LOC134481147

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134481147 0.05 0.06 6.1e-03 0.02 0.01 0.02 0.01 6.0e-03 8.2e-03 6.0e-03 8.5e-03
2 pVTA gene expression LOC134481147 0.05 0.03 3.6e-03 0.03 0.02 0.03 0.03 1.3e-03 5.6e-03 2.9e-03 2.0e-03
3 Brain gene expression LOC134481147 0.09 0.05 3.3e-07 0.06 0.09 0.08 0.08 1.7e-06 1.4e-08 3.8e-08 6.7e-08
4 IL gene expression LOC134481147 0.14 0.1 3.7e-03 0.13 0.11 0.1 0.1 5.1e-04 1.4e-03 2.3e-03 2.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density7.312.519.34.24.43.21.7
Area under the delay curve0.91.02.0-1.4-0.7-1.2-0.4
BMI with tail3.411.617.64.23.83.21.9
BMI without tail1.23.711.73.41.20.4-1.2
Body weight9.139.676.48.77.15.41.8
Weight adjusted by age0.50.81.31.01.1-0.1-0.9
Bone surface6.010.917.74.14.22.81.2
Bone volume6.712.118.63.84.33.32.1
Breakpoint value in progressive ratio session0.20.20.40.2-0.5-0.4-0.6
Number of licking bursts0.40.60.9-0.70.90.5-0.9
Context. condit. distance diff. score2.93.58.83.01.41.41.1
Locomotion velocity, session 11.31.42.5-0.6-1.6-1.5-0.7
Locomotion distance, session 11.62.04.2-1.1-1.0-2.0-1.3
Locomotion velocity, session 21.21.41.9-1.2-0.9-1.3-1.4
Locomotion distance, session 22.33.24.5-1.9-1.0-2.1-2.0
Locomotion velocity, session 30.50.60.70.70.80.90.7
Locomotion distance, session 30.20.20.50.30.1-0.5-0.7
Stereotopy head waving bouts, day 31.01.12.01.40.3-0.7-1.3
Stereotopy head waving duration, day 30.00.10.2-0.0-0.0-0.5-0.2
Locomotion velocity, session 70.30.31.0-1.0-0.1-0.30.4
Locomotion distance, session 70.10.20.3-0.5-0.3-0.40.4
Stereotopy head waving bouts, day 72.83.14.1-1.5-1.6-2.0-1.9
Stereotopy head waving duration, day 72.02.43.7-1.9-1.5-1.4-1.3
Locomotion velocity, session 80.81.01.7-0.1-1.0-1.3-1.1
Locomotion distance, session 80.50.72.31.50.7-0.1-0.4
Degree of sensitization distance0.90.92.3-1.5-1.0-0.60.1
Degree of sensitization stereotypy1.61.72.4-1.5-1.4-1.3-0.9
Conditioned locomotion0.60.72.21.50.4-0.5-0.4
Cocaine response after cond. corrected0.30.31.00.2-0.50.11.0
Cocaine response after cond. not corrected0.50.61.50.6-0.60.11.2
Cocaine response before conditioning0.30.30.70.80.20.30.6
Saline control response1.31.84.51.10.2-1.1-2.1
Bone: connectivity density6.810.619.24.44.12.40.7
Bone: cortical apparent density0.30.41.0-0.60.20.71.0
Bone: cortical area2.33.66.52.02.51.80.9
Bone: cortical porosity1.61.72.3-0.7-1.3-1.5-1.5
Bone: cortical porosity1.71.82.4-1.0-1.4-1.5-1.4
Bone: cortical thickness2.13.45.72.12.41.70.8
Bone: cortical thickness0.40.40.90.80.4-0.0-1.0
Bone: cortical tissue density0.30.40.8-0.60.00.60.9
Condit. Reinf. active minus inactive responses1.01.12.40.31.51.10.8
Condit. Reinf. active-inactive response ratio1.41.52.80.21.71.41.1
