LOC134481239

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye alternative polyA XR_010056646.1 0.37 0.2 1.5e-03 0.17 0.16 0.14 0.18 1.5e-03 1.9e-03 3.5e-03 9.6e-04
2 Eye alternative polyA XR_010056647.1 0.38 0.2 1.0e-03 0.17 0.17 0.17 0.19 1.2e-03 1.3e-03 1.2e-03 7.8e-04
3 NAcc alternative polyA XR_010056647.1 0.03 0.03 5.2e-03 -0 0.01 0.01 0 4.1e-01 1.4e-02 5.0e-03 8.1e-02
4 NAcc alternative polyA XR_010056646.1 0.03 0.03 3.0e-03 0 0.01 0.01 0.01 1.0e-01 6.1e-03 1.9e-03 4.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.24.07.4-2.72.7-0.80.6
Area under the delay curve1.01.51.71.2-1.21.3-1.3
BMI with tail1.13.95.8-2.42.41.3-1.5
BMI without tail0.94.68.9-3.03.00.4-0.6
Body weight6.629.057.9-7.67.6-0.50.0
Weight adjusted by age0.20.70.9-0.90.9-0.70.7
Bone surface2.03.97.7-2.82.8-0.30.1
Bone volume0.91.83.5-1.91.90.3-0.4
Breakpoint value in progressive ratio session0.20.40.7-0.30.30.8-0.8
Number of licking bursts0.00.10.20.0-0.0-0.50.5
Context. condit. distance diff. score1.62.03.2-1.81.8-0.90.8
Locomotion velocity, session 10.20.30.50.7-0.7-0.10.2
Locomotion distance, session 11.21.53.11.8-1.80.10.1
Locomotion velocity, session 20.20.30.50.7-0.70.10.0
Locomotion distance, session 22.63.77.02.6-2.6-0.50.7
Locomotion velocity, session 30.30.40.5-0.50.5-0.70.7
Locomotion distance, session 30.10.10.30.1-0.1-0.50.5
Stereotopy head waving bouts, day 31.72.13.4-1.81.8-0.90.8
Stereotopy head waving duration, day 30.00.00.00.1-0.10.1-0.1
Locomotion velocity, session 71.21.32.00.8-0.81.4-1.4
Locomotion distance, session 70.50.70.91.0-1.00.7-0.6
Stereotopy head waving bouts, day 70.91.12.00.6-0.6-1.31.4
Stereotopy head waving duration, day 70.50.60.80.6-0.6-0.80.9
Locomotion velocity, session 80.10.10.2-0.40.4-0.20.1
Locomotion distance, session 80.10.10.2-0.40.4-0.20.2
Degree of sensitization distance1.51.61.91.2-1.21.4-1.3
Degree of sensitization stereotypy0.50.50.70.8-0.8-0.60.7
Conditioned locomotion0.10.10.2-0.50.5-0.10.0
Cocaine response after cond. corrected1.42.12.5-1.41.41.5-1.6
Cocaine response after cond. not corrected1.21.72.5-1.11.11.5-1.6
Cocaine response before conditioning0.40.50.60.7-0.7-0.70.8
Saline control response4.15.78.4-1.81.8-2.92.8
Bone: connectivity density4.36.812.2-3.53.5-1.31.1
Bone: cortical apparent density0.71.12.00.4-0.41.4-1.4
Bone: cortical area0.10.20.3-0.50.5-0.30.2
Bone: cortical porosity0.20.20.40.0-0.0-0.60.6
Bone: cortical porosity0.40.50.50.7-0.7-0.70.7
Bone: cortical thickness0.20.40.8-0.90.9-0.20.2
Bone: cortical thickness0.20.20.2-0.40.4-0.50.5
Bone: cortical tissue density0.71.12.00.5-0.51.4-1.4
Condit. Reinf. active minus inactive responses0.60.60.90.7-0.71.0-0.9
