LOC134480367

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS XR_010054783.1 0.54 0.2 6.5e-04 -0 0.01 0.01 -0 3.9e-01 3.6e-02 2.0e-02 3.9e-01
2 Liver gene expression LOC134480367 0.15 0.15 2.2e-05 0.02 0.01 0.01 0.01 1.5e-03 8.6e-03 2.1e-02 7.5e-03
3 Adipose alternative TSS XR_010054782.1 0.55 0.2 7.2e-04 -0 0.01 0.01 -0 3.9e-01 3.2e-02 1.3e-02 3.8e-01
4 Adipose gene expression LOC134480367 0.61 0.17 1.3e-05 0.02 0.04 0.03 0.01 1.9e-03 1.8e-05 3.3e-04 8.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.14.71.4-2.2-1.30.6
Area under the delay curve0.00.00.1-0.0-0.20.0-0.3
BMI with tail2.48.413.9-3.72.53.70.2
BMI without tail1.15.710.4-3.2-0.23.21.3
Body weight0.00.10.20.1-0.4-0.10.2
Weight adjusted by age2.98.516.22.90.9-2.9-4.0
Bone surface1.22.44.22.0-0.1-2.0-1.1
Bone volume1.42.84.82.2-1.2-2.2-0.6
Breakpoint value in progressive ratio session0.30.61.30.7-1.2-0.70.2
Number of licking bursts1.13.44.7-1.9-1.31.92.2
Context. condit. distance diff. score2.53.15.3-2.3-0.52.31.3
Locomotion velocity, session 10.10.10.20.1-0.3-0.1-0.4
Locomotion distance, session 10.60.82.30.30.7-0.3-1.5
Locomotion velocity, session 20.80.91.8-0.21.30.1-1.3
Locomotion distance, session 20.70.91.80.21.4-0.2-1.3
Locomotion velocity, session 30.50.60.9-0.90.20.9-0.9
Locomotion distance, session 30.70.81.5-1.2-0.21.2-0.4
Stereotopy head waving bouts, day 30.50.71.0-1.00.81.00.2
Stereotopy head waving duration, day 30.20.30.4-0.6-0.10.60.5
Locomotion velocity, session 71.01.11.80.91.3-0.9-0.9
Locomotion distance, session 70.60.81.30.51.1-0.6-1.1
Stereotopy head waving bouts, day 70.20.20.5-0.1-0.70.1-0.7
Stereotopy head waving duration, day 70.20.20.70.1-0.8-0.1-0.3
Locomotion velocity, session 80.30.40.7-0.90.00.9-0.1
Locomotion distance, session 80.91.32.3-1.50.61.5-0.5
Degree of sensitization distance1.21.32.31.50.8-1.50.0
Degree of sensitization stereotypy0.40.41.0-0.1-0.70.1-1.0
Conditioned locomotion0.10.10.30.1-0.1-0.1-0.5
Cocaine response after cond. corrected1.21.85.20.61.1-0.7-2.3
Cocaine response after cond. not corrected1.82.64.01.61.0-1.7-2.0
Cocaine response before conditioning1.01.32.51.60.2-1.6-0.0
Saline control response0.00.00.2-0.1-0.40.1-0.1
Bone: connectivity density0.20.20.30.6-0.5-0.6-0.3
Bone: cortical apparent density2.54.06.6-2.12.62.0-0.9
Bone: cortical area1.01.62.91.11.1-1.1-1.7
Bone: cortical porosity0.50.51.00.7-1.0-0.6-0.3
Bone: cortical porosity1.11.31.91.4-1.0-1.3-0.6
Bone: cortical thickness0.61.12.1-0.91.40.8-0.9
Bone: cortical thickness0.70.91.21.00.6-1.0-1.1
Bone: cortical tissue density2.43.96.4-2.12.52.0-0.9
Condit. Reinf. active minus inactive responses3.43.84.92.2-2.2-2.2-1.0
Condit. Reinf. active-inactive response ratio2.02.13.01.6-1.7-1.5-0.8