Condit. Reinf. active responses0.10.10.20.30.50.30.1
Condit. Reinf. inactive responses0.91.02.2-0.6-1.5-1.1-0.7
Incentive salience index mean0.40.51.10.61.00.40.4
Condit. Reinf. lever presses0.10.20.40.6-0.1-0.50.0
Condit. Reinf. active minus inactive responses0.60.81.8-0.3-0.7-0.8-1.4
Condit. Reinf. active-inactive response ratio1.72.03.8-1.0-1.1-1.4-2.0
Condit. Reinf. active responses0.30.41.00.50.0-0.4-1.0
Condit. Reinf. inactive responses0.60.71.81.30.90.40.4
Condit. Reinf. lever presses0.60.91.81.41.10.60.3
Condit. Reinf. lever reinforcers received0.20.30.80.20.2-0.4-0.9
Conditioned reinforcement - actives0.50.93.21.8-0.40.2-0.5
Conditioned reinforcement - inactives0.10.10.3-0.2-0.60.20.2
Conditioned locomotion0.30.41.11.0-0.60.10.0
Patch foraging indifference point 0 sec2.34.27.62.02.81.81.4
Patch foraging indifference point AUC0.60.92.01.41.20.40.1
Delay disc. indifference point, 0s delay0.10.20.3-0.50.40.20.4
Delay disc. indifference point, 16s delay0.10.10.3-0.6-0.1-0.40.3
Delay disc. indifference point, 2s delay1.31.43.0-1.7-1.1-1.2-0.0
Delay disc. indifference point, 24s delay1.01.13.2-1.8-0.8-0.8-0.2
Delay disc. indifference point, 4s delay0.60.61.4-0.7-0.6-1.2-0.3
Delay disc. indifference point, 8s delay0.20.30.6-0.8-0.1-0.6-0.2
Indifference point function ln k0.00.10.2-0.3-0.00.4-0.2
Indifference point function log k0.00.10.2-0.3-0.00.4-0.2
Patch foraging total patch changes 0 sec2.34.37.42.22.71.71.4
Patch foraging total patch changes 12 sec4.55.99.02.83.01.91.8
Patch foraging total patch changes 18 sec1.32.03.31.71.81.01.0
Patch foraging total patch changes 24 sec1.11.93.51.91.80.80.7
Patch foraging total patch changes 6 sec1.52.34.82.21.80.90.7
Patch foraging time to switch 0 sec0.61.32.2-1.5-1.5-0.80.5
Patch foraging water rate 0 sec1.53.26.12.52.01.60.1
Patch foraging water rate 12 sec0.20.40.7-0.00.70.6-0.9
Patch foraging water rate 18 sec0.81.22.5-0.6-0.9-0.9-1.6
Patch foraging water rate 24 sec1.01.43.81.10.7-0.3-2.0
Patch foraging water rate 6 sec0.91.32.11.01.31.50.5
Seeking ratio, delayed vs. immediate footshock0.80.92.1-1.2-1.4-0.5-0.1
Distance traveled before self-admin0.20.30.5-0.7-0.10.40.7
Distance traveled after self-admin0.00.00.10.20.4-0.00.1
Extensor digitorum longus weight2.710.521.84.73.12.81.5
Bone: elastic displacement1.21.42.6-0.4-1.0-1.4-1.6
Bone: elastic work1.62.14.32.11.60.5-1.1
Bone: endosteal estimation0.30.71.20.81.10.3-0.8
Bone: endosteal perimeter0.92.03.71.81.91.10.2
Epididymis fat weight1.96.59.01.82.22.93.0
Delta time in closed arm before/after self-admin0.20.20.40.00.50.70.2
Delta time in open arm before/after self-admin2.42.43.3-1.7-1.8-1.8-0.5