Condit. Reinf. active-inactive response ratio0.20.20.4-0.10.10.6-0.6
Condit. Reinf. active responses0.40.61.11.1-1.10.2-0.1
Condit. Reinf. inactive responses1.41.83.31.8-1.8-0.50.6
Incentive salience index mean0.60.81.61.3-1.30.3-0.2
Condit. Reinf. lever presses1.11.63.11.8-1.8-0.20.4
Condit. Reinf. active minus inactive responses0.61.01.6-1.31.3-0.60.6
Condit. Reinf. active-inactive response ratio0.20.30.6-0.80.8-0.10.1
Condit. Reinf. active responses0.60.91.0-1.01.0-0.90.9
Condit. Reinf. inactive responses0.30.50.9-0.30.3-0.90.9
Condit. Reinf. lever presses0.00.00.1-0.10.10.3-0.3
Condit. Reinf. lever reinforcers received0.30.40.6-0.40.4-0.80.7
Conditioned reinforcement - actives0.93.84.8-2.22.2-1.71.6
Conditioned reinforcement - inactives0.41.12.0-0.60.6-1.41.4
Conditioned locomotion1.52.22.8-1.71.7-1.31.2
Patch foraging indifference point 0 sec0.10.20.4-0.00.0-0.60.6
Patch foraging indifference point AUC0.20.61.0-1.01.0-0.50.4
Delay disc. indifference point, 0s delay2.73.05.5-0.90.92.2-2.3
Delay disc. indifference point, 16s delay0.30.40.60.8-0.80.4-0.4
Delay disc. indifference point, 2s delay3.03.45.01.3-1.32.2-2.2
Delay disc. indifference point, 24s delay0.40.61.01.0-1.00.5-0.4
Delay disc. indifference point, 4s delay2.02.23.11.1-1.11.8-1.7
Delay disc. indifference point, 8s delay0.30.51.01.0-1.00.1-0.0
Indifference point function ln k0.51.53.00.2-0.2-1.71.7
Indifference point function log k0.51.53.00.2-0.2-1.71.7
Patch foraging total patch changes 0 sec0.10.30.60.2-0.2-0.70.8
Patch foraging total patch changes 12 sec0.10.10.3-0.50.50.0-0.1
Patch foraging total patch changes 18 sec0.10.30.5-0.20.2-0.70.7
Patch foraging total patch changes 24 sec0.30.91.90.1-0.1-1.31.4
Patch foraging total patch changes 6 sec0.20.30.5-0.40.4-0.70.7
Patch foraging time to switch 0 sec1.97.415.00.3-0.33.8-3.9
Patch foraging water rate 0 sec2.28.214.7-1.31.3-3.83.8
Patch foraging water rate 12 sec0.83.36.5-0.30.3-2.52.6
Patch foraging water rate 18 sec0.71.52.30.9-0.9-1.41.5
Patch foraging water rate 24 sec2.23.15.7-0.80.8-2.42.3
Patch foraging water rate 6 sec1.42.14.1-0.40.4-2.02.0
Seeking ratio, delayed vs. immediate footshock0.60.81.11.0-1.00.7-0.7
Distance traveled before self-admin0.20.40.40.6-0.60.7-0.6
Distance traveled after self-admin0.30.50.80.6-0.6-0.80.9
Extensor digitorum longus weight2.18.413.1-3.63.6-2.01.8
Bone: elastic displacement0.40.40.7-0.40.4-0.90.9
Bone: elastic work2.02.63.6-1.91.9-1.31.2
Bone: endosteal estimation0.30.80.9-0.80.8-1.00.9
Bone: endosteal perimeter0.41.12.20.0-0.0-1.51.5
Epididymis fat weight0.00.10.10.3-0.30.3-0.3
Delta time in closed arm before/after self-admin0.30.30.5-0.70.7-0.20.1
Delta time in open arm before/after self-admin2.22.64.42.1-2.11.0-0.9
