LOC134481147

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC134481147 0.05 0.06 6.1e-03 0.02 0.01 0.02 0.01 6.0e-03 8.2e-03 6.0e-03 8.3e-03
2 pVTA gene expression LOC134481147 0.05 0.03 3.6e-03 0.03 0.02 0.03 0.03 1.3e-03 5.6e-03 2.9e-03 1.9e-03
3 Brain gene expression LOC134481147 0.09 0.05 3.3e-07 0.06 0.09 0.08 0.08 1.7e-06 1.4e-08 4.3e-08 7.1e-08
4 IL gene expression LOC134481147 0.14 0.1 3.7e-03 0.13 0.11 0.1 0.1 5.1e-04 1.4e-03 2.3e-03 2.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density6.812.519.3-4.2-4.43.2-1.7
Area under the delay curve0.71.02.01.40.7-1.20.4
BMI with tail3.311.617.6-4.2-3.83.2-1.9
BMI without tail0.73.711.7-3.4-1.20.41.2
Body weight9.139.676.4-8.7-7.15.4-1.8
Weight adjusted by age0.30.81.3-1.0-1.1-0.10.9
Bone surface5.610.917.7-4.1-4.22.8-1.2
Bone volume6.112.118.6-3.8-4.33.3-2.1
Breakpoint value in progressive ratio session0.10.20.4-0.20.5-0.40.6
Number of licking bursts0.20.60.90.7-0.90.50.9
Context. condit. distance diff. score2.93.58.8-3.0-1.41.4-1.1
Locomotion velocity, session 11.31.42.50.61.6-1.50.7
Locomotion distance, session 11.62.04.21.11.0-2.01.3
Locomotion velocity, session 21.21.41.91.20.9-1.31.4
Locomotion distance, session 22.33.24.51.91.0-2.12.0
Locomotion velocity, session 30.50.60.7-0.7-0.80.9-0.7
Locomotion distance, session 30.20.20.5-0.3-0.1-0.50.7
Stereotopy head waving bouts, day 30.91.12.0-1.4-0.3-0.71.3
Stereotopy head waving duration, day 30.00.10.20.00.0-0.50.2
Locomotion velocity, session 70.30.31.01.00.1-0.3-0.4
Locomotion distance, session 70.10.20.30.50.3-0.4-0.4
Stereotopy head waving bouts, day 72.73.14.11.51.6-2.01.9
Stereotopy head waving duration, day 71.92.43.71.91.5-1.41.3
Locomotion velocity, session 80.81.01.70.11.0-1.31.1
Locomotion distance, session 80.50.72.3-1.5-0.7-0.10.4
Degree of sensitization distance0.90.92.31.51.0-0.6-0.1
Degree of sensitization stereotypy1.51.72.41.51.4-1.30.9
Conditioned locomotion0.60.72.2-1.5-0.4-0.50.4
Cocaine response after cond. corrected0.20.31.0-0.20.50.1-1.0
Cocaine response after cond. not corrected0.40.61.5-0.60.60.1-1.2
Cocaine response before conditioning0.30.30.7-0.8-0.20.3-0.6
Saline control response1.31.84.5-1.1-0.2-1.12.1
Bone: connectivity density6.610.619.2-4.4-4.12.4-0.7
Bone: cortical apparent density0.30.41.00.6-0.20.7-1.0
Bone: cortical area2.23.66.5-2.0-2.51.8-0.9
Bone: cortical porosity1.51.72.30.71.3-1.51.5
Bone: cortical porosity1.71.82.41.01.4-1.51.4
Bone: cortical thickness2.03.45.7-2.1-2.41.7-0.8
Bone: cortical thickness0.40.40.9-0.8-0.4-0.01.0
Bone: cortical tissue density0.20.40.80.6-0.00.6-0.9
Condit. Reinf. active minus inactive responses1.01.12.4-0.3-1.51.1-0.8
