LOC134480367

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS XR_010054783.1 0.54 0.2 6.5e-04 -0 0.01 0.01 -0 3.9e-01 3.6e-02 2.0e-02 4.0e-01
2 Liver gene expression LOC134480367 0.15 0.15 2.2e-05 0.02 0.01 0.01 0.01 1.5e-03 8.6e-03 2.1e-02 7.2e-03
3 Adipose alternative TSS XR_010054782.1 0.55 0.2 7.2e-04 -0 0.01 0.01 0 3.9e-01 3.2e-02 1.3e-02 3.7e-01
4 Adipose gene expression LOC134480367 0.61 0.17 1.3e-05 0.02 0.04 0.03 0.01 1.9e-03 1.8e-05 3.2e-04 9.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.14.7-1.42.21.30.6
Area under the delay curve0.00.00.10.00.2-0.0-0.3
BMI with tail2.48.413.93.7-2.5-3.70.2
BMI without tail1.95.710.43.20.2-3.21.3
Body weight0.00.10.2-0.10.40.10.2
Weight adjusted by age5.68.516.2-2.9-0.92.9-4.0
Bone surface1.32.44.2-2.00.12.0-1.1
Bone volume1.62.84.8-2.21.22.2-0.6
Breakpoint value in progressive ratio session0.50.61.3-0.71.20.70.2
Number of licking bursts2.13.44.71.91.3-1.92.2
Context. condit. distance diff. score2.63.15.32.30.5-2.31.3
Locomotion velocity, session 10.10.10.2-0.10.30.1-0.4
Locomotion distance, session 10.60.82.3-0.3-0.70.3-1.5
Locomotion velocity, session 20.80.91.80.2-1.3-0.1-1.3
Locomotion distance, session 20.70.91.8-0.2-1.40.2-1.3
Locomotion velocity, session 30.50.60.90.9-0.2-0.9-0.9
Locomotion distance, session 30.80.81.51.20.2-1.2-0.4
Stereotopy head waving bouts, day 30.60.71.01.0-0.8-1.00.2
Stereotopy head waving duration, day 30.20.30.40.60.1-0.60.5
Locomotion velocity, session 71.01.11.8-0.9-1.30.9-0.9
Locomotion distance, session 70.60.81.3-0.5-1.10.6-1.1
Stereotopy head waving bouts, day 70.20.20.50.10.7-0.1-0.7
Stereotopy head waving duration, day 70.20.20.7-0.10.80.1-0.3
Locomotion velocity, session 80.30.40.70.9-0.0-0.9-0.1
Locomotion distance, session 80.91.32.31.5-0.6-1.5-0.5
Degree of sensitization distance1.21.32.3-1.5-0.81.50.0
Degree of sensitization stereotypy0.40.41.00.10.7-0.1-1.0
Conditioned locomotion0.10.10.3-0.10.10.1-0.5
Cocaine response after cond. corrected1.51.85.2-0.6-1.10.7-2.3
Cocaine response after cond. not corrected2.22.64.0-1.6-1.01.7-2.0
Cocaine response before conditioning1.01.32.5-1.6-0.21.6-0.0
Saline control response0.00.00.20.10.4-0.1-0.1
Bone: connectivity density0.20.20.3-0.60.50.6-0.3
Bone: cortical apparent density2.94.06.62.1-2.6-2.0-0.9
Bone: cortical area1.11.62.9-1.1-1.11.1-1.7
Bone: cortical porosity0.50.51.0-0.71.00.6-0.3
Bone: cortical porosity1.21.31.9-1.41.01.3-0.6
Bone: cortical thickness0.61.12.10.9-1.4-0.8-0.9
Bone: cortical thickness0.80.91.2-1.0-0.61.0-1.1
Bone: cortical tissue density2.83.96.42.1-2.5-2.0-0.9
Condit. Reinf. active minus inactive responses3.43.84.9-2.22.22.2-1.0
Condit. Reinf. active-inactive response ratio2.02.13.0-1.61.71.5-0.8
Condit. Reinf. active responses3.13.96.0-2.51.72.4-0.9
Condit. Reinf. inactive responses0.40.51.0-1.0-0.21.0-0.4
Incentive salience index mean2.83.54.6-2.02.11.9-1.2
Condit. Reinf. lever presses0.50.62.1-0.51.40.4-0.2
Condit. Reinf. active minus inactive responses2.73.55.0-2.21.12.2-1.7