Diff in mean of infusions in LGA sessions0.10.20.3-0.30.3-0.50.5
Delay discount exponential model param1.52.02.6-1.61.6-1.31.2
Extinction: sum of active levers before priming0.20.30.40.6-0.60.4-0.4
Active lever presses in extinction session 60.10.10.1-0.20.2-0.30.3
Bone: final force0.81.22.4-1.51.5-0.30.2
Bone: final moment0.60.91.7-1.31.3-0.40.3
Food consumed during 24 hour testing period0.10.20.20.5-0.5-0.20.3
Glucose1.72.62.81.7-1.61.7-1.5
Heart weight1.22.03.90.0-0.0-2.02.0
Delay discount hyperbolic model param1.51.92.2-1.51.5-1.31.2
Intermittent access intake day 1-15 change0.42.23.0-1.21.2-1.71.7
Intermittent access intake escalation0.42.02.5-1.21.2-1.61.5
Intermittent access intake escalation 20.20.30.70.0-0.0-0.80.8
Intermitt. access day 1 inactive lever presses0.10.71.2-0.40.4-1.11.1
Intermitt. access day 15 inactive lever presses0.21.12.0-0.30.31.4-1.4
Intermitt. access escalation Index0.00.10.20.5-0.50.0-0.0
Intermittent access day 1 total infusions0.10.30.60.8-0.8-0.10.2
Intermittent access day 15 total infusions0.20.61.1-0.10.1-1.11.1
Intermittent access terminal intake (last 3 days)0.10.20.30.2-0.2-0.50.5
Intermittent access total infusions0.10.10.10.2-0.20.4-0.4
Intermittent access day 1 locomotion0.50.91.11.0-1.00.9-0.9
Intermittent access day 15 total locomotion0.20.91.9-0.10.1-1.41.4
Intermittent access total locomotion0.20.20.40.6-0.60.0-0.0
Intermittent access standard deviation0.10.30.5-0.70.70.4-0.4
Left kidney weight3.326.447.2-6.96.9-2.62.1
Right kidney weight3.020.740.0-6.36.3-1.40.9
Cocaine induced anxiety0.10.20.30.3-0.30.6-0.6
Post-drug Anxiety5.56.211.31.1-1.13.4-3.3
Baseline Anxiety2.84.79.00.7-0.73.0-3.0
Tail length3.116.931.2-5.65.6-1.81.4
Length with tail9.341.375.6-8.78.7-2.92.4
Length without tail3.719.336.6-6.16.0-1.61.2
Times rat made contact with spout0.30.30.5-0.40.4-0.70.7
Lifetime Intake0.30.30.60.3-0.30.7-0.7
Liver weight, left2.44.25.1-2.32.3-1.91.8
Liver weight, right1.32.34.4-2.12.1-0.40.3
Locomotor activity4.46.911.2-1.71.6-3.33.3
Locomotor testing distance1.84.47.5-1.21.2-2.72.7
Locomotor testing rearing0.20.71.4-0.30.3-1.21.2
Locomotion in novel chamber1.62.12.8-1.21.2-1.71.6
Locomotion in novel chamber post-restriction1.64.77.5-1.41.4-2.72.7
Fecal boli incidents, locomotor time 10.51.41.6-1.31.3-1.21.1
Change in fecal boli incidents, locomotor task0.30.30.60.3-0.30.8-0.8
Time >=10cm from walls, locomotor time 11.51.92.91.0-1.01.7-1.7
Bouts of movement, locomotor time 11.01.31.4-1.21.2-1.11.1
Total resting periods, locomotor time 11.11.31.4-1.21.2-1.11.0
Rest time, locomotor task time 10.91.52.5-1.61.6-0.70.6
Distance moved, locomotor task time 10.30.81.11.0-1.00.7-0.7
