LOC134481241

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC134481241 0.03 0.02 4.0e-03 0.02 0.02 0.01 0.02 4.4e-03 1.2e-02 1.8e-02 1.2e-02
2 BLA gene expression LOC134481241 0.14 0.09 5.9e-05 0.05 0.05 0.06 0.04 1.1e-03 7.9e-04 3.8e-04 5.5e-03
3 Adipose gene expression LOC134481241 0.17 0.05 4.1e-12 0.04 0.08 0.08 0.08 2.1e-05 2.1e-09 3.3e-09 2.2e-09
4 PL gene expression LOC134481241 0.05 0.03 2.2e-04 0.02 0.03 0.04 0.03 1.0e-03 1.3e-04 3.5e-05 5.9e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.56.4-2.5-1.7-0.7-0.5
Area under the delay curve0.50.62.01.40.2-0.20.4
BMI with tail0.20.71.0-1.0-0.50.81.0
BMI without tail0.82.56.5-2.5-1.9-0.20.0
Body weight3.816.839.9-6.3-4.9-1.6-1.0
Weight adjusted by age0.50.81.4-1.2-0.8-0.6-0.8
Bone surface1.52.77.6-2.7-1.7-0.5-0.2
Bone volume0.40.72.1-1.5-0.60.30.5
Breakpoint value in progressive ratio session0.10.10.2-0.3-0.4-0.4-0.2
Number of licking bursts0.10.20.2-0.2-0.5-0.4-0.4
Context. condit. distance diff. score2.42.94.7-2.2-2.0-1.3-1.2
Locomotion velocity, session 10.10.20.40.70.40.10.0
Locomotion distance, session 10.50.71.81.30.90.20.1
Locomotion velocity, session 20.20.20.70.90.3-0.0-0.0
Locomotion distance, session 20.50.71.71.30.3-0.7-0.8
Locomotion velocity, session 30.20.20.3-0.4-0.5-0.5-0.5
Locomotion distance, session 30.20.20.4-0.2-0.4-0.6-0.5
Stereotopy head waving bouts, day 31.21.43.2-1.8-1.2-0.7-0.6
Stereotopy head waving duration, day 30.10.20.20.20.50.50.4
Locomotion velocity, session 71.71.92.21.31.51.41.4
Locomotion distance, session 70.20.20.60.80.30.30.2
Stereotopy head waving bouts, day 70.30.30.70.2-0.1-0.6-0.8
Stereotopy head waving duration, day 70.10.10.20.40.4-0.1-0.3
Locomotion velocity, session 80.00.00.0-0.2-0.2-0.1-0.1
Locomotion distance, session 80.60.81.1-1.0-1.1-0.8-0.7
Degree of sensitization distance1.01.11.21.11.01.10.9
Degree of sensitization stereotypy0.10.10.30.60.2-0.2-0.4
Conditioned locomotion0.00.00.10.20.30.20.2
Cocaine response after cond. corrected1.51.83.30.21.11.61.8
Cocaine response after cond. not corrected1.01.22.10.20.91.31.5
Cocaine response before conditioning0.81.01.7-0.2-0.9-1.2-1.3
Saline control response7.810.311.6-3.0-3.4-3.3-3.2
Bone: connectivity density3.55.412.9-3.6-2.4-1.4-1.0
Bone: cortical apparent density1.01.41.80.91.21.31.2
Bone: cortical area0.40.50.9-0.8-0.9-0.5-0.7
Bone: cortical porosity0.20.20.3-0.1-0.4-0.5-0.4
Bone: cortical porosity0.10.10.20.2-0.1-0.5-0.4
Bone: cortical thickness0.30.61.4-1.2-0.8-0.4-0.4
Bone: cortical thickness1.21.42.7-1.7-1.2-0.9-0.8
Bone: cortical tissue density1.01.41.81.01.21.31.2
Condit. Reinf. active minus inactive responses0.70.71.11.00.90.70.7
Condit. Reinf. active-inactive response ratio0.40.50.60.40.80.70.8