Condit. Reinf. active-inactive response ratio1.41.71.9-1.31.41.3-1.1
Condit. Reinf. active responses1.42.03.3-1.50.21.5-1.8
Condit. Reinf. inactive responses0.81.12.5-0.7-0.90.8-1.6
Condit. Reinf. lever presses0.10.20.3-0.50.10.5-0.3
Condit. Reinf. lever reinforcers received1.52.13.1-1.60.01.6-1.8
Conditioned reinforcement - actives0.10.10.2-0.2-0.30.2-0.4
Conditioned reinforcement - inactives2.23.37.2-1.7-0.61.7-2.7
Conditioned locomotion1.92.45.3-0.1-2.30.2-2.1
Patch foraging indifference point 0 sec0.91.72.31.5-1.5-1.40.5
Patch foraging indifference point AUC0.30.41.2-0.2-0.70.21.1
Delay disc. indifference point, 0s delay0.20.20.90.1-0.1-0.1-0.9
Delay disc. indifference point, 16s delay0.40.51.3-0.51.10.50.3
Delay disc. indifference point, 2s delay0.00.00.0-0.1-0.20.2-0.2
Delay disc. indifference point, 24s delay0.40.40.50.70.7-0.70.6
Delay disc. indifference point, 4s delay0.40.40.50.7-0.7-0.70.3
Delay disc. indifference point, 8s delay0.40.40.6-0.60.60.6-0.8
Indifference point function ln k0.30.50.80.80.3-0.8-0.9
Indifference point function log k0.30.50.80.80.3-0.8-0.9
Patch foraging total patch changes 0 sec0.81.62.51.4-1.6-1.30.1
Patch foraging total patch changes 12 sec0.20.20.5-0.1-0.70.20.5
Patch foraging total patch changes 18 sec0.81.22.20.9-1.0-0.91.5
Patch foraging total patch changes 24 sec0.20.41.2-0.1-1.10.10.7
Patch foraging total patch changes 6 sec2.03.03.21.7-1.7-1.71.8
Patch foraging time to switch 0 sec0.20.30.7-0.40.90.4-0.6
Patch foraging water rate 0 sec0.30.60.60.8-0.7-0.80.8
Patch foraging water rate 12 sec0.10.30.50.60.2-0.6-0.7
Patch foraging water rate 18 sec0.10.20.70.20.9-0.3-0.1
Patch foraging water rate 24 sec0.20.31.0-0.40.10.41.0
Patch foraging water rate 6 sec0.40.61.01.0-0.2-1.0-0.5
Seeking ratio, delayed vs. immediate footshock2.42.95.2-2.30.92.2-0.8
Distance traveled before self-admin2.83.76.7-2.61.32.6-0.2
Distance traveled after self-admin1.21.42.7-1.60.51.60.4
Extensor digitorum longus weight4.116.141.31.0-6.4-0.8-4.6
Bone: elastic displacement1.51.72.81.21.7-1.21.1
Bone: elastic work1.01.31.7-1.31.21.3-0.6
Bone: endosteal estimation3.06.512.4-3.50.73.5-0.9
Bone: endosteal perimeter1.12.44.5-2.10.52.1-0.5
Epididymis fat weight0.93.04.6-2.1-0.72.1-1.6
Delta time in closed arm before/after self-admin0.20.20.30.3-0.5-0.3-0.5
Delta time in open arm before/after self-admin1.91.92.4-1.61.11.5-1.3
Diff in mean of infusions in LGA sessions0.70.91.2-1.10.81.00.8
Delay discount exponential model param0.00.00.1-0.2-0.20.20.3
Extinction: sum of active levers before priming0.40.51.5-0.41.20.4-0.0
Active lever presses in extinction session 60.50.51.4-0.30.70.3-1.2
Bone: final force1.52.53.8-1.9-0.61.9-1.4
Bone: final moment0.91.42.2-1.5-0.61.5-1.0
Food consumed during 24 hour testing period0.40.50.7-0.8-0.40.80.8
Glucose0.81.32.80.81.0-0.91.7
Heart weight0.10.10.1-0.30.30.3-0.4
Delay discount hyperbolic model param0.00.00.1-0.2-0.10.20.3
Intermittent access intake day 1-15 change0.30.61.50.70.0-0.71.2
Intermittent access intake escalation0.91.83.81.30.0-1.31.9