Condit. Reinf. active responses3.03.96.02.5-1.7-2.4-0.9
Condit. Reinf. inactive responses0.40.51.01.00.2-1.0-0.4
Incentive salience index mean2.73.54.62.0-2.1-1.9-1.2
Condit. Reinf. lever presses0.40.62.10.5-1.4-0.4-0.2
Condit. Reinf. active minus inactive responses2.33.55.02.2-1.1-2.2-1.7
Condit. Reinf. active-inactive response ratio1.01.71.91.3-1.4-1.3-1.1
Condit. Reinf. active responses1.42.03.31.5-0.2-1.5-1.8
Condit. Reinf. inactive responses0.71.12.50.70.9-0.8-1.6
Condit. Reinf. lever presses0.10.20.30.5-0.1-0.5-0.3
Condit. Reinf. lever reinforcers received1.52.13.11.6-0.0-1.6-1.8
Conditioned reinforcement - actives0.00.10.20.20.3-0.2-0.4
Conditioned reinforcement - inactives1.23.37.21.70.6-1.7-2.7
Conditioned locomotion1.62.45.30.12.3-0.2-2.1
Patch foraging indifference point 0 sec0.61.72.3-1.51.51.40.5
Patch foraging indifference point AUC0.20.41.20.20.7-0.21.1
Delay disc. indifference point, 0s delay0.20.20.9-0.10.10.1-0.9
Delay disc. indifference point, 16s delay0.30.51.30.5-1.1-0.50.3
Delay disc. indifference point, 2s delay0.00.00.00.10.2-0.2-0.2
Delay disc. indifference point, 24s delay0.30.40.5-0.7-0.70.70.6
Delay disc. indifference point, 4s delay0.40.40.5-0.70.70.70.3
Delay disc. indifference point, 8s delay0.30.40.60.6-0.6-0.6-0.8
Indifference point function ln k0.20.50.8-0.8-0.30.8-0.9
Indifference point function log k0.20.50.8-0.8-0.30.8-0.9
Patch foraging total patch changes 0 sec0.51.62.5-1.41.61.30.1
Patch foraging total patch changes 12 sec0.20.20.50.10.7-0.20.5
Patch foraging total patch changes 18 sec0.51.22.2-0.91.00.91.5
Patch foraging total patch changes 24 sec0.10.41.20.11.1-0.10.7
Patch foraging total patch changes 6 sec1.83.03.2-1.71.71.71.8
Patch foraging time to switch 0 sec0.10.30.70.4-0.9-0.4-0.6
Patch foraging water rate 0 sec0.20.60.6-0.80.70.80.8
Patch foraging water rate 12 sec0.10.30.5-0.6-0.20.6-0.7
Patch foraging water rate 18 sec0.10.20.7-0.2-0.90.3-0.1
Patch foraging water rate 24 sec0.20.31.00.4-0.1-0.41.0
Patch foraging water rate 6 sec0.40.61.0-1.00.21.0-0.5
Seeking ratio, delayed vs. immediate footshock2.02.95.22.3-0.9-2.2-0.8
Distance traveled before self-admin1.73.76.72.6-1.3-2.6-0.2
Distance traveled after self-admin0.81.42.71.6-0.5-1.60.4
Extensor digitorum longus weight4.016.141.3-1.06.40.8-4.6
Bone: elastic displacement1.41.72.8-1.2-1.71.21.1
Bone: elastic work1.01.31.71.3-1.2-1.3-0.6
Bone: endosteal estimation2.76.512.43.5-0.7-3.5-0.9
Bone: endosteal perimeter1.02.44.52.1-0.5-2.1-0.5
Epididymis fat weight0.63.04.62.10.7-2.1-1.6
Delta time in closed arm before/after self-admin0.20.20.3-0.30.50.3-0.5
Delta time in open arm before/after self-admin1.61.92.41.6-1.1-1.5-1.3