Diff in mean of infusions in LGA sessions0.10.10.20.3-0.10.4-0.2
Delay discount exponential model param1.31.42.81.71.01.30.4
Extinction: sum of active levers before priming1.01.11.60.71.31.01.1
Active lever presses in extinction session 62.02.03.31.21.81.51.0
Bone: final force0.81.32.41.61.30.6-0.8
Bone: final moment0.71.11.91.41.20.5-0.8
Food consumed during 24 hour testing period1.11.52.4-0.1-1.5-1.5-1.2
Glucose0.71.12.3-1.5-0.90.51.1
Heart weight0.20.20.60.50.80.3-0.3
Delay discount hyperbolic model param1.11.22.31.50.91.30.4
Intermittent access intake day 1-15 change0.10.20.60.80.20.0-0.4
Intermittent access intake escalation0.10.20.50.70.30.3-0.1
Intermittent access intake escalation 20.00.00.0-0.10.10.00.0
Intermitt. access day 1 inactive lever presses0.00.00.1-0.30.10.2-0.0
Intermitt. access day 15 inactive lever presses0.20.30.9-0.3-0.40.40.9
Intermitt. access escalation Index0.00.00.1-0.30.00.1-0.2
Intermittent access day 1 total infusions1.72.84.3-1.1-2.1-1.9-1.4
Intermittent access day 15 total infusions0.81.22.2-0.4-1.5-1.2-1.0
Intermittent access terminal intake (last 3 days)0.91.22.6-0.6-1.6-1.1-0.7
Intermittent access total infusions1.51.83.8-0.8-1.9-1.4-1.0
Intermittent access day 1 locomotion1.01.32.4-1.1-1.6-1.2-0.3
Intermittent access day 15 total locomotion1.01.93.1-0.9-1.8-1.5-1.1
Intermittent access total locomotion1.31.52.6-0.9-1.6-1.5-0.8
Intermittent access standard deviation0.10.20.4-0.0-0.70.10.5
Left kidney weight7.333.860.07.76.75.02.1
Right kidney weight5.926.639.76.36.05.12.2
Cocaine induced anxiety0.10.20.40.6-0.4-0.30.4
Post-drug Anxiety1.21.32.7-1.2-1.7-0.80.6
Baseline Anxiety2.12.57.5-2.7-1.40.00.7
Tail length1.86.919.14.41.80.4-2.3
Length with tail5.724.860.67.85.23.4-0.2
Length without tail9.530.646.86.86.65.12.5
Times rat made contact with spout0.50.51.8-0.2-0.3-0.4-1.4
Lifetime Intake1.41.73.7-0.8-1.9-1.3-0.9
Liver weight, left4.37.112.83.23.62.30.5
Liver weight, right2.84.98.72.92.81.70.1
Locomotor activity0.30.50.80.80.90.6-0.4
Locomotor testing distance0.40.71.00.81.01.00.2
Locomotor testing rearing0.00.10.2-0.00.40.20.0
Locomotion in novel chamber3.44.49.00.0-1.6-2.4-3.0
Locomotion in novel chamber post-restriction1.93.19.00.2-1.1-1.5-3.0
Fecal boli incidents, locomotor time 10.30.50.90.90.70.70.1
Change in fecal boli incidents, locomotor task0.30.30.9-0.7-0.9-0.20.0
Time >=10cm from walls, locomotor time 10.10.10.4-0.60.1-0.00.3
Bouts of movement, locomotor time 10.50.61.61.30.90.3-0.1
Total resting periods, locomotor time 10.70.81.81.31.10.5-0.0
Rest time, locomotor task time 10.81.02.91.7-0.5-0.6-0.7
Distance moved, locomotor task time 10.20.31.1-1.10.20.30.2
Vertical activity count, locomotor time 10.30.71.3-0.21.11.10.4