Intermittent access intake escalation 21.71.93.11.50.5-1.51.8
Intermitt. access day 1 inactive lever presses0.93.34.32.1-0.6-2.12.0
Intermitt. access day 15 inactive lever presses0.10.20.40.3-0.6-0.2-0.4
Intermitt. access escalation Index1.62.33.61.60.7-1.61.9
Intermittent access day 1 total infusions0.30.41.1-0.31.00.20.7
Intermittent access day 15 total infusions1.82.75.61.60.5-1.62.4
Intermittent access terminal intake (last 3 days)1.21.62.51.50.2-1.61.3
Intermittent access total infusions0.40.50.90.70.5-0.70.9
Intermittent access day 1 locomotion0.10.20.60.10.2-0.10.8
Intermittent access day 15 total locomotion0.20.40.90.2-0.9-0.21.0
Intermittent access total locomotion0.60.81.01.0-0.4-1.01.0
Intermittent access standard deviation0.10.20.3-0.4-0.50.4-0.1
Left kidney weight0.10.50.70.70.6-0.70.9
Right kidney weight0.10.30.80.4-0.9-0.40.5
Cocaine induced anxiety1.11.62.21.1-1.5-1.0-1.4
Post-drug Anxiety1.21.31.81.2-1.4-1.10.7
Baseline Anxiety0.91.11.4-1.20.91.20.9
Tail length1.35.113.5-1.83.71.70.8
Length with tail2.410.315.6-4.03.23.9-0.4
Length without tail2.78.616.5-4.00.54.1-1.2
Times rat made contact with spout1.51.72.31.21.2-1.21.5
Lifetime Intake0.30.40.50.7-0.0-0.70.7
Liver weight, left0.81.32.3-1.50.31.50.6
Liver weight, right1.01.73.1-1.80.71.8-0.2
Locomotor activity0.60.91.5-1.0-0.51.0-1.2
Locomotor testing distance0.20.30.7-0.20.90.10.8
Locomotor testing rearing1.22.34.21.41.0-1.42.1
Locomotion in novel chamber2.02.55.10.3-2.2-0.3-2.2
Locomotion in novel chamber post-restriction1.32.25.5-0.7-2.30.7-1.5
Fecal boli incidents, locomotor time 11.11.66.30.20.3-0.22.5
Change in fecal boli incidents, locomotor task0.00.00.00.1-0.1-0.1-0.2
Time >=10cm from walls, locomotor time 10.40.41.2-0.4-1.10.40.2
Bouts of movement, locomotor time 11.11.31.61.2-1.3-1.2-0.7
Total resting periods, locomotor time 11.31.52.61.3-1.6-1.2-0.4
Rest time, locomotor task time 11.62.04.01.40.1-1.42.0
Distance moved, locomotor task time 10.40.60.8-0.90.80.8-0.5
Vertical activity count, locomotor time 10.10.20.5-0.5-0.00.5-0.7
Time >=10cm from walls, locomotor time 20.71.01.4-1.11.21.0-0.6
Bouts of movement, locomotor time 21.32.14.41.1-2.1-1.0-1.4
Total resting periods, locomotor time 21.22.14.21.1-2.1-1.1-1.2
Rest time, locomotor task time 20.70.91.71.3-0.4-1.30.2
Distance moved, locomotor task time 20.80.91.5-1.20.71.2-0.5
Vertical activity count, locomotor time 20.10.10.3-0.1-0.00.0-0.6
Light reinforcement 11.33.110.21.0-3.2-0.9-0.5
Light reinforcement 20.50.81.70.9-1.3-0.8-0.2
Bone: marrow area2.86.011.5-3.40.63.4-0.9
Bone: maximum diameter0.20.40.5-0.6-0.40.6-0.7
Bone: maximum force2.44.27.2-2.7-0.52.7-1.5
Bone: maximum moment1.52.74.6-2.1-0.52.1-1.1
Mean time between licks in bursts1.64.011.0-0.1-2.20.2-3.3
Mean num. licks in bursts0.40.60.7-0.8-0.60.8-0.9
Cd content in liver5.76.316.71.02.6-1.14.1
Co content in liver1.92.23.70.91.9-0.91.8
Cu content in liver0.40.51.8-0.41.30.4-0.0
Fe content in liver1.01.24.6-0.12.10.00.5
K content in liver1.91.84.3-0.3-2.10.4-1.7
Mg content in liver0.30.30.70.1-0.8-0.1-0.6