Vertical activity count, locomotor time 10.00.20.40.2-0.2-0.60.6
Time >=10cm from walls, locomotor time 20.41.11.2-1.11.11.0-1.1
Bouts of movement, locomotor time 20.31.01.2-0.90.9-1.11.0
Total resting periods, locomotor time 20.20.90.9-0.90.9-1.00.9
Rest time, locomotor task time 20.10.20.40.6-0.60.3-0.2
Distance moved, locomotor task time 20.20.30.4-0.60.6-0.30.3
Vertical activity count, locomotor time 21.43.33.5-1.81.8-1.91.8
Light reinforcement 10.41.93.31.8-1.80.7-0.6
Light reinforcement 20.10.20.30.3-0.30.5-0.5
Bone: marrow area0.30.70.9-0.80.8-1.00.9
Bone: maximum diameter0.10.30.3-0.50.5-0.50.5
Bone: maximum force0.40.71.2-1.11.1-0.40.3
Bone: maximum moment0.30.50.8-0.90.9-0.40.4
Mean time between licks in bursts0.10.71.51.2-1.20.1-0.1
Mean num. licks in bursts0.00.10.2-0.50.5-0.10.0
Cd content in liver2.73.05.21.0-1.0-2.22.3
Co content in liver1.51.82.1-1.31.3-1.51.4
Cu content in liver0.00.00.00.1-0.10.2-0.2
Fe content in liver0.10.10.20.1-0.1-0.50.5
K content in liver0.40.40.7-0.50.50.8-0.8
Mg content in liver0.20.20.3-0.50.50.3-0.3
Mn content in liver0.20.20.40.6-0.60.1-0.0
Na content in liver0.50.60.9-0.90.90.5-0.6
Rb content in liver2.32.74.52.1-2.11.0-0.9
Se content in liver0.70.91.5-1.21.20.5-0.6
Sr content in liver0.40.30.6-0.10.1-0.80.8
Zn content in liver3.54.15.9-2.42.4-1.61.4
Bone: minimum diameter0.40.71.41.2-1.2-0.10.2
Time in familiar zone, hab. session 10.30.40.80.2-0.20.8-0.9
Time in novel zone, hab. session 10.00.00.1-0.30.30.0-0.0
Total zone transitions, hab. session 12.23.16.22.5-2.50.20.0
Total locomotion distance, hab. session 11.41.93.01.7-1.71.0-0.9
Locomotion velocity, hab. session 11.52.13.92.0-2.00.6-0.5
Time in familiar zone, hab. session 20.40.50.5-0.60.60.7-0.7
Time in novel zone, hab. session 20.80.91.51.2-1.2-0.40.5
Total zone transitions, hab. session 20.20.20.30.5-0.5-0.30.3
Total locomotion distance, hab. session 20.60.81.71.3-1.30.2-0.2
Locomotion velocity, hab. session 20.70.91.81.3-1.30.4-0.3
Novel to familiar place preference ratio0.00.00.00.2-0.20.00.0
Novelty place preference0.10.20.30.6-0.60.1-0.1
Time in novel zone, NPP test0.00.00.10.3-0.30.1-0.0
Total zone transitions, NPP test0.30.40.90.9-0.9-0.10.2
Total locomotion distance, NPP test0.71.01.41.2-1.20.8-0.7
Locomotion velocity, NPP test0.60.91.81.3-1.30.2-0.1
Intraocular pressure0.61.01.5-1.21.2-0.80.7
Delta distance traveled before/after self-admin1.21.32.7-0.10.1-1.61.7
Delta ambulatory time before/after self-admin0.40.61.00.6-0.6-0.91.0
Parametrial fat weight0.81.92.7-1.11.11.5-1.6
Pavlov. Cond. lever latency2.43.05.7-2.42.4-0.70.5
Pavlov. Cond. magazine entry latency0.20.30.4-0.50.5-0.60.6
Pavlov. Cond. change in total contacts0.70.81.20.7-0.71.1-1.1