Time >=10cm from walls, locomotor time 20.81.22.41.01.50.60.9
Bouts of movement, locomotor time 21.62.65.41.52.31.50.6
Total resting periods, locomotor time 21.62.85.01.72.21.70.8
Rest time, locomotor task time 20.40.51.00.8-1.0-0.6-0.3
Distance moved, locomotor task time 20.40.51.1-0.81.00.30.1
Vertical activity count, locomotor time 20.60.81.90.41.41.0-0.1
Light reinforcement 10.40.92.1-1.5-0.9-0.70.3
Light reinforcement 20.30.40.7-0.9-0.70.10.6
Bone: marrow area0.30.61.10.81.00.2-0.9
Bone: maximum diameter1.52.85.41.92.31.40.6
Bone: maximum force1.32.34.12.02.00.9-0.4
Bone: maximum moment1.22.13.91.92.00.9-0.4
Mean time between licks in bursts0.41.12.5-1.6-0.9-1.0-0.3
Mean num. licks in bursts0.40.61.20.5-1.1-0.9-0.3
Cd content in liver1.41.62.6-1.0-1.3-1.1-1.6
Co content in liver1.82.14.2-0.7-2.0-1.7-1.1
Cu content in liver0.70.81.50.20.91.21.0
Fe content in liver6.78.111.02.53.33.32.1
K content in liver0.20.20.5-0.1-0.4-0.7-0.2
Mg content in liver0.50.51.5-0.1-1.2-0.8-0.3
Mn content in liver0.91.02.0-1.4-0.7-1.0-0.8
Na content in liver0.40.40.70.80.80.30.3
Rb content in liver0.70.81.8-1.3-0.7-0.40.9
Se content in liver3.33.96.32.01.61.72.5
Sr content in liver0.20.20.70.2-0.1-0.2-0.8
Zn content in liver1.41.53.31.81.01.30.4
Bone: minimum diameter0.10.10.2-0.50.5-0.1-0.2
Time in familiar zone, hab. session 10.40.41.3-0.21.10.50.4
Time in novel zone, hab. session 10.10.10.30.2-0.00.6-0.0
Total zone transitions, hab. session 13.34.67.6-1.7-1.5-2.8-2.4
Total locomotion distance, hab. session 10.81.23.0-0.6-0.5-1.7-1.0
Locomotion velocity, hab. session 11.72.45.0-1.3-1.4-2.2-1.1
Time in familiar zone, hab. session 22.12.23.4-0.21.41.81.9
Time in novel zone, hab. session 21.51.52.3-0.2-1.4-1.5-1.3
Total zone transitions, hab. session 22.63.35.5-0.7-1.4-2.3-2.3
Total locomotion distance, hab. session 22.33.15.6-0.8-1.4-2.4-2.0
Locomotion velocity, hab. session 22.43.25.9-0.9-1.5-2.4-2.0
Novel to familiar place preference ratio1.01.02.1-1.2-1.4-0.5-0.6
Novelty place preference0.91.02.2-1.5-1.2-0.3-0.3
Time in novel zone, NPP test0.50.61.4-1.2-0.9-0.1-0.2
Total zone transitions, NPP test0.81.22.6-0.2-0.0-1.5-1.6
Total locomotion distance, NPP test1.21.63.7-0.1-0.7-1.9-1.5
Locomotion velocity, NPP test1.72.44.8-0.3-1.0-2.2-1.9
Intraocular pressure1.01.53.81.90.41.00.9
Delta distance traveled before/after self-admin0.80.91.80.60.3-1.1-1.3
Delta ambulatory time before/after self-admin0.30.40.90.00.1-0.9-0.9
Parametrial fat weight0.81.92.60.91.51.61.4
Pavlov. Cond. lever latency2.73.46.21.02.12.51.4
Pavlov. Cond. magazine entry latency1.51.94.40.3-0.9-1.5-2.1
Pavlov. Cond. change in total contacts0.30.30.9-0.1-0.4-1.0-0.5