Mn content in liver1.71.95.80.8-0.7-0.7-2.4
Na content in liver1.41.55.4-0.6-0.20.6-2.3
Rb content in liver3.13.67.2-0.5-2.70.6-2.6
Se content in liver0.50.61.9-0.2-0.60.2-1.4
Sr content in liver0.50.50.80.9-0.1-0.90.6
Zn content in liver0.40.41.40.40.0-0.41.2
Bone: minimum diameter1.32.33.9-1.9-0.72.0-1.1
Time in familiar zone, hab. session 11.61.63.31.20.3-1.21.8
Time in novel zone, hab. session 11.71.73.6-1.31.91.20.3
Total zone transitions, hab. session 11.31.93.1-1.7-0.81.8-0.8
Total locomotion distance, hab. session 13.14.37.4-2.7-0.92.7-1.5
Locomotion velocity, hab. session 12.53.54.8-2.1-1.52.2-1.6
Time in familiar zone, hab. session 20.30.41.00.40.2-0.41.0
Time in novel zone, hab. session 20.10.10.5-0.10.70.10.1
Total zone transitions, hab. session 20.10.10.2-0.40.10.4-0.3
Total locomotion distance, hab. session 21.51.93.3-1.8-0.01.8-1.0
Locomotion velocity, hab. session 21.21.72.7-1.6-0.31.7-1.0
Novel to familiar place preference ratio3.63.97.2-1.91.21.9-2.7
Novelty place preference2.52.75.2-1.41.21.4-2.3
Time in novel zone, NPP test2.32.44.3-1.41.41.3-2.1
Total zone transitions, NPP test0.10.10.40.3-0.6-0.3-0.1
Total locomotion distance, NPP test0.20.30.5-0.7-0.30.7-0.5
Locomotion velocity, NPP test0.30.40.6-0.5-0.70.5-0.8
Intraocular pressure0.70.92.90.60.3-0.61.7
Delta distance traveled before/after self-admin0.30.30.30.6-0.6-0.60.4
Delta ambulatory time before/after self-admin0.30.40.70.6-0.9-0.6-0.2
Parametrial fat weight0.92.25.41.3-0.5-1.22.3
Pavlov. Cond. lever latency0.81.03.50.6-1.9-0.50.1
Pavlov. Cond. magazine entry latency1.72.23.8-1.61.91.50.5
Pavlov. Cond. change in total contacts2.02.12.7-1.61.61.5-0.9
Pavlov. Cond. index score1.31.74.8-0.92.20.80.5
Pavlov. Cond. latency score1.41.84.6-1.12.11.10.2
Pavlov. Cond. lever contacts0.81.03.6-0.41.90.40.0
Pavlov. Cond. magazine entry number2.22.85.61.7-2.4-1.6-0.4
Pavlov. Cond. intertrial magazine entries0.20.20.6-0.2-0.20.2-0.8
Pavlov. Cond. lever-magazine prob. diff.1.21.53.9-1.02.00.90.3
Pavlov. Cond. response bias1.62.05.1-1.22.31.20.1
Pavlov. Cond. lever latency0.40.60.91.0-0.4-0.90.6
Pavlov. Cond. magazine entry latency0.81.02.0-0.80.80.81.4
Pavlov. Cond. change in total contacts0.71.01.4-1.21.21.20.1
Pavlov. Cond. index score0.81.01.7-1.30.71.30.5
Pavlov. Cond. latency score0.91.22.1-1.40.51.40.6
Pavlov. Cond. lever contacts0.50.71.1-1.00.81.0-0.4
Pavlov. Cond. magazine entry number0.91.12.70.7-1.0-0.6-1.6
Pavlov. Cond. intertrial magazine entries0.40.61.10.5-1.1-0.5-1.0
Pavlov. Cond. lever-magazine prob. diff.0.60.71.2-1.10.51.10.6
Pavlov. Cond. response bias1.11.62.4-1.50.91.5-0.9
Time in closed arm before self-admin1.92.55.3-1.21.41.22.3
Time in closed arm after self-admin0.30.30.9-0.40.40.40.9
Time in open arm before self-admin0.91.01.41.2-0.9-1.2-0.7
Time in open arm after self-admin1.71.82.6-1.61.01.6-1.1
Bone: periosteal estimation2.34.78.7-2.90.13.0-1.3
Bone: periosteal perimeter0.81.32.3-1.50.41.5-0.7
Bone: post-yield work0.91.32.6-1.60.11.6-0.4
