LOC134481832

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XR_010057679.1 0.03 0.02 4.4e-04 0.03 0.02 0.02 0.02 1.1e-04 3.6e-03 1.1e-03 2.5e-03
2 Adipose alternative TSS XR_010057679.1 0.02 0.01 5.9e-03 0.02 0.01 0.01 0.02 1.9e-03 9.7e-03 1.1e-02 5.2e-03
3 Adipose alternative TSS XR_010057678.1 0.02 0.02 4.6e-03 0.02 0.01 0.02 0.02 2.5e-03 7.9e-03 4.8e-03 5.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.0-0.1-0.10.1
Area under the delay curve0.10.20.30.50.50.1
BMI with tail0.62.26.50.00.02.6
BMI without tail0.31.64.80.00.02.2
Body weight0.00.00.10.00.00.4
Weight adjusted by age0.41.31.3-1.2-1.21.0
Bone surface0.00.00.00.10.1-0.1
Bone volume0.30.70.70.80.8-0.9
Breakpoint value in progressive ratio session0.40.70.80.80.8-0.9
Number of licking bursts0.00.00.1-0.1-0.10.3
Context. condit. distance diff. score0.30.30.30.60.6-0.5
Locomotion velocity, session 10.91.01.1-1.0-1.01.0
Locomotion distance, session 10.50.61.30.50.5-1.1
Locomotion velocity, session 20.10.10.10.30.30.2
Locomotion distance, session 20.20.30.40.50.5-0.6
Locomotion velocity, session 30.30.40.90.30.3-0.9
Locomotion distance, session 30.00.00.1-0.2-0.2-0.1
Stereotopy head waving bouts, day 30.50.60.8-0.9-0.90.4
Stereotopy head waving duration, day 30.10.20.2-0.5-0.50.1
Locomotion velocity, session 72.73.03.31.81.8-1.5
Locomotion distance, session 71.92.43.31.81.8-0.7
Stereotopy head waving bouts, day 70.40.50.7-0.8-0.80.0
Stereotopy head waving duration, day 70.50.60.9-1.0-1.00.1
Locomotion velocity, session 80.00.10.1-0.3-0.3-0.1
Locomotion distance, session 80.81.21.41.11.1-1.2
Degree of sensitization distance2.72.93.92.02.0-1.0
Degree of sensitization stereotypy0.20.20.3-0.5-0.5-0.3
Conditioned locomotion1.01.22.1-0.9-0.91.4
Cocaine response after cond. corrected0.60.90.91.01.0-0.8
Cocaine response after cond. not corrected0.60.91.00.90.9-1.0
Cocaine response before conditioning0.10.20.2-0.5-0.50.0
Saline control response0.60.81.01.01.0-0.8
Bone: connectivity density0.20.40.4-0.7-0.70.5
Bone: cortical apparent density0.30.40.7-0.5-0.50.9
Bone: cortical area0.91.51.51.21.2-1.2
Bone: cortical porosity3.03.23.3-1.8-1.81.8
Bone: cortical porosity4.65.05.3-2.3-2.32.1
Bone: cortical thickness0.00.00.0-0.1-0.10.1
Bone: cortical thickness0.50.60.70.80.8-0.6
Bone: cortical tissue density0.40.61.0-0.7-0.71.0
Condit. Reinf. active minus inactive responses0.40.40.7-0.5-0.50.9
Condit. Reinf. active-inactive response ratio1.51.62.1-1.1-1.11.5
Condit. Reinf. active responses0.00.00.1-0.1-0.10.3
Condit. Reinf. inactive responses0.60.81.30.70.7-1.2
Incentive salience index mean0.00.10.20.00.00.4
Condit. Reinf. lever presses0.10.20.4-0.2-0.20.6
Condit. Reinf. active minus inactive responses0.20.30.4-0.6-0.60.5
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.1-0.2
Condit. Reinf. active responses0.10.10.2-0.2-0.20.5
Condit. Reinf. inactive responses0.20.40.50.70.70.1
Condit. Reinf. lever presses0.20.20.30.60.6-0.3
Condit. Reinf. lever reinforcers received0.10.10.2-0.2-0.20.4