Diff in mean of infusions in LGA sessions0.50.91.21.1-0.8-1.00.8
Delay discount exponential model param0.00.00.10.20.2-0.20.3
Extinction: sum of active levers before priming0.30.51.50.4-1.2-0.4-0.0
Active lever presses in extinction session 60.50.51.40.3-0.7-0.3-1.2
Bone: final force1.52.53.81.90.6-1.9-1.4
Bone: final moment0.91.42.21.50.6-1.5-1.0
Food consumed during 24 hour testing period0.30.50.70.80.4-0.80.8
Glucose0.81.32.8-0.8-1.00.91.7
Heart weight0.10.10.10.3-0.3-0.3-0.4
Delay discount hyperbolic model param0.00.00.10.20.1-0.20.3
Intermittent access intake day 1-15 change0.10.61.5-0.7-0.00.71.2
Intermittent access intake escalation0.31.83.8-1.3-0.01.31.9
Intermittent access intake escalation 21.11.93.1-1.5-0.51.51.8
Intermitt. access day 1 inactive lever presses0.33.34.3-2.10.62.12.0
Intermitt. access day 15 inactive lever presses0.00.20.4-0.30.60.2-0.4
Intermitt. access escalation Index0.72.33.6-1.6-0.71.61.9
Intermittent access day 1 total infusions0.10.41.10.3-1.0-0.20.7
Intermittent access day 15 total infusions1.12.75.6-1.6-0.51.62.4
Intermittent access terminal intake (last 3 days)0.91.62.5-1.5-0.21.61.3
Intermittent access total infusions0.40.50.9-0.7-0.50.70.9
Intermittent access day 1 locomotion0.10.20.6-0.1-0.20.10.8
Intermittent access day 15 total locomotion0.10.40.9-0.20.90.21.0
Intermittent access total locomotion0.60.81.0-1.00.41.01.0
Intermittent access standard deviation0.00.20.30.40.5-0.4-0.1
Left kidney weight0.10.50.7-0.7-0.60.70.9
Right kidney weight0.00.30.8-0.40.90.40.5
Cocaine induced anxiety0.61.62.2-1.11.51.0-1.4
Post-drug Anxiety1.11.31.8-1.21.41.10.7
Baseline Anxiety0.61.11.41.2-0.9-1.20.9
Tail length0.95.113.51.8-3.7-1.70.8
Length with tail2.310.315.64.0-3.2-3.9-0.4
Length without tail1.68.616.54.0-0.5-4.1-1.2
Times rat made contact with spout1.51.72.3-1.2-1.21.21.5
Lifetime Intake0.30.40.5-0.70.00.70.7
Liver weight, left0.71.32.31.5-0.3-1.50.6
Liver weight, right1.01.73.11.8-0.7-1.8-0.2
Locomotor activity0.60.91.51.00.5-1.0-1.2
Locomotor testing distance0.10.30.70.2-0.9-0.10.8
Locomotor testing rearing0.62.34.2-1.4-1.01.42.1
Locomotion in novel chamber1.92.55.1-0.32.20.3-2.2
Locomotion in novel chamber post-restriction0.72.25.50.72.3-0.7-1.5
Fecal boli incidents, locomotor time 10.61.66.3-0.2-0.30.22.5
Change in fecal boli incidents, locomotor task0.00.00.0-0.10.10.1-0.2
Time >=10cm from walls, locomotor time 10.30.41.20.41.1-0.40.2
Bouts of movement, locomotor time 11.01.31.6-1.21.31.2-0.7
Total resting periods, locomotor time 11.31.52.6-1.31.61.2-0.4
Rest time, locomotor task time 11.22.04.0-1.4-0.11.42.0
Distance moved, locomotor task time 10.20.60.80.9-0.8-0.8-0.5
