after self-admin0.10.10.1-0.3-0.3-0.3
Bone: periosteal estimation1.32.72.9-1.7-1.71.6
Bone: periosteal perimeter0.50.90.9-1.0-1.00.9
Bone: post-yield work0.30.50.6-0.7-0.70.8
Progressive ratio test 1 active lever presses0.20.20.2-0.4-0.40.5
Progressive ratio test 1 breakpoint0.10.20.2-0.4-0.40.5
Progressive ratio test 1 inactive lever presses1.11.71.9-1.4-1.41.1
Progressive ratio test 2 active lever presses0.20.30.3-0.5-0.50.5
Progressive ratio test 2 breakpoint0.20.30.3-0.5-0.50.6
Progressive ratio test 2 inactive lever presses1.11.82.0-1.3-1.31.4
Incentive Sensitization - Responses0.10.20.30.50.5-0.1
Incentive Sensitization - Breakpoint0.10.20.20.50.5-0.1
Sum of active levers in priming session hrs 5-60.20.20.3-0.5-0.5-0.3
Progressive ratio0.00.00.00.20.2-0.1
Food seeking constrained by brief footshock0.40.40.60.60.6-0.8
Seeking ratio, punishment vs. effort0.20.30.4-0.6-0.60.2
Retroperitoneal fat weight0.00.00.10.00.00.2
Reaction time number correct0.20.40.5-0.6-0.60.7
Reaction time mean minus median0.61.42.01.11.1-1.4
Reaction time mean minus median AUC0.20.50.50.70.7-0.7
Reaction time num false alarms1.52.22.8-1.7-1.70.9
Reaction time num false alarms AUC0.50.71.0-1.0-1.00.4
Reaction time trials correct on left0.20.40.5-0.6-0.60.7
Reaction time trials on left0.20.40.5-0.6-0.60.7
Reaction time mean1.22.02.51.61.6-0.9
Reaction time mean AUC1.01.62.11.51.5-0.8
Median of all reaction times1.21.72.31.51.5-0.7
Reaction time omissions0.60.90.90.90.9-0.9
Reaction time false alarm rate0.20.20.4-0.6-0.60.1
Reaction time premature initiation rate0.20.30.8-0.2-0.20.9
Reaction time premature initiations0.50.91.7-0.7-0.71.3
Std. dev. reaction times0.61.11.31.11.1-0.8
Reaction time trials completed0.20.40.5-0.6-0.60.7
Reaction time trials AUC0.20.40.4-0.6-0.60.6
Run reversals in cocaine runway, females4.84.85.6-2.4-2.41.7
Run reversals in cocaine runway, males0.30.30.7-0.2-0.2-0.9
Latency to leave start box in cocaine runway1.31.53.5-0.7-0.71.9
Latency to leave start box in cocaine runway, F3.03.54.9-1.7-1.72.2
Latency to leave start box in cocaine runway, M0.10.10.10.30.30.3
Std. dev. time between licks in bursts1.11.51.81.21.2-1.3
Total sessions with >9 infusions1.41.72.21.21.2-1.5
Short access day 1 total inactive lever presses0.20.20.6-0.1-0.10.8
Short access day 10 total inactive lever presses0.61.42.4-1.0-1.01.5
Short access day 1 total infusions0.10.10.2-0.2-0.20.4
Short access day 10 total infusions0.50.71.10.70.7-1.1
Short access total infusions0.91.21.21.11.1-1.1
Short access day 1 locomotion0.10.20.5-0.0-0.0-0.7
Short access day 10 total locomotion0.10.10.10.40.40.1
Short access total locomotion0.40.50.60.70.7-0.8
One hour access (0.3 mA shock)0.00.10.1-0.2-0.20.3
Compulsive drug intake0.30.40.50.70.7-0.1
One hour access (shock baseline)0.20.40.5-0.7-0.70.3
Social response proportion0.10.10.2-0.3-0.30.5
Social responses0.70.91.0-1.0-1.00.8
Social time0.50.61.4-0.5-0.51.2
Soleus weight0.31.01.21.01.0-1.1
Bone: stiffness1.93.13.4-1.8-1.81.6
Tibialis anterior weight3.311.312.53.33.3-3.5
Time to tail flick, vehicle, before self-admin1.51.61.9-1.2-1.21.4
Time to tail flick, vehicle, after self-admin1.31.71.9-1.4-1.41.2
Time to tail flick, test, before self-admin0.10.10.1-0.3-0.3-0.3
Time to tail flick, test, after self-admin2.02.12.4-1.5-1.51.2
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.7-0.70.2
Delta time to tail flick, test, before/after SA1.01.01.5-0.9-0.91.2
Tibia length0.61.72.8-1.1-1.11.7
Ambulatory time before self-admin0.10.10.10.30.30.4
Ambulatory time after self-admin2.12.53.0-1.5-1.51.7
Bone: tissue strength1.41.41.5-1.1-1.11.2
Total heroin consumption1.61.92.3-1.5-1.51.0
Bone: trabecular number0.00.00.00.20.2-0.1
Bone: trabecular spacing0.10.10.1-0.3-0.30.3
Bone: trabecular thickness0.20.30.3-0.6-0.60.5
Bone: trabecular tissue density0.20.40.40.60.6-0.6
Water consumed over 24 hours1.01.41.9-1.4-1.40.6
Number of responses in last shaping day0.70.82.00.50.5-1.4