Pavlov. Cond. index score0.10.10.20.5-0.50.00.0
Pavlov. Cond. latency score0.40.50.91.0-1.00.2-0.2
Pavlov. Cond. lever contacts2.02.54.32.1-2.10.8-0.7
Pavlov. Cond. magazine entry number0.30.40.70.2-0.20.8-0.8
Pavlov. Cond. intertrial magazine entries0.60.81.51.2-1.2-0.10.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.3-0.30.3-0.2
Pavlov. Cond. response bias0.00.00.10.1-0.1-0.20.2
Pavlov. Cond. lever latency0.30.40.4-0.70.7-0.60.5
Pavlov. Cond. magazine entry latency1.31.92.51.6-1.61.2-1.1
Pavlov. Cond. change in total contacts0.10.10.30.5-0.50.2-0.1
Pavlov. Cond. index score0.71.21.81.4-1.40.7-0.7
Pavlov. Cond. latency score0.60.91.21.1-1.10.9-0.8
Pavlov. Cond. lever contacts0.40.60.90.9-0.90.6-0.5
Pavlov. Cond. magazine entry number0.91.11.7-1.31.3-0.80.7
Pavlov. Cond. intertrial magazine entries0.51.12.2-0.00.0-1.51.5
Pavlov. Cond. lever-magazine prob. diff.0.91.32.21.5-1.50.7-0.6
Pavlov. Cond. response bias0.81.11.91.4-1.40.6-0.5
Time in closed arm before self-admin1.12.03.3-0.80.8-1.81.8
Time in closed arm after self-admin2.32.64.4-1.01.0-2.12.0
Time in open arm before self-admin0.00.00.0-0.00.00.0-0.0
Time in open arm after self-admin1.92.12.21.4-1.41.5-1.4
Bone: periosteal estimation0.30.60.6-0.80.8-0.80.7
Bone: periosteal perimeter0.50.91.70.4-0.4-1.31.3
Bone: post-yield work0.10.10.20.1-0.1-0.50.5
Progressive ratio test 1 active lever presses0.61.01.8-1.41.4-0.40.4
Progressive ratio test 1 breakpoint0.61.01.8-1.31.3-0.40.3
Progressive ratio test 1 inactive lever presses0.82.13.2-0.90.9-1.81.8
Progressive ratio test 2 active lever presses1.42.02.6-1.21.2-1.61.5
Progressive ratio test 2 breakpoint1.51.92.6-1.11.1-1.61.5
Progressive ratio test 2 inactive lever presses1.44.55.9-1.81.8-2.42.4
Incentive Sensitization - Responses0.10.30.70.0-0.0-0.80.8
Incentive Sensitization - Breakpoint0.20.40.70.2-0.2-0.80.9
Sum of active levers in priming session hrs 5-61.11.01.9-0.50.51.3-1.4
Progressive ratio0.30.91.50.6-0.61.2-1.2
Food seeking constrained by brief footshock0.30.40.80.9-0.9-0.10.2
Seeking ratio, punishment vs. effort0.61.42.2-0.80.8-1.51.5
Retroperitoneal fat weight0.52.14.3-0.30.32.0-2.1
Reaction time number correct0.62.24.3-0.40.4-2.12.1
Reaction time mean minus median0.00.30.60.8-0.70.1-0.0
Reaction time mean minus median AUC0.11.01.81.4-1.4-0.20.3
Reaction time num false alarms0.30.61.00.5-0.5-1.01.0
Reaction time num false alarms AUC0.20.40.80.1-0.1-0.90.9
Reaction time trials correct on left0.62.24.3-0.40.4-2.12.1
Reaction time trials on left0.62.14.1-0.40.4-2.02.0
Reaction time mean0.92.02.91.7-1.71.1-1.0
Reaction time mean AUC0.71.72.81.7-1.70.8-0.7
Median of all reaction times1.62.53.11.8-1.81.4-1.3