Condit. Reinf. active-inactive response ratio1.41.52.8-0.2-1.71.4-1.1
Condit. Reinf. active responses0.10.10.2-0.3-0.50.3-0.1
Condit. Reinf. inactive responses0.81.02.20.61.5-1.10.7
Incentive salience index mean0.40.51.1-0.6-1.00.4-0.4
Condit. Reinf. lever presses0.10.20.4-0.60.1-0.5-0.0
Condit. Reinf. active minus inactive responses0.50.81.80.30.7-0.81.4
Condit. Reinf. active-inactive response ratio1.32.03.81.01.1-1.42.0
Condit. Reinf. active responses0.20.41.0-0.5-0.0-0.41.0
Condit. Reinf. inactive responses0.50.71.8-1.3-0.90.4-0.4
Condit. Reinf. lever presses0.60.91.8-1.4-1.10.6-0.3
Condit. Reinf. lever reinforcers received0.20.30.8-0.2-0.2-0.40.9
Conditioned reinforcement - actives0.20.93.2-1.80.40.20.5
Conditioned reinforcement - inactives0.00.10.30.20.60.2-0.2
Conditioned locomotion0.30.41.1-1.00.60.1-0.0
Patch foraging indifference point 0 sec1.54.27.6-2.0-2.81.8-1.4
Patch foraging indifference point AUC0.40.92.0-1.4-1.20.4-0.1
Delay disc. indifference point, 0s delay0.10.20.30.5-0.40.2-0.4
Delay disc. indifference point, 16s delay0.10.10.30.60.1-0.4-0.3
Delay disc. indifference point, 2s delay1.31.43.01.71.1-1.20.0
Delay disc. indifference point, 24s delay0.71.13.21.80.8-0.80.2
Delay disc. indifference point, 4s delay0.60.61.40.70.6-1.20.3
Delay disc. indifference point, 8s delay0.10.30.60.80.1-0.60.2
Indifference point function ln k0.00.10.20.30.00.40.2
Indifference point function log k0.00.10.20.30.00.40.2
Patch foraging total patch changes 0 sec1.54.37.4-2.2-2.71.7-1.4
Patch foraging total patch changes 12 sec4.45.99.0-2.8-3.01.9-1.8
Patch foraging total patch changes 18 sec0.92.03.3-1.7-1.81.0-1.0
Patch foraging total patch changes 24 sec0.61.93.5-1.9-1.80.8-0.7
Patch foraging total patch changes 6 sec1.42.34.8-2.2-1.80.9-0.7
Patch foraging time to switch 0 sec0.31.32.21.51.5-0.8-0.5
Patch foraging water rate 0 sec0.93.26.1-2.5-2.01.6-0.1
Patch foraging water rate 12 sec0.10.40.70.0-0.70.60.9
Patch foraging water rate 18 sec0.51.22.50.60.9-0.91.6
Patch foraging water rate 24 sec1.01.43.8-1.1-0.7-0.32.0
Patch foraging water rate 6 sec0.91.32.1-1.0-1.31.5-0.5
Seeking ratio, delayed vs. immediate footshock0.70.92.11.21.4-0.50.1
Distance traveled before self-admin0.10.30.50.70.10.4-0.7
Distance traveled after self-admin0.00.00.1-0.2-0.4-0.0-0.1
Extensor digitorum longus weight2.610.521.8-4.7-3.12.8-1.5
Bone: elastic displacement1.11.42.60.41.0-1.41.6
Bone: elastic work1.62.14.3-2.1-1.60.51.1
Bone: endosteal estimation0.30.71.2-0.8-1.10.30.8
Bone: endosteal perimeter0.82.03.7-1.8-1.91.1-0.2
Epididymis fat weight1.36.59.0-1.8-2.22.9-3.0
Delta time in closed arm before/after self-admin0.20.20.4-0.0-0.50.7-0.2
Delta time in open arm before/after self-admin2.02.43.31.71.8-1.80.5