Condit. Reinf. active responses0.20.20.70.90.2-0.3-0.3
Condit. Reinf. inactive responses0.60.71.00.9-0.2-0.9-1.0
Incentive salience index mean0.30.41.21.10.50.1-0.1
Condit. Reinf. lever presses0.50.62.11.40.4-0.2-0.6
Condit. Reinf. active minus inactive responses1.41.82.9-1.7-1.5-1.2-0.9
Condit. Reinf. active-inactive response ratio0.20.30.7-0.8-0.5-0.4-0.1
Condit. Reinf. active responses1.72.43.2-1.5-1.8-1.5-1.4
Condit. Reinf. inactive responses1.11.41.8-0.8-1.4-1.2-1.3
Condit. Reinf. lever presses0.00.10.20.1-0.4-0.2-0.2
Condit. Reinf. lever reinforcers received1.21.62.2-1.0-1.5-1.3-1.2
Conditioned reinforcement - actives2.23.74.7-2.2-2.1-1.7-1.7
Conditioned reinforcement - inactives0.40.61.0-0.8-0.7-0.6-1.0
Conditioned locomotion3.44.45.8-2.2-2.4-1.8-1.8
Patch foraging indifference point 0 sec0.00.00.1-0.1-0.2-0.2-0.3
Patch foraging indifference point AUC0.81.21.7-1.1-1.3-1.0-0.9
Delay disc. indifference point, 0s delay2.02.24.80.01.11.72.2
Delay disc. indifference point, 16s delay0.60.61.30.8-0.5-1.1-0.6
Delay disc. indifference point, 2s delay1.51.72.41.51.01.01.5
Delay disc. indifference point, 24s delay0.30.31.01.00.3-0.10.2
Delay disc. indifference point, 4s delay1.81.92.61.51.11.21.6
Delay disc. indifference point, 8s delay0.60.71.21.0-0.4-1.1-0.7
Indifference point function ln k0.71.31.9-0.9-0.9-1.2-1.4
Indifference point function log k0.71.31.9-0.9-0.9-1.2-1.4
Patch foraging total patch changes 0 sec0.10.10.2-0.1-0.3-0.5-0.5
Patch foraging total patch changes 12 sec0.00.00.1-0.0-0.3-0.00.0
Patch foraging total patch changes 18 sec0.10.20.4-0.0-0.5-0.6-0.5
Patch foraging total patch changes 24 sec0.91.52.6-0.1-1.2-1.5-1.6
Patch foraging total patch changes 6 sec0.30.40.7-0.3-0.8-0.7-0.7
Patch foraging time to switch 0 sec6.713.718.02.43.64.24.2
Patch foraging water rate 0 sec6.112.914.5-3.2-3.6-3.8-3.7
Patch foraging water rate 12 sec1.43.04.0-1.2-1.6-2.0-2.0
Patch foraging water rate 18 sec0.71.12.3-0.1-0.8-1.2-1.5
Patch foraging water rate 24 sec3.95.45.9-2.2-2.4-2.3-2.4
Patch foraging water rate 6 sec1.82.73.0-1.3-1.7-1.7-1.7
Seeking ratio, delayed vs. immediate footshock2.12.53.21.81.71.51.2
Distance traveled before self-admin0.20.20.30.10.60.40.6
Distance traveled after self-admin0.30.40.7-0.1-0.3-0.8-0.8
Extensor digitorum longus weight3.011.818.9-4.3-4.0-2.6-2.4
Bone: elastic displacement0.91.11.3-0.8-1.0-1.1-1.1
Bone: elastic work3.44.45.7-2.3-2.4-1.9-1.8
Bone: endosteal estimation0.81.72.4-1.0-1.6-1.3-1.3
Bone: endosteal perimeter1.02.23.4-0.5-1.6-1.6-1.8
Epididymis fat weight0.00.10.30.50.00.20.2
Delta time in closed arm before/after self-admin0.30.30.6-0.4-0.8-0.7-0.3
Delta time in open arm before/after self-admin1.91.93.31.41.81.11.2