Conditioned reinforcement - actives0.10.50.60.80.80.4
Conditioned reinforcement - inactives0.00.10.40.10.1-0.6
Conditioned locomotion1.01.52.01.41.4-0.5
Patch foraging indifference point 0 sec0.00.00.1-0.1-0.1-0.3
Patch foraging indifference point AUC1.94.55.32.32.3-1.7
Delay disc. indifference point, 0s delay0.10.10.4-0.1-0.10.6
Delay disc. indifference point, 16s delay0.20.30.3-0.5-0.50.6
Delay disc. indifference point, 2s delay3.54.05.32.32.3-1.1
Delay disc. indifference point, 24s delay0.00.00.10.10.10.3
Delay disc. indifference point, 4s delay0.30.30.40.70.7-0.2
Delay disc. indifference point, 8s delay0.20.41.1-0.2-0.21.1
Indifference point function ln k0.72.12.8-1.7-1.70.9
Indifference point function log k0.72.12.8-1.7-1.70.9
Patch foraging total patch changes 0 sec0.00.10.20.10.1-0.4
Patch foraging total patch changes 12 sec2.02.73.51.91.9-1.1
Patch foraging total patch changes 18 sec0.00.00.10.00.0-0.3
Patch foraging total patch changes 24 sec0.41.52.01.41.4-0.8
Patch foraging total patch changes 6 sec1.22.02.11.41.4-1.4
Patch foraging time to switch 0 sec1.76.57.6-2.8-2.82.1
Patch foraging water rate 0 sec1.45.25.92.42.4-1.9
Patch foraging water rate 12 sec0.41.72.51.61.6-0.5
Patch foraging water rate 18 sec2.04.55.12.32.3-1.8
Patch foraging water rate 24 sec1.72.43.11.81.8-0.9
Patch foraging water rate 6 sec2.33.44.32.12.1-1.3
Seeking ratio, delayed vs. immediate footshock0.10.10.20.10.1-0.5
Distance traveled before self-admin0.10.30.4-0.6-0.6-0.1
Distance traveled after self-admin1.52.72.81.61.6-1.7
Extensor digitorum longus weight10.943.647.6-6.5-6.56.9
Bone: elastic displacement0.20.20.3-0.5-0.50.4
Bone: elastic work0.60.70.8-0.9-0.90.8
Bone: endosteal estimation1.22.83.01.71.7-1.6
Bone: endosteal perimeter0.20.50.50.70.7-0.7
Epididymis fat weight0.00.10.30.00.00.5
Delta time in closed arm before/after self-admin0.40.30.5-0.5-0.50.7
Delta time in open arm before/after self-admin0.10.10.20.10.1-0.5
Diff in mean of infusions in LGA sessions0.20.41.20.00.0-1.1
Delay discount exponential model param0.20.30.5-0.7-0.70.0
Extinction: sum of active levers before priming0.10.20.3-0.5-0.5-0.0
Active lever presses in extinction session 61.01.01.90.80.8-1.4
Bone: final force0.20.30.30.60.6-0.5
Bone: final moment0.30.40.50.70.7-0.6
Food consumed during 24 hour testing period0.61.21.71.31.3-0.1
Glucose0.30.41.30.00.0-1.1
Heart weight0.00.00.00.00.0-0.1
Delay discount hyperbolic model param0.50.71.0-1.0-1.00.2
Intermittent access intake day 1-15 change0.10.50.8-0.5-0.50.9
Intermittent access intake escalation0.10.70.8-0.8-0.80.9
Intermittent access intake escalation 20.10.10.30.10.1-0.5
Intermitt. access day 1 inactive lever presses0.11.92.01.41.4-1.2
Intermitt. access day 15 inactive lever presses0.84.14.32.12.1-1.9
Intermitt. access escalation Index0.51.51.8-1.4-1.40.8
Intermittent access day 1 total infusions0.00.00.00.20.20.0
Intermittent access day 15 total infusions0.00.00.00.10.1-0.0
Intermittent access terminal intake (last 3 days)0.40.70.90.80.8-0.9