Diff in mean of infusions in LGA sessions0.00.10.2-0.30.10.40.2
Delay discount exponential model param1.01.42.8-1.7-1.01.3-0.4
Extinction: sum of active levers before priming0.71.11.6-0.7-1.31.0-1.1
Active lever presses in extinction session 62.02.03.3-1.2-1.81.5-1.0
Bone: final force0.81.32.4-1.6-1.30.60.8
Bone: final moment0.71.11.9-1.4-1.20.50.8
Food consumed during 24 hour testing period0.81.52.40.11.5-1.51.2
Glucose0.71.12.31.50.90.5-1.1
Heart weight0.20.20.6-0.5-0.80.30.3
Delay discount hyperbolic model param0.91.22.3-1.5-0.91.3-0.4
Intermittent access intake day 1-15 change0.00.20.6-0.8-0.20.00.4
Intermittent access intake escalation0.00.20.5-0.7-0.30.30.1
Intermittent access intake escalation 20.00.00.00.1-0.10.0-0.0
Intermitt. access day 1 inactive lever presses0.00.00.10.3-0.10.20.0
Intermitt. access day 15 inactive lever presses0.10.30.90.30.40.4-0.9
Intermitt. access escalation Index0.00.00.10.3-0.00.10.2
Intermittent access day 1 total infusions0.92.84.31.12.1-1.91.4
Intermittent access day 15 total infusions0.51.22.20.41.5-1.21.0
Intermittent access terminal intake (last 3 days)0.71.22.60.61.6-1.10.7
Intermittent access total infusions1.51.83.80.81.9-1.41.0
Intermittent access day 1 locomotion0.71.32.41.11.6-1.20.3
Intermittent access day 15 total locomotion0.51.93.10.91.8-1.51.1
Intermittent access total locomotion1.31.52.60.91.6-1.50.8
Intermittent access standard deviation0.00.20.40.00.70.1-0.5
Left kidney weight4.233.860.0-7.7-6.75.0-2.1
Right kidney weight3.826.639.7-6.3-6.05.1-2.2
Cocaine induced anxiety0.10.20.4-0.60.4-0.3-0.4
Post-drug Anxiety1.11.32.71.21.7-0.8-0.6
Baseline Anxiety1.52.57.52.71.40.0-0.7
Tail length1.36.919.1-4.4-1.80.42.3
Length with tail5.624.860.6-7.8-5.23.40.2
Length without tail5.830.646.8-6.8-6.65.1-2.5
Times rat made contact with spout0.50.51.80.20.3-0.41.4
Lifetime Intake1.41.73.70.81.9-1.30.9
Liver weight, left4.17.112.8-3.2-3.62.3-0.5
Liver weight, right2.84.98.7-2.9-2.81.7-0.1
Locomotor activity0.30.50.8-0.8-0.90.60.4
Locomotor testing distance0.30.71.0-0.8-1.01.0-0.2
Locomotor testing rearing0.00.10.20.0-0.40.2-0.0
Locomotion in novel chamber3.34.49.0-0.01.6-2.43.0
Locomotion in novel chamber post-restriction1.03.19.0-0.21.1-1.53.0
Fecal boli incidents, locomotor time 10.20.50.9-0.9-0.70.7-0.1
Change in fecal boli incidents, locomotor task0.30.30.90.70.9-0.2-0.0
Time >=10cm from walls, locomotor time 10.10.10.40.6-0.1-0.0-0.3
Bouts of movement, locomotor time 10.50.61.6-1.3-0.90.30.1
Total resting periods, locomotor time 10.70.81.8-1.3-1.10.50.0
Rest time, locomotor task time 10.61.02.9-1.70.5-0.60.7
Distance moved, locomotor task time 10.10.31.11.1-0.20.3-0.2