Diff in mean of infusions in LGA sessions0.50.60.8-0.7-0.8-0.9-0.8
Delay discount exponential model param0.60.72.7-1.6-0.20.4-0.2
Extinction: sum of active levers before priming0.10.10.40.60.2-0.30.0
Active lever presses in extinction session 60.30.30.4-0.7-0.6-0.3-0.4
Bone: final force0.60.91.5-1.2-1.2-0.6-0.6
Bone: final moment0.40.71.2-1.0-1.1-0.5-0.6
Food consumed during 24 hour testing period0.10.10.20.2-0.4-0.5-0.3
Glucose1.93.03.71.71.91.71.6
Heart weight1.62.53.0-1.4-1.4-1.7-1.7
Delay discount hyperbolic model param0.60.72.4-1.6-0.20.2-0.4
Intermittent access intake day 1-15 change0.61.22.0-1.4-1.0-0.7-1.2
Intermittent access intake escalation0.40.91.4-1.2-0.9-0.6-1.0
Intermittent access intake escalation 20.00.00.1-0.30.10.1-0.2
Intermitt. access day 1 inactive lever presses0.10.30.6-0.5-0.3-0.6-0.8
Intermitt. access day 15 inactive lever presses1.42.94.80.81.62.21.9
Intermitt. access escalation Index0.20.30.70.1-0.5-0.8-0.5
Intermittent access day 1 total infusions0.20.30.60.7-0.3-0.6-0.4
Intermittent access day 15 total infusions0.50.71.2-0.1-0.9-0.9-1.1
Intermittent access terminal intake (last 3 days)0.10.20.30.2-0.5-0.4-0.6
Intermittent access total infusions0.10.10.30.5-0.1-0.10.0
Intermittent access day 1 locomotion0.10.20.70.8-0.0-0.3-0.1
Intermittent access day 15 total locomotion1.12.02.7-0.8-1.5-1.5-1.7
Intermittent access total locomotion0.20.30.40.5-0.5-0.6-0.5
Intermittent access standard deviation0.30.71.5-0.40.81.20.7
Left kidney weight4.520.940.9-6.4-5.4-2.9-2.4
Right kidney weight2.812.729.7-5.5-4.1-1.7-1.2
Cocaine induced anxiety0.10.10.30.60.00.30.4
Post-drug Anxiety7.07.59.82.62.32.93.1
Baseline Anxiety6.98.010.22.32.73.03.2
Tail length4.417.033.0-5.7-4.9-2.6-2.1
Length with tail8.938.572.5-8.5-7.4-4.1-3.3
Length without tail4.715.030.1-5.5-4.6-2.4-1.8
Times rat made contact with spout0.10.10.2-0.3-0.4-0.5-0.3
Lifetime Intake0.20.20.50.70.30.20.4
Liver weight, left2.13.55.0-2.2-2.1-1.6-1.5
Liver weight, right1.01.83.1-1.8-1.7-0.9-0.7
Locomotor activity5.68.810.7-2.2-3.0-3.2-3.3
Locomotor testing distance3.05.36.7-1.8-2.3-2.6-2.5
Locomotor testing rearing0.51.11.6-0.7-0.8-1.3-1.2
Locomotion in novel chamber2.73.54.5-1.5-2.1-1.9-1.9
Locomotion in novel chamber post-restriction3.65.87.8-1.8-2.8-2.5-2.5
Fecal boli incidents, locomotor time 11.42.03.2-1.8-1.5-1.1-1.1
Change in fecal boli incidents, locomotor task0.40.40.50.60.60.70.7
Time >=10cm from walls, locomotor time 12.62.83.31.81.81.41.6
Bouts of movement, locomotor time 11.92.13.4-0.5-1.9-1.6-1.6
Total resting periods, locomotor time 11.71.93.3-0.4-1.8-1.5-1.5
Rest time, locomotor task time 10.80.92.0-0.9-1.4-0.7-0.7
Distance moved, locomotor task time 10.10.10.40.60.40.10.0