Pavlov. Cond. index score1.41.83.10.1-1.3-1.8-1.5
Pavlov. Cond. latency score2.02.54.5-0.2-1.5-2.1-1.8
Pavlov. Cond. lever contacts2.63.15.6-0.9-2.1-2.4-1.3
Pavlov. Cond. magazine entry number0.91.22.6-0.20.81.21.6
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.40.30.30.2
Pavlov. Cond. lever-magazine prob. diff.1.21.52.70.1-1.2-1.6-1.4
Pavlov. Cond. response bias1.41.72.60.2-1.3-1.6-1.6
Pavlov. Cond. lever latency0.00.00.1-0.1-0.10.30.2
Pavlov. Cond. magazine entry latency0.70.93.0-1.7-0.5-0.50.0
Pavlov. Cond. change in total contacts0.00.00.1-0.30.2-0.10.1
Pavlov. Cond. index score0.20.30.6-0.8-0.3-0.7-0.2
Pavlov. Cond. latency score0.20.30.5-0.7-0.3-0.6-0.2
Pavlov. Cond. lever contacts0.00.00.00.00.0-0.20.1
Pavlov. Cond. magazine entry number0.70.93.21.80.40.3-0.3
Pavlov. Cond. intertrial magazine entries0.30.51.01.00.1-0.2-1.0
Pavlov. Cond. lever-magazine prob. diff.0.30.30.9-0.9-0.3-0.6-0.2
Pavlov. Cond. response bias0.10.10.3-0.6-0.2-0.30.1
Time in closed arm before self-admin0.20.20.60.40.30.2-0.7
Time in closed arm after self-admin0.30.40.60.20.80.6-0.6
Time in open arm before self-admin0.20.20.40.20.60.50.0
Time in open arm after self-admin0.91.01.3-1.1-1.2-1.2-0.2
Bone: periosteal estimation0.91.83.71.61.91.0-0.2
Bone: periosteal perimeter2.03.57.11.82.71.61.0
Bone: post-yield work0.91.43.11.81.40.50.5
Progressive ratio test 1 active lever presses0.30.40.50.5-0.7-0.5-0.7
Progressive ratio test 1 breakpoint0.30.40.60.5-0.8-0.5-0.7
Progressive ratio test 1 inactive lever presses0.20.30.60.0-0.8-0.2-0.7
Progressive ratio test 2 active lever presses0.91.01.70.3-1.2-0.9-1.3
Progressive ratio test 2 breakpoint0.81.01.60.2-1.2-0.9-1.3
Progressive ratio test 2 inactive lever presses0.40.71.31.0-0.7-0.2-1.1
Incentive Sensitization - Responses0.60.91.4-0.4-1.2-1.0-0.9
Incentive Sensitization - Breakpoint0.70.91.5-0.4-1.2-1.1-0.9
Sum of active levers in priming session hrs 5-60.80.71.40.91.20.40.6
Progressive ratio0.71.12.8-1.0-1.7-0.7-0.5
Food seeking constrained by brief footshock0.30.41.00.00.60.61.0
Seeking ratio, punishment vs. effort0.71.12.61.01.60.70.4
Retroperitoneal fat weight1.98.111.11.62.83.33.3
Reaction time number correct0.50.92.20.81.50.7-0.5
Reaction time mean minus median1.43.46.5-1.0-2.6-2.0-1.5
Reaction time mean minus median AUC1.43.46.1-1.6-2.5-1.9-1.3
Reaction time num false alarms0.30.40.9-0.3-1.0-0.6-0.3
Reaction time num false alarms AUC0.10.10.10.4-0.3-0.00.4
Reaction time trials correct on left0.50.92.20.81.50.7-0.5
Reaction time trials on left0.40.82.00.71.40.6-0.6
Reaction time mean3.35.39.5-3.1-2.8-1.9-0.6
Reaction time mean AUC3.14.98.6-2.9-2.7-1.8-0.5
Median of all reaction times3.24.511.0-3.3-2.3-1.4-0.1