Vertical activity count, locomotor time 10.00.20.50.50.0-0.5-0.7
Time >=10cm from walls, locomotor time 20.31.01.41.1-1.2-1.0-0.6
Bouts of movement, locomotor time 20.62.14.4-1.12.11.0-1.4
Total resting periods, locomotor time 20.52.14.2-1.12.11.1-1.2
Rest time, locomotor task time 20.50.91.7-1.30.41.30.2
Distance moved, locomotor task time 20.70.91.51.2-0.7-1.2-0.5
Vertical activity count, locomotor time 20.00.10.30.10.0-0.0-0.6
Light reinforcement 10.73.110.2-1.03.20.9-0.5
Light reinforcement 20.40.81.7-0.91.30.8-0.2
Bone: marrow area2.56.011.53.4-0.6-3.4-0.9
Bone: maximum diameter0.20.40.50.60.4-0.6-0.7
Bone: maximum force2.14.27.22.70.5-2.7-1.5
Bone: maximum moment1.42.74.62.10.5-2.1-1.1
Mean time between licks in bursts0.74.011.00.12.2-0.2-3.3
Mean num. licks in bursts0.20.60.70.80.6-0.8-0.9
Cd content in liver5.76.316.7-1.0-2.61.14.1
Co content in liver1.82.23.7-0.9-1.90.91.8
Cu content in liver0.40.51.80.4-1.3-0.4-0.0
Fe content in liver1.01.24.60.1-2.1-0.00.5
K content in liver1.91.84.30.32.1-0.4-1.7
Mg content in liver0.20.30.7-0.10.80.1-0.6
Mn content in liver1.71.95.8-0.80.70.7-2.4
Na content in liver1.41.55.40.60.2-0.6-2.3
Rb content in liver3.13.67.20.52.7-0.6-2.6
Se content in liver0.50.61.90.20.6-0.2-1.4
Sr content in liver0.50.50.8-0.90.10.90.6
Zn content in liver0.40.41.4-0.4-0.00.41.2
Bone: minimum diameter1.22.33.91.90.7-2.0-1.1
Time in familiar zone, hab. session 11.41.63.3-1.2-0.31.21.8
Time in novel zone, hab. session 11.51.73.61.3-1.9-1.20.3
Total zone transitions, hab. session 11.31.93.11.70.8-1.8-0.8
Total locomotion distance, hab. session 13.14.37.42.70.9-2.7-1.5
Locomotion velocity, hab. session 12.53.54.82.11.5-2.2-1.6
Time in familiar zone, hab. session 20.30.41.0-0.4-0.20.41.0
Time in novel zone, hab. session 20.10.10.50.1-0.7-0.10.1
Total zone transitions, hab. session 20.10.10.20.4-0.1-0.4-0.3
Total locomotion distance, hab. session 21.51.93.31.80.0-1.8-1.0
Locomotion velocity, hab. session 21.21.72.71.60.3-1.7-1.0
Novel to familiar place preference ratio3.03.97.21.9-1.2-1.9-2.7
Novelty place preference2.12.75.21.4-1.2-1.4-2.3
Time in novel zone, NPP test2.02.44.31.4-1.4-1.3-2.1
Total zone transitions, NPP test0.10.10.4-0.30.60.3-0.1
Total locomotion distance, NPP test0.20.30.50.70.3-0.7-0.5
Locomotion velocity, NPP test0.30.40.60.50.7-0.5-0.8
Intraocular pressure0.60.92.9-0.6-0.30.61.7
Delta distance traveled before/after self-admin0.20.30.3-0.60.60.60.4
Delta ambulatory time before/after self-admin0.20.40.7-0.60.90.6-0.2
Parametrial fat weight0.92.25.4-1.30.51.22.3
Pavlov. Cond. lever latency0.81.03.5-0.61.90.50.1
Pavlov. Cond. magazine entry latency1.72.23.81.6-1.9-1.50.5
Pavlov. Cond. change in total contacts1.92.12.71.6-1.6-1.5-0.9