Reaction time omissions0.50.91.10.8-0.81.1-1.0
Reaction time false alarm rate0.00.00.10.3-0.30.0-0.0
Reaction time premature initiation rate0.20.20.30.5-0.50.5-0.5
Reaction time premature initiations0.10.20.20.3-0.3-0.40.5
Std. dev. reaction times0.31.01.61.3-1.20.7-0.6
Reaction time trials completed0.62.14.1-0.40.4-2.02.0
Reaction time trials AUC0.62.24.6-0.10.1-2.12.1
Run reversals in cocaine runway, females0.60.71.11.0-1.00.6-0.5
Run reversals in cocaine runway, males1.51.73.20.5-0.5-1.71.8
Latency to leave start box in cocaine runway0.50.61.3-0.10.11.1-1.1
Latency to leave start box in cocaine runway, F0.60.80.9-0.90.90.8-0.8
Latency to leave start box in cocaine runway, M0.50.50.80.9-0.90.5-0.4
Std. dev. time between licks in bursts0.40.71.2-0.40.4-1.11.1
Total sessions with >9 infusions0.30.40.80.1-0.10.9-0.9
Short access day 1 total inactive lever presses0.10.20.5-0.70.7-0.10.1
Short access day 10 total inactive lever presses0.32.03.9-2.02.0-0.30.2
Short access day 1 total infusions0.61.11.70.8-0.81.3-1.3
Short access day 10 total infusions0.20.30.60.8-0.80.3-0.2
Short access total infusions1.11.62.90.6-0.61.7-1.7
Short access day 1 locomotion0.20.40.50.5-0.50.7-0.7
Short access day 10 total locomotion0.00.00.0-0.00.0-0.10.1
Short access total locomotion0.71.01.50.7-0.71.2-1.2
One hour access (0.3 mA shock)4.14.99.6-0.40.4-3.13.1
Compulsive drug intake1.01.53.01.7-1.70.2-0.1
One hour access (shock baseline)1.02.63.6-1.31.3-1.91.8
Social response proportion3.14.07.4-2.72.7-0.80.7
Social responses2.02.62.9-1.61.6-1.71.6
Social time1.62.54.82.2-2.20.4-0.2
Soleus weight0.72.02.2-1.51.5-1.41.3
Bone: stiffness0.00.10.2-0.40.4-0.10.1
Tibialis anterior weight2.910.119.0-4.44.4-1.31.0
Time to tail flick, vehicle, before self-admin1.31.63.20.4-0.41.7-1.8
Time to tail flick, vehicle, after self-admin0.00.00.0-0.10.1-0.00.0
Time to tail flick, test, before self-admin1.21.31.4-1.11.1-1.21.1
Time to tail flick, test, after self-admin0.30.30.3-0.50.50.5-0.6
Delta time to tail flick, vehicle, before/after SA0.50.50.90.5-0.5-0.90.9
Delta time to tail flick, test, before/after SA0.20.30.50.3-0.40.7-0.7
Tibia length3.69.919.8-4.44.40.2-0.5
Ambulatory time before self-admin0.00.10.20.4-0.40.3-0.3
Ambulatory time after self-admin0.30.40.50.7-0.7-0.60.7
Bone: tissue strength0.20.20.4-0.60.6-0.10.1
Total heroin consumption1.72.03.31.8-1.80.9-0.8
Bone: trabecular number2.44.68.7-3.03.0-0.70.5
Bone: trabecular spacing2.23.25.42.3-2.31.1-0.9
Bone: trabecular thickness1.72.44.5-2.12.1-0.60.4
Bone: trabecular tissue density0.20.40.8-0.10.10.9-0.9
Water consumed over 24 hours0.91.82.3-1.21.2-1.51.4
Number of responses in last shaping day0.30.40.60.4-0.40.8-0.8