Reaction time omissions0.71.11.9-1.3-1.4-0.9-0.2
Reaction time false alarm rate0.20.30.9-0.0-0.9-0.20.6
Reaction time premature initiation rate4.56.210.0-1.0-3.1-3.2-2.0
Reaction time premature initiations2.24.06.9-0.5-2.0-2.6-2.2
Std. dev. reaction times2.24.07.3-1.9-2.7-2.0-1.1
Reaction time trials completed0.40.82.00.71.40.6-0.6
Reaction time trials AUC0.40.82.10.71.40.7-0.4
Run reversals in cocaine runway, females0.70.71.1-0.8-1.0-1.0-0.1
Run reversals in cocaine runway, males0.80.81.40.31.21.10.8
Latency to leave start box in cocaine runway3.23.68.0-0.20.82.42.8
Latency to leave start box in cocaine runway, F4.14.710.40.41.32.53.2
Latency to leave start box in cocaine runway, M0.10.10.2-0.50.10.5-0.2
Std. dev. time between licks in bursts0.00.00.1-0.1-0.0-0.00.2
Total sessions with >9 infusions0.10.20.4-0.3-0.7-0.40.1
Short access day 1 total inactive lever presses0.10.10.30.5-0.4-0.00.1
Short access day 10 total inactive lever presses0.20.51.81.3-0.10.30.5
Short access day 1 total infusions0.20.30.5-0.4-0.7-0.6-0.1
Short access day 10 total infusions0.81.02.10.1-1.4-1.3-0.7
Short access total infusions0.81.02.2-0.6-1.5-1.1-0.5
Short access day 1 locomotion1.11.32.5-1.6-1.4-0.9-0.2
Short access day 10 total locomotion0.10.20.70.00.10.30.9
Short access total locomotion0.70.91.5-1.2-1.2-0.7-0.1
One hour access (0.3 mA shock)2.63.04.4-0.5-2.0-1.8-2.1
Compulsive drug intake0.70.82.0-1.4-0.7-0.8-0.4
One hour access (shock baseline)0.61.01.90.5-1.1-0.8-1.4
Social response proportion0.50.51.90.40.2-0.3-1.4
Social responses0.81.12.60.7-0.5-1.0-1.6
Social time1.52.16.4-2.5-1.1-0.5-0.4
Soleus weight1.64.69.63.12.01.81.2
Bone: stiffness0.30.61.01.01.00.4-0.3
Tibialis anterior weight2.58.621.74.73.01.90.5
Time to tail flick, vehicle, before self-admin0.10.10.3-0.3-0.20.30.6
Time to tail flick, vehicle, after self-admin0.50.61.60.41.30.80.1
Time to tail flick, test, before self-admin1.21.22.51.31.60.80.1
Time to tail flick, test, after self-admin0.40.41.4-0.10.30.61.2
Delta time to tail flick, vehicle, before/after SA1.01.02.10.21.41.10.8
Delta time to tail flick, test, before/after SA0.70.71.1-1.0-1.0-0.70.2
Tibia length2.36.511.52.63.42.70.6
Ambulatory time before self-admin0.00.10.2-0.1-0.10.10.5
Ambulatory time after self-admin0.00.00.10.30.2-0.20.1
Bone: tissue strength0.70.71.31.01.10.60.3
Total heroin consumption1.11.32.3-1.3-1.5-1.1-0.2
Bone: trabecular number5.59.015.13.63.92.61.2
Bone: trabecular spacing1.11.54.7-2.2-0.9-0.50.3
Bone: trabecular thickness5.67.011.23.42.72.61.7
Bone: trabecular tissue density0.71.02.5-0.7-0.01.01.6
Water consumed over 24 hours0.50.61.90.50.2-0.4-1.4
Number of responses in last shaping day0.10.10.2-0.00.10.30.5