Pavlov. Cond. index score1.31.74.80.9-2.2-0.80.5
Pavlov. Cond. latency score1.41.84.61.1-2.1-1.10.2
Pavlov. Cond. lever contacts0.81.03.60.4-1.9-0.40.0
Pavlov. Cond. magazine entry number2.22.85.6-1.72.41.6-0.4
Pavlov. Cond. intertrial magazine entries0.20.20.60.20.2-0.2-0.8
Pavlov. Cond. lever-magazine prob. diff.1.21.53.91.0-2.0-0.90.3
Pavlov. Cond. response bias1.62.05.11.2-2.3-1.20.1
Pavlov. Cond. lever latency0.40.60.9-1.00.40.90.6
Pavlov. Cond. magazine entry latency0.71.02.00.8-0.8-0.81.4
Pavlov. Cond. change in total contacts0.41.01.41.2-1.2-1.20.1
Pavlov. Cond. index score0.71.01.71.3-0.7-1.30.5
Pavlov. Cond. latency score0.81.22.11.4-0.5-1.40.6
Pavlov. Cond. lever contacts0.50.71.11.0-0.8-1.0-0.4
Pavlov. Cond. magazine entry number0.91.12.7-0.71.00.6-1.6
Pavlov. Cond. intertrial magazine entries0.30.61.1-0.51.10.5-1.0
Pavlov. Cond. lever-magazine prob. diff.0.50.71.21.1-0.5-1.10.6
Pavlov. Cond. response bias1.11.62.41.5-0.9-1.5-0.9
Time in closed arm before self-admin1.42.55.31.2-1.4-1.22.3
Time in closed arm after self-admin0.30.30.90.4-0.4-0.40.9
Time in open arm before self-admin0.81.01.4-1.20.91.2-0.7
Time in open arm after self-admin1.61.82.61.6-1.0-1.6-1.1
Bone: periosteal estimation2.04.78.72.9-0.1-3.0-1.3
Bone: periosteal perimeter0.71.32.31.5-0.4-1.5-0.7
Bone: post-yield work0.81.32.61.6-0.1-1.6-0.4
Progressive ratio test 1 active lever presses0.00.10.1-0.30.20.3-0.1
Progressive ratio test 1 breakpoint0.00.00.10.00.2-0.0-0.1
Progressive ratio test 1 inactive lever presses0.41.02.0-1.01.41.0-0.3
Progressive ratio test 2 active lever presses0.30.41.5-0.20.00.2-1.2
Progressive ratio test 2 breakpoint0.30.30.9-0.5-0.00.5-1.0
Progressive ratio test 2 inactive lever presses0.10.40.7-0.80.00.80.4
Incentive Sensitization - Responses0.10.20.40.4-0.6-0.3-0.6
Incentive Sensitization - Breakpoint0.10.10.30.1-0.5-0.0-0.4
Sum of active levers in priming session hrs 5-62.42.33.92.0-1.1-1.9-0.7
Progressive ratio0.10.30.8-0.00.9-0.0-0.5
Food seeking constrained by brief footshock0.20.20.60.00.8-0.10.6
Seeking ratio, punishment vs. effort0.10.10.20.40.4-0.4-0.2
Retroperitoneal fat weight0.52.14.70.61.7-0.6-2.2
Reaction time number correct0.41.33.5-0.41.20.3-1.9
Reaction time mean minus median0.10.92.20.7-1.5-0.70.6
Reaction time mean minus median AUC0.10.82.00.4-1.4-0.40.9
Reaction time num false alarms1.93.36.0-1.72.51.71.1
Reaction time num false alarms AUC1.32.98.1-1.42.81.30.3
Reaction time trials correct on left0.41.33.5-0.41.20.3-1.9
Reaction time trials on left0.41.23.2-0.41.20.3-1.8
Reaction time mean1.94.36.42.3-2.5-2.2-1.0
Reaction time mean AUC1.64.05.52.1-2.4-2.0-1.2
Median of all reaction times3.04.76.52.3-2.6-2.2-1.4