Intermittent access total infusions0.10.10.20.20.2-0.5
Intermittent access day 1 locomotion0.40.71.01.01.0-0.4
Intermittent access day 15 total locomotion0.31.01.21.11.1-0.8
Intermittent access total locomotion0.30.30.50.70.7-0.2
Intermittent access standard deviation0.10.50.50.70.7-0.7
Left kidney weight0.00.20.60.00.0-0.8
Right kidney weight0.10.72.10.00.0-1.4
Cocaine induced anxiety0.00.00.0-0.1-0.10.2
Post-drug Anxiety0.00.00.0-0.1-0.1-0.1
Baseline Anxiety0.00.10.1-0.3-0.3-0.2
Tail length0.21.03.00.00.0-1.7
Length with tail0.42.05.90.00.0-2.4
Length without tail0.10.72.20.00.0-1.5
Times rat made contact with spout0.10.10.20.40.40.2
Lifetime Intake0.10.10.1-0.4-0.40.2
Liver weight, left0.10.10.40.00.0-0.7
Liver weight, right0.10.30.80.00.0-0.9
Locomotor activity1.42.22.31.51.5-1.4
Locomotor testing distance0.20.51.10.50.5-1.1
Locomotor testing rearing0.10.30.80.20.2-0.9
Locomotion in novel chamber0.00.10.1-0.1-0.1-0.4
Locomotion in novel chamber post-restriction0.20.61.70.30.3-1.3
Fecal boli incidents, locomotor time 10.71.72.6-1.6-1.60.1
Change in fecal boli incidents, locomotor task1.41.51.6-1.2-1.21.3
Time >=10cm from walls, locomotor time 12.53.14.2-2.0-2.01.0
Bouts of movement, locomotor time 11.21.52.3-1.5-1.5-0.1
Total resting periods, locomotor time 11.01.11.7-1.3-1.3-0.1
Rest time, locomotor task time 10.30.61.70.00.0-1.3
Distance moved, locomotor task time 10.20.51.30.20.21.2
Vertical activity count, locomotor time 10.21.21.81.31.30.1
Time >=10cm from walls, locomotor time 20.61.62.0-1.4-1.41.0
Bouts of movement, locomotor time 20.00.00.10.10.1-0.3
Total resting periods, locomotor time 20.00.00.00.10.1-0.1
Rest time, locomotor task time 20.00.00.10.10.1-0.3
Distance moved, locomotor task time 20.50.72.0-0.1-0.11.4
Vertical activity count, locomotor time 20.20.50.70.90.90.1
Light reinforcement 10.62.52.71.61.6-1.6
Light reinforcement 20.10.10.1-0.3-0.3-0.4
Bone: marrow area1.12.72.81.71.7-1.5
Bone: maximum diameter0.20.30.30.60.6-0.5
Bone: maximum force0.61.11.21.11.1-0.9
Bone: maximum moment0.81.41.61.31.3-1.0
Mean time between licks in bursts0.74.15.1-2.3-2.31.4
Mean num. licks in bursts0.10.30.30.60.6-0.4
Cd content in liver4.24.64.7-2.1-2.12.2
Co content in liver0.10.20.3-0.5-0.50.0
Cu content in liver0.20.20.40.60.6-0.2
Fe content in liver0.20.20.6-0.1-0.10.8
K content in liver0.20.20.30.50.5-0.0
Mg content in liver0.00.00.00.20.2-0.1
Mn content in liver0.10.10.3-0.3-0.30.5
Na content in liver0.30.30.30.60.6-0.5
Rb content in liver1.21.41.4-1.2-1.21.2
Se content in liver0.00.00.10.10.1-0.4
Sr content in liver0.00.00.10.00.0-0.2
Zn content in liver0.50.50.7-0.7-0.70.8
Bone: minimum diameter7.113.614.03.73.7-3.7
Time in familiar zone, hab. session 10.10.10.10.40.40.1
Time in novel zone, hab. session 10.20.20.3-0.5-0.50.3
Total zone transitions, hab. session 10.10.10.10.40.4-0.3
Total locomotion distance, hab. session 10.91.21.31.11.1-1.1
Locomotion velocity, hab. session 10.60.91.10.90.9-1.0