Vertical activity count, locomotor time 10.40.91.50.0-0.9-1.2-1.2
Time >=10cm from walls, locomotor time 21.01.42.80.10.91.51.7
Bouts of movement, locomotor time 21.01.62.3-1.1-1.5-1.3-1.2
Total resting periods, locomotor time 20.71.21.7-1.0-1.3-1.0-1.0
Rest time, locomotor task time 20.00.00.10.00.20.20.3
Distance moved, locomotor task time 20.00.00.1-0.1-0.00.1-0.2
Vertical activity count, locomotor time 21.82.43.1-1.5-1.5-1.4-1.8
Light reinforcement 10.71.73.21.81.41.10.7
Light reinforcement 20.20.40.50.60.60.70.5
Bone: marrow area0.81.62.3-0.9-1.5-1.3-1.3
Bone: maximum diameter0.50.91.4-0.7-1.2-0.7-1.0
Bone: maximum force0.71.21.9-1.2-1.4-0.9-0.9
Bone: maximum moment0.61.11.7-1.1-1.3-0.9-0.9
Mean time between licks in bursts0.10.41.21.10.3-0.1-0.3
Mean num. licks in bursts0.00.00.0-0.10.10.10.2
Cd content in liver2.52.84.7-0.5-1.2-2.2-2.2
Co content in liver2.83.23.7-1.9-1.7-1.8-1.6
Cu content in liver0.30.30.40.30.60.60.6
Fe content in liver0.60.70.9-0.6-0.9-0.9-1.0
K content in liver0.30.30.50.20.50.70.7
Mg content in liver0.10.10.1-0.3-0.30.00.1
Mn content in liver0.20.20.40.60.50.40.3
Na content in liver0.10.10.2-0.5-0.40.20.0
Rb content in liver2.32.65.92.41.61.10.9
Se content in liver0.30.30.6-0.50.00.70.8
Sr content in liver0.50.50.8-0.1-0.8-0.7-0.9
Zn content in liver4.04.46.0-2.4-2.4-1.7-1.6
Bone: minimum diameter0.20.31.11.10.2-0.2-0.4
Time in familiar zone, hab. session 11.11.11.40.71.11.21.1
Time in novel zone, hab. session 10.30.30.7-0.8-0.6-0.4-0.3
Total zone transitions, hab. session 10.60.82.61.60.80.0-0.2
Total locomotion distance, hab. session 10.50.71.01.01.00.60.7
Locomotion velocity, hab. session 10.91.32.61.61.30.60.6
Time in familiar zone, hab. session 20.60.61.10.20.61.01.1
Time in novel zone, hab. session 20.30.30.60.4-0.2-0.6-0.8
Total zone transitions, hab. session 20.30.40.70.0-0.5-0.7-0.8
Total locomotion distance, hab. session 20.10.10.30.50.2-0.1-0.2
Locomotion velocity, hab. session 20.10.10.30.50.2-0.1-0.2
Novel to familiar place preference ratio0.00.00.0-0.10.1-0.10.0
Novelty place preference0.10.10.20.30.50.10.2
Time in novel zone, NPP test0.10.10.20.10.40.10.2
Total zone transitions, NPP test0.10.10.20.3-0.1-0.2-0.5
Total locomotion distance, NPP test0.10.20.50.70.40.30.2
Locomotion velocity, NPP test0.10.10.20.4-0.1-0.4-0.5
Intraocular pressure1.21.72.6-1.4-1.6-1.0-1.0
Delta distance traveled before/after self-admin0.90.91.7-0.1-0.8-1.2-1.3
Delta ambulatory time before/after self-admin0.20.20.40.50.1-0.5-0.7
Parametrial fat weight0.71.73.3-0.41.01.51.8
Pavlov. Cond. lever latency2.02.66.0-2.5-1.6-1.0-0.8
Pavlov. Cond. magazine entry latency0.30.40.6-0.4-0.8-0.6-0.8