Vertical activity count, locomotor time 10.10.71.30.2-1.11.1-0.4
Time >=10cm from walls, locomotor time 20.41.22.4-1.0-1.50.6-0.9
Bouts of movement, locomotor time 20.82.65.4-1.5-2.31.5-0.6
Total resting periods, locomotor time 20.72.85.0-1.7-2.21.7-0.8
Rest time, locomotor task time 20.30.51.0-0.81.0-0.60.3
Distance moved, locomotor task time 20.30.51.10.8-1.00.3-0.1
Vertical activity count, locomotor time 20.30.81.9-0.4-1.41.00.1
Light reinforcement 10.20.92.11.50.9-0.7-0.3
Light reinforcement 20.20.40.70.90.70.1-0.6
Bone: marrow area0.30.61.1-0.8-1.00.20.9
Bone: maximum diameter1.42.85.4-1.9-2.31.4-0.6
Bone: maximum force1.22.34.1-2.0-2.00.90.4
Bone: maximum moment1.12.13.9-1.9-2.00.90.4
Mean time between licks in bursts0.21.12.51.60.9-1.00.3
Mean num. licks in bursts0.20.61.2-0.51.1-0.90.3
Cd content in liver1.41.62.61.01.3-1.11.6
Co content in liver1.82.14.20.72.0-1.71.1
Cu content in liver0.70.81.5-0.2-0.91.2-1.0
Fe content in liver6.58.111.0-2.5-3.33.3-2.1
K content in liver0.20.20.50.10.4-0.70.2
Mg content in liver0.50.51.50.11.2-0.80.3
Mn content in liver0.91.02.01.40.7-1.00.8
Na content in liver0.30.40.7-0.8-0.80.3-0.3
Rb content in liver0.70.81.81.30.7-0.4-0.9
Se content in liver3.33.96.3-2.0-1.61.7-2.5
Sr content in liver0.20.20.7-0.20.1-0.20.8
Zn content in liver1.31.53.3-1.8-1.01.3-0.4
Bone: minimum diameter0.10.10.20.5-0.5-0.10.2
Time in familiar zone, hab. session 10.40.41.30.2-1.10.5-0.4
Time in novel zone, hab. session 10.10.10.3-0.20.00.60.0
Total zone transitions, hab. session 13.34.67.61.71.5-2.82.4
Total locomotion distance, hab. session 10.81.23.00.60.5-1.71.0
Locomotion velocity, hab. session 11.72.45.01.31.4-2.21.1
Time in familiar zone, hab. session 22.02.23.40.2-1.41.8-1.9
Time in novel zone, hab. session 21.41.52.30.21.4-1.51.3
Total zone transitions, hab. session 22.63.35.50.71.4-2.32.3
Total locomotion distance, hab. session 22.33.15.60.81.4-2.42.0
Locomotion velocity, hab. session 22.43.25.90.91.5-2.42.0
Novel to familiar place preference ratio0.81.02.11.21.4-0.50.6
Novelty place preference0.81.02.21.51.2-0.30.3
Time in novel zone, NPP test0.50.61.41.20.9-0.10.2
Total zone transitions, NPP test0.81.22.60.20.0-1.51.6
Total locomotion distance, NPP test1.21.63.70.10.7-1.91.5
Locomotion velocity, NPP test1.62.44.80.31.0-2.21.9
Intraocular pressure0.91.53.8-1.9-0.41.0-0.9
Delta distance traveled before/after self-admin0.80.91.8-0.6-0.3-1.11.3
Delta ambulatory time before/after self-admin0.20.40.9-0.0-0.1-0.90.9
Parametrial fat weight0.81.92.6-0.9-1.51.6-1.4
Pavlov. Cond. lever latency2.73.46.2-1.0-2.12.5-1.4
Pavlov. Cond. magazine entry latency1.51.94.4-0.30.9-1.52.1
Pavlov. Cond. change in total contacts0.30.30.90.10.4-1.00.5