Time in familiar zone, hab. session 20.30.30.4-0.6-0.60.6
Time in novel zone, hab. session 20.50.50.60.80.8-0.6
Total zone transitions, hab. session 20.10.10.3-0.1-0.1-0.6
Total locomotion distance, hab. session 20.50.61.30.50.5-1.1
Locomotion velocity, hab. session 20.30.40.90.40.4-1.0
Novel to familiar place preference ratio0.10.10.10.30.30.4
Novelty place preference0.10.10.40.10.10.6
Time in novel zone, NPP test0.10.10.10.30.30.4
Total zone transitions, NPP test0.00.00.00.00.0-0.1
Total locomotion distance, NPP test0.00.00.10.10.1-0.3
Locomotion velocity, NPP test0.00.00.1-0.2-0.20.1
Intraocular pressure0.40.60.9-0.9-0.90.2
Delta distance traveled before/after self-admin3.13.54.82.22.2-0.9
Delta ambulatory time before/after self-admin1.01.72.51.61.6-0.5
Parametrial fat weight0.10.20.60.00.0-0.8
Pavlov. Cond. lever latency1.82.32.8-1.7-1.71.2
Pavlov. Cond. magazine entry latency0.10.10.3-0.1-0.10.6
Pavlov. Cond. change in total contacts0.40.40.60.80.8-0.4
Pavlov. Cond. index score0.40.50.80.90.9-0.3
Pavlov. Cond. latency score0.70.81.21.11.1-0.5
Pavlov. Cond. lever contacts2.02.42.81.71.7-1.3
Pavlov. Cond. magazine entry number0.10.10.1-0.2-0.2-0.3
Pavlov. Cond. intertrial magazine entries0.40.51.00.50.5-1.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.70.80.8-0.2
Pavlov. Cond. response bias0.30.30.50.70.7-0.1
Pavlov. Cond. lever latency1.01.31.91.01.0-1.4
Pavlov. Cond. magazine entry latency1.92.73.2-1.8-1.81.3
Pavlov. Cond. change in total contacts0.61.41.5-1.2-1.21.0
Pavlov. Cond. index score1.42.22.3-1.5-1.51.4
Pavlov. Cond. latency score1.62.52.8-1.7-1.71.4
Pavlov. Cond. lever contacts0.40.60.8-0.7-0.70.9
Pavlov. Cond. magazine entry number3.14.04.42.12.1-1.8
Pavlov. Cond. intertrial magazine entries1.43.03.31.81.8-1.6
Pavlov. Cond. lever-magazine prob. diff.1.42.22.3-1.5-1.51.4
Pavlov. Cond. response bias1.31.82.0-1.3-1.31.4
Time in closed arm before self-admin0.61.12.20.70.7-1.5
Time in closed arm after self-admin0.20.20.6-0.1-0.1-0.8
Time in open arm before self-admin0.60.71.60.50.51.3
Time in open arm after self-admin0.10.10.10.30.30.3
Bone: periosteal estimation1.12.72.91.71.7-1.6
Bone: periosteal perimeter0.50.90.91.01.0-0.9
Bone: post-yield work0.30.50.60.70.7-0.8
Progressive ratio test 1 active lever presses0.10.20.20.40.4-0.5
Progressive ratio test 1 breakpoint0.10.20.20.40.4-0.5
Progressive ratio test 1 inactive lever presses0.61.71.91.41.4-1.1
Progressive ratio test 2 active lever presses0.20.30.30.50.5-0.5
Progressive ratio test 2 breakpoint0.20.30.30.50.5-0.6
Progressive ratio test 2 inactive lever presses0.61.82.01.31.3-1.4
Incentive Sensitization - Responses0.10.20.3-0.5-0.50.1
Incentive Sensitization - Breakpoint0.10.20.2-0.5-0.50.1
Sum of active levers in priming session hrs 5-60.20.20.30.50.50.3
Progressive ratio0.00.00.0-0.2-0.20.1
Food seeking constrained by brief footshock0.30.40.6-0.6-0.60.8
Seeking ratio, punishment vs. effort0.10.30.40.60.6-0.2
Retroperitoneal fat weight0.00.00.10.00.0-0.2