Pavlov. Cond. change in total contacts1.92.02.51.61.41.31.3
Pavlov. Cond. index score0.20.20.60.80.40.30.1
Pavlov. Cond. latency score0.50.61.51.20.70.50.3
Pavlov. Cond. lever contacts2.12.55.32.31.61.10.9
Pavlov. Cond. magazine entry number0.40.50.70.30.70.70.9
Pavlov. Cond. intertrial magazine entries0.10.10.40.60.3-0.3-0.2
Pavlov. Cond. lever-magazine prob. diff.0.30.30.70.80.50.50.4
Pavlov. Cond. response bias0.10.10.10.2-0.3-0.2-0.4
Pavlov. Cond. lever latency0.30.30.9-0.9-0.5-0.4-0.3
Pavlov. Cond. magazine entry latency1.92.33.51.91.71.21.2
Pavlov. Cond. change in total contacts0.10.10.20.5-0.2-0.3-0.2
Pavlov. Cond. index score0.71.02.61.60.90.50.4
Pavlov. Cond. latency score0.70.92.21.50.90.60.6
Pavlov. Cond. lever contacts0.30.41.11.10.50.40.3
Pavlov. Cond. magazine entry number0.81.02.0-1.4-1.1-0.6-0.7
Pavlov. Cond. intertrial magazine entries1.11.72.4-0.8-1.3-1.4-1.6
Pavlov. Cond. lever-magazine prob. diff.0.71.02.71.60.90.50.4
Pavlov. Cond. response bias0.50.71.81.40.80.50.4
Time in closed arm before self-admin2.93.84.3-1.9-2.0-1.8-2.1
Time in closed arm after self-admin5.25.56.5-2.0-2.6-2.4-2.3
Time in open arm before self-admin0.10.10.20.1-0.4-0.4-0.1
Time in open arm after self-admin1.41.62.21.11.51.21.3
Bone: periosteal estimation0.71.52.2-1.0-1.5-1.1-1.2
Bone: periosteal perimeter0.71.22.2-0.1-1.1-1.3-1.5
Bone: post-yield work0.50.70.9-0.8-0.9-0.8-0.8
Progressive ratio test 1 active lever presses1.01.21.6-1.3-1.3-1.0-0.8
Progressive ratio test 1 breakpoint1.01.21.6-1.2-1.3-1.0-0.8
Progressive ratio test 1 inactive lever presses1.42.02.3-1.3-1.4-1.5-1.5
Progressive ratio test 2 active lever presses2.22.63.4-1.2-1.9-1.6-1.7
Progressive ratio test 2 breakpoint2.22.53.3-1.1-1.8-1.7-1.7
Progressive ratio test 2 inactive lever presses3.55.76.5-2.6-2.4-2.2-2.4
Incentive Sensitization - Responses0.10.20.30.2-0.5-0.4-0.6
Incentive Sensitization - Breakpoint0.20.20.40.2-0.5-0.4-0.6
Sum of active levers in priming session hrs 5-60.50.51.00.20.50.71.0
Progressive ratio1.52.43.11.01.51.71.8
Food seeking constrained by brief footshock1.61.92.61.61.61.40.8
Seeking ratio, punishment vs. effort1.01.42.3-0.6-1.2-1.3-1.5
Retroperitoneal fat weight0.83.45.11.11.72.12.3
Reaction time number correct1.52.83.6-1.3-1.7-1.8-1.9
Reaction time mean minus median0.00.10.30.50.30.0-0.1
Reaction time mean minus median AUC0.10.20.50.70.4-0.0-0.1
Reaction time num false alarms0.30.40.7-0.3-0.5-0.8-0.7
Reaction time num false alarms AUC0.30.50.7-0.6-0.6-0.9-0.7
Reaction time trials correct on left1.52.83.6-1.3-1.7-1.8-1.9
Reaction time trials on left1.42.73.4-1.2-1.7-1.7-1.8
Reaction time mean1.82.93.91.92.01.51.4
Reaction time mean AUC1.52.43.51.71.91.31.2
Median of all reaction times3.14.45.62.22.41.91.8