Pavlov. Cond. index score1.41.83.1-0.11.3-1.81.5
Pavlov. Cond. latency score1.92.54.50.21.5-2.11.8
Pavlov. Cond. lever contacts2.63.15.60.92.1-2.41.3
Pavlov. Cond. magazine entry number0.91.22.60.2-0.81.2-1.6
Pavlov. Cond. intertrial magazine entries0.10.10.20.4-0.30.3-0.2
Pavlov. Cond. lever-magazine prob. diff.1.21.52.7-0.11.2-1.61.4
Pavlov. Cond. response bias1.41.72.6-0.21.3-1.61.6
Pavlov. Cond. lever latency0.00.00.10.10.10.3-0.2
Pavlov. Cond. magazine entry latency0.60.93.01.70.5-0.5-0.0
Pavlov. Cond. change in total contacts0.00.00.10.3-0.2-0.1-0.1
Pavlov. Cond. index score0.20.30.60.80.3-0.70.2
Pavlov. Cond. latency score0.20.30.50.70.3-0.60.2
Pavlov. Cond. lever contacts0.00.00.0-0.0-0.0-0.2-0.1
Pavlov. Cond. magazine entry number0.70.93.2-1.8-0.40.30.3
Pavlov. Cond. intertrial magazine entries0.20.51.0-1.0-0.1-0.21.0
Pavlov. Cond. lever-magazine prob. diff.0.20.30.90.90.3-0.60.2
Pavlov. Cond. response bias0.10.10.30.60.2-0.3-0.1
Time in closed arm before self-admin0.10.20.6-0.4-0.30.20.7
Time in closed arm after self-admin0.30.40.6-0.2-0.80.60.6
Time in open arm before self-admin0.10.20.4-0.2-0.60.5-0.0
Time in open arm after self-admin0.91.01.31.11.2-1.20.2
Bone: periosteal estimation0.81.83.7-1.6-1.91.00.2
Bone: periosteal perimeter1.83.57.1-1.8-2.71.6-1.0
Bone: post-yield work0.81.43.1-1.8-1.40.5-0.5
Progressive ratio test 1 active lever presses0.20.40.5-0.50.7-0.50.7
Progressive ratio test 1 breakpoint0.20.40.6-0.50.8-0.50.7
Progressive ratio test 1 inactive lever presses0.10.30.6-0.00.8-0.20.7
Progressive ratio test 2 active lever presses0.71.01.7-0.31.2-0.91.3
Progressive ratio test 2 breakpoint0.81.01.6-0.21.2-0.91.3
Progressive ratio test 2 inactive lever presses0.20.71.3-1.00.7-0.21.1
Incentive Sensitization - Responses0.30.91.40.41.2-1.00.9
Incentive Sensitization - Breakpoint0.40.91.50.41.2-1.10.9
Sum of active levers in priming session hrs 5-60.70.71.4-0.9-1.20.4-0.6
Progressive ratio0.41.12.81.01.7-0.70.5
Food seeking constrained by brief footshock0.30.41.0-0.0-0.60.6-1.0
Seeking ratio, punishment vs. effort0.51.12.6-1.0-1.60.7-0.4
Retroperitoneal fat weight1.88.111.1-1.6-2.83.3-3.3
Reaction time number correct0.30.92.2-0.8-1.50.70.5
Reaction time mean minus median0.53.46.51.02.6-2.01.5
Reaction time mean minus median AUC0.53.46.11.62.5-1.91.3
Reaction time num false alarms0.20.40.90.31.0-0.60.3
Reaction time num false alarms AUC0.00.10.1-0.40.3-0.0-0.4
Reaction time trials correct on left0.30.92.2-0.8-1.50.70.5
Reaction time trials on left0.20.82.0-0.7-1.40.60.6
Reaction time mean2.45.39.53.12.8-1.90.6
Reaction time mean AUC2.04.98.62.92.7-1.80.5
Median of all reaction times2.94.511.03.32.3-1.40.1