Reaction time omissions1.01.64.4-0.5-1.30.52.1
Reaction time false alarm rate1.21.73.5-1.01.91.01.2
Reaction time premature initiation rate0.10.20.60.2-0.4-0.10.7
Reaction time premature initiations0.00.10.50.20.2-0.2-0.7
Std. dev. reaction times0.93.16.11.8-2.5-1.70.3
Reaction time trials completed0.41.23.2-0.41.20.3-1.8
Reaction time trials AUC0.31.23.0-0.51.10.4-1.7
Run reversals in cocaine runway, females2.02.24.71.31.0-1.3-2.2
Run reversals in cocaine runway, males0.60.61.2-0.81.10.8-0.0
Latency to leave start box in cocaine runway3.34.66.9-2.62.22.50.2
Latency to leave start box in cocaine runway, F3.94.87.8-2.81.42.81.4
Latency to leave start box in cocaine runway, M1.91.83.8-0.62.00.5-1.7
Std. dev. time between licks in bursts2.13.95.5-2.12.32.0-1.4
Total sessions with >9 infusions1.01.33.5-0.11.90.0-1.3
Short access day 1 total inactive lever presses1.12.24.7-0.61.90.52.2
Short access day 10 total inactive lever presses0.10.72.5-0.20.50.21.6
Short access day 1 total infusions1.22.34.70.52.0-0.6-2.2
Short access day 10 total infusions1.01.63.1-1.7-0.21.8-0.4
Short access total infusions0.20.30.4-0.50.60.5-0.6
Short access day 1 locomotion1.62.74.70.82.2-0.9-2.2
Short access day 10 total locomotion0.20.71.8-0.60.40.61.4
Short access total locomotion0.60.93.2-0.31.80.3-0.6
One hour access (0.3 mA shock)0.20.20.40.4-0.7-0.30.3
Compulsive drug intake0.71.11.2-1.11.11.00.9
One hour access (shock baseline)0.20.61.20.4-1.0-0.31.1
Social response proportion0.30.40.90.3-0.7-0.3-1.0
Social responses0.50.61.0-1.00.01.00.7
Social time0.40.62.1-0.3-1.50.30.3
Soleus weight0.51.44.7-0.22.20.1-0.8
Bone: stiffness2.13.96.72.50.9-2.6-1.3
Tibialis anterior weight2.06.917.1-1.64.11.5-2.5
Time to tail flick, vehicle, before self-admin0.80.92.9-0.6-0.30.71.7
Time to tail flick, vehicle, after self-admin0.51.02.80.4-1.0-0.31.7
Time to tail flick, test, before self-admin1.01.23.6-0.81.90.70.0
Time to tail flick, test, after self-admin1.21.33.9-0.82.00.7-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.30.5-0.4-0.5-0.1
Delta time to tail flick, test, before/after SA0.10.10.2-0.1-0.50.10.4
Tibia length4.211.621.84.7-1.0-4.7-1.4
Ambulatory time before self-admin1.13.35.42.3-1.6-2.30.2
Ambulatory time after self-admin0.40.61.01.0-0.4-1.00.7
Bone: tissue strength0.20.20.3-0.6-0.20.50.6
Total heroin consumption0.40.51.20.0-1.10.00.8
Bone: trabecular number0.50.92.00.9-1.4-0.80.3
Bone: trabecular spacing0.50.71.70.21.3-0.2-0.9
Bone: trabecular thickness2.53.59.20.9-3.0-0.81.8
Bone: trabecular tissue density0.61.01.41.2-0.0-1.2-1.1
Water consumed over 24 hours1.01.94.2-1.3-0.11.32.0
Number of responses in last shaping day0.40.61.01.00.1-1.0-0.6