Reaction time number correct0.10.40.50.60.6-0.7
Reaction time mean minus median0.21.42.0-1.1-1.11.4
Reaction time mean minus median AUC0.10.50.5-0.7-0.70.7
Reaction time num false alarms1.32.22.81.71.7-0.9
Reaction time num false alarms AUC0.30.71.01.01.0-0.4
Reaction time trials correct on left0.10.40.50.60.6-0.7
Reaction time trials on left0.10.40.50.60.6-0.7
Reaction time mean0.92.02.5-1.6-1.60.9
Reaction time mean AUC0.71.62.1-1.5-1.50.8
Median of all reaction times1.11.72.3-1.5-1.50.7
Reaction time omissions0.60.90.9-0.9-0.90.9
Reaction time false alarm rate0.20.20.40.60.6-0.1
Reaction time premature initiation rate0.20.30.80.20.2-0.9
Reaction time premature initiations0.30.91.70.70.7-1.3
Std. dev. reaction times0.31.11.3-1.1-1.10.8
Reaction time trials completed0.10.40.50.60.6-0.7
Reaction time trials AUC0.10.40.40.60.6-0.6
Run reversals in cocaine runway, females4.24.85.62.42.4-1.7
Run reversals in cocaine runway, males0.30.30.70.20.20.9
Latency to leave start box in cocaine runway1.11.53.50.70.7-1.9
Latency to leave start box in cocaine runway, F2.83.54.91.71.7-2.2
Latency to leave start box in cocaine runway, M0.10.10.1-0.3-0.3-0.3
Std. dev. time between licks in bursts0.81.51.8-1.2-1.21.3
Total sessions with >9 infusions1.41.72.2-1.2-1.21.5
Short access day 1 total inactive lever presses0.10.20.60.10.1-0.8
Short access day 10 total inactive lever presses0.21.42.41.01.0-1.5
Short access day 1 total infusions0.00.10.20.20.2-0.4
Short access day 10 total infusions0.40.71.1-0.7-0.71.1
Short access total infusions0.81.21.2-1.1-1.11.1
Short access day 1 locomotion0.10.20.50.00.00.7
Short access day 10 total locomotion0.00.10.1-0.4-0.4-0.1
Short access total locomotion0.30.50.6-0.7-0.70.8
One hour access (0.3 mA shock)0.00.10.10.20.2-0.3
Compulsive drug intake0.20.40.5-0.7-0.70.1
One hour access (shock baseline)0.10.40.50.70.7-0.3
Social response proportion0.10.10.20.30.3-0.5
Social responses0.70.91.01.01.0-0.8
Social time0.40.61.40.50.5-1.2
Soleus weight0.31.01.2-1.0-1.01.1
Bone: stiffness1.73.13.41.81.8-1.6
Tibialis anterior weight3.311.312.5-3.3-3.33.5
Time to tail flick, vehicle, before self-admin1.31.61.91.21.2-1.4
Time to tail flick, vehicle, after self-admin0.91.71.91.41.4-1.2
Time to tail flick, test, before self-admin0.10.10.10.30.30.3
Time to tail flick, test, after self-admin2.02.12.41.51.5-1.2
Delta time to tail flick, vehicle, before/after SA0.30.40.50.70.7-0.2
Delta time to tail flick, test, before/after SA0.81.01.50.90.9-1.2
Tibia length0.61.72.81.11.1-1.7
Ambulatory time before self-admin0.00.10.1-0.3-0.3-0.4
Ambulatory time after self-admin1.62.53.01.51.5-1.7
Bone: tissue strength1.31.41.51.11.1-1.2
Total heroin consumption1.61.92.31.51.5-1.0
Bone: trabecular number0.00.00.0-0.2-0.20.1
Bone: trabecular spacing0.10.10.10.30.3-0.3
Bone: trabecular thickness0.20.30.30.60.6-0.5
Bone: trabecular tissue density0.20.40.4-0.6-0.60.6
Water consumed over 24 hours0.71.41.91.41.4-0.6
Number of responses in last shaping day0.60.82.0-0.5-0.51.4