Reaction time omissions0.71.11.91.31.4-0.90.2
Reaction time false alarm rate0.20.30.90.00.9-0.2-0.6
Reaction time premature initiation rate4.06.210.01.03.1-3.22.0
Reaction time premature initiations1.34.06.90.52.0-2.62.2
Std. dev. reaction times1.24.07.31.92.7-2.01.1
Reaction time trials completed0.20.82.0-0.7-1.40.60.6
Reaction time trials AUC0.20.82.1-0.7-1.40.70.4
Run reversals in cocaine runway, females0.60.71.10.81.0-1.00.1
Run reversals in cocaine runway, males0.70.81.4-0.3-1.21.1-0.8
Latency to leave start box in cocaine runway2.63.68.00.2-0.82.4-2.8
Latency to leave start box in cocaine runway, F3.74.710.4-0.4-1.32.5-3.2
Latency to leave start box in cocaine runway, M0.10.10.20.5-0.10.50.2
Std. dev. time between licks in bursts0.00.00.10.10.0-0.0-0.2
Total sessions with >9 infusions0.10.20.40.30.7-0.4-0.1
Short access day 1 total inactive lever presses0.10.10.3-0.50.4-0.0-0.1
Short access day 10 total inactive lever presses0.10.51.8-1.30.10.3-0.5
Short access day 1 total infusions0.10.30.50.40.7-0.60.1
Short access day 10 total infusions0.61.02.1-0.11.4-1.30.7
Short access total infusions0.71.02.20.61.5-1.10.5
Short access day 1 locomotion0.81.32.51.61.4-0.90.2
Short access day 10 total locomotion0.10.20.7-0.0-0.10.3-0.9
Short access total locomotion0.60.91.51.21.2-0.70.1
One hour access (0.3 mA shock)2.53.04.40.52.0-1.82.1
Compulsive drug intake0.50.82.01.40.7-0.80.4
One hour access (shock baseline)0.41.01.9-0.51.1-0.81.4
Social response proportion0.40.51.9-0.4-0.2-0.31.4
Social responses0.81.12.6-0.70.5-1.01.6
Social time1.32.16.42.51.1-0.50.4
Soleus weight1.64.69.6-3.1-2.01.8-1.2
Bone: stiffness0.30.61.0-1.0-1.00.40.3
Tibialis anterior weight2.58.621.7-4.7-3.01.9-0.5
Time to tail flick, vehicle, before self-admin0.10.10.30.30.20.3-0.6
Time to tail flick, vehicle, after self-admin0.30.61.6-0.4-1.30.8-0.1
Time to tail flick, test, before self-admin1.11.22.5-1.3-1.60.8-0.1
Time to tail flick, test, after self-admin0.40.41.40.1-0.30.6-1.2
Delta time to tail flick, vehicle, before/after SA0.91.02.1-0.2-1.41.1-0.8
Delta time to tail flick, test, before/after SA0.50.71.11.01.0-0.7-0.2
Tibia length2.36.511.5-2.6-3.42.7-0.6
Ambulatory time before self-admin0.00.10.20.10.10.1-0.5
Ambulatory time after self-admin0.00.00.1-0.3-0.2-0.2-0.1
Bone: tissue strength0.70.71.3-1.0-1.10.6-0.3
Total heroin consumption1.11.32.31.31.5-1.10.2
Bone: trabecular number4.89.015.1-3.6-3.92.6-1.2
Bone: trabecular spacing1.01.54.72.20.9-0.5-0.3
Bone: trabecular thickness5.07.011.2-3.4-2.72.6-1.7
Bone: trabecular tissue density0.61.02.50.70.01.0-1.6
Water consumed over 24 hours0.30.61.9-0.5-0.2-0.41.4
Number of responses in last shaping day0.10.10.20.0-0.10.3-0.5