Reaction time omissions1.01.51.81.11.31.31.1
Reaction time false alarm rate0.00.00.0-0.00.2-0.10.1
Reaction time premature initiation rate0.10.10.20.20.30.40.4
Reaction time premature initiations0.10.20.2-0.3-0.5-0.4-0.4
Std. dev. reaction times0.61.11.81.31.20.90.7
Reaction time trials completed1.42.73.4-1.2-1.7-1.7-1.8
Reaction time trials AUC1.32.53.5-1.1-1.6-1.7-1.9
Run reversals in cocaine runway, females1.21.21.71.11.31.10.9
Run reversals in cocaine runway, males1.71.72.9-0.3-1.1-1.6-1.7
Latency to leave start box in cocaine runway0.70.81.40.30.81.01.2
Latency to leave start box in cocaine runway, F0.80.91.7-0.20.71.21.3
Latency to leave start box in cocaine runway, M0.10.10.20.40.2-0.1-0.0
Std. dev. time between licks in bursts0.70.91.0-0.8-1.0-1.0-1.0
Total sessions with >9 infusions0.80.91.20.41.01.11.1
Short access day 1 total inactive lever presses0.20.20.50.10.50.70.5
Short access day 10 total inactive lever presses0.20.51.6-1.3-0.10.60.3
Short access day 1 total infusions1.31.82.31.31.51.21.3
Short access day 10 total infusions0.30.40.70.80.70.40.5
Short access total infusions1.72.22.61.31.51.41.6
Short access day 1 locomotion0.10.20.60.80.2-0.10.2
Short access day 10 total locomotion0.00.00.00.00.20.1-0.1
Short access total locomotion0.81.01.21.11.10.91.0
One hour access (0.3 mA shock)5.26.09.6-1.3-2.3-2.7-3.1
Compulsive drug intake0.81.01.91.41.20.60.5
One hour access (shock baseline)2.94.45.4-1.7-2.3-2.2-2.2
Social response proportion2.73.15.1-2.2-2.0-1.4-1.1
Social responses3.74.75.3-2.0-2.3-2.2-2.1
Social time0.70.92.71.61.00.30.1
Soleus weight1.03.14.3-2.1-2.1-1.5-1.3
Bone: stiffness0.10.20.4-0.4-0.6-0.4-0.4
Tibialis anterior weight2.48.116.0-4.0-3.3-1.8-1.5
Time to tail flick, vehicle, before self-admin1.81.82.21.51.11.31.5
Time to tail flick, vehicle, after self-admin0.10.20.20.2-0.5-0.5-0.4
Time to tail flick, test, before self-admin1.11.21.6-1.3-1.1-1.0-0.9
Time to tail flick, test, after self-admin1.11.11.60.71.01.21.3
Delta time to tail flick, vehicle, before/after SA0.60.61.0-0.3-0.6-1.0-1.0
Delta time to tail flick, test, before/after SA2.02.02.41.61.41.41.2
Tibia length1.13.07.7-2.8-2.0-0.4-0.0
Ambulatory time before self-admin0.00.00.1-0.3-0.2-0.2-0.0
Ambulatory time after self-admin0.10.20.30.2-0.0-0.6-0.6
Bone: tissue strength0.20.20.3-0.5-0.4-0.3-0.2
Total heroin consumption0.70.82.91.70.6-0.20.0
Bone: trabecular number1.52.57.0-2.6-1.6-0.5-0.3
Bone: trabecular spacing2.12.86.42.51.71.00.8
Bone: trabecular thickness1.72.14.4-2.1-1.7-0.8-0.7
Bone: trabecular tissue density0.20.30.30.50.50.60.6
Water consumed over 24 hours1.31.82.3-1.3-1.5-1.3-1.1
Number of responses in last shaping day0.91.01.30.91.10.91.0