Progressive ratio test 1 active lever presses0.10.10.10.3-0.2-0.3-0.1
Progressive ratio test 1 breakpoint0.00.00.1-0.0-0.20.0-0.1
Progressive ratio test 1 inactive lever presses0.71.02.01.0-1.4-1.0-0.3
Progressive ratio test 2 active lever presses0.30.41.50.2-0.0-0.2-1.2
Progressive ratio test 2 breakpoint0.30.30.90.50.0-0.5-1.0
Progressive ratio test 2 inactive lever presses0.20.40.70.8-0.0-0.80.4
Incentive Sensitization - Responses0.20.20.4-0.40.60.3-0.6
Incentive Sensitization - Breakpoint0.10.10.3-0.10.50.0-0.4
Sum of active levers in priming session hrs 5-62.52.33.9-2.01.11.9-0.7
Progressive ratio0.20.30.80.0-0.90.0-0.5
Food seeking constrained by brief footshock0.20.20.6-0.0-0.80.10.6
Seeking ratio, punishment vs. effort0.10.10.2-0.4-0.40.4-0.2
Retroperitoneal fat weight0.52.14.7-0.6-1.70.6-2.2
Reaction time number correct0.71.33.50.4-1.2-0.3-1.9
Reaction time mean minus median0.40.92.2-0.71.50.70.6
Reaction time mean minus median AUC0.30.82.0-0.41.40.40.9
Reaction time num false alarms2.33.36.01.7-2.5-1.71.1
Reaction time num false alarms AUC1.92.98.11.4-2.8-1.30.3
Reaction time trials correct on left0.71.33.50.4-1.2-0.3-1.9
Reaction time trials on left0.61.23.20.4-1.2-0.3-1.8
Reaction time mean2.74.36.4-2.32.52.2-1.0
Reaction time mean AUC2.54.05.5-2.12.42.0-1.2
Median of all reaction times3.34.76.5-2.32.62.2-1.4
Reaction time omissions1.11.64.40.51.3-0.52.1
Reaction time false alarm rate1.21.73.51.0-1.9-1.01.2
Reaction time premature initiation rate0.10.20.6-0.20.40.10.7
Reaction time premature initiations0.10.10.5-0.2-0.20.2-0.7
Std. dev. reaction times1.73.16.1-1.82.51.70.3
Reaction time trials completed0.61.23.20.4-1.2-0.3-1.8
Reaction time trials AUC0.61.23.00.5-1.1-0.4-1.7
Run reversals in cocaine runway, females2.22.24.7-1.3-1.01.3-2.2
Run reversals in cocaine runway, males0.60.61.20.8-1.1-0.8-0.0
Latency to leave start box in cocaine runway4.04.66.92.6-2.2-2.50.2
Latency to leave start box in cocaine runway, F4.24.87.82.8-1.4-2.81.4
Latency to leave start box in cocaine runway, M1.91.83.80.6-2.0-0.5-1.7
Std. dev. time between licks in bursts2.93.95.52.1-2.3-2.0-1.4
Total sessions with >9 infusions1.11.33.50.1-1.9-0.0-1.3
Short access day 1 total inactive lever presses1.72.24.70.6-1.9-0.52.2
Short access day 10 total inactive lever presses0.30.72.50.2-0.5-0.21.6
Short access day 1 total infusions1.72.34.7-0.5-2.00.6-2.2
Short access day 10 total infusions1.31.63.11.70.2-1.8-0.4
Short access total infusions0.30.30.40.5-0.6-0.5-0.6
Short access day 1 locomotion2.22.74.7-0.8-2.20.9-2.2
Short access day 10 total locomotion0.40.71.80.6-0.4-0.61.4
Short access total locomotion0.80.93.20.3-1.8-0.3-0.6
One hour access (0.3 mA shock)0.20.20.4-0.40.70.30.3
Compulsive drug intake0.91.11.21.1-1.1-1.00.9
One hour access (shock baseline)0.40.61.2-0.41.00.31.1
Social response proportion0.30.40.9-0.30.70.3-1.0
Social responses0.50.61.01.0-0.0-1.00.7
Social time0.40.62.10.31.5-0.30.3
Soleus weight0.51.44.70.2-2.2-0.1-0.8
Bone: stiffness2.43.96.7-2.5-0.92.6-1.3
Tibialis anterior weight2.06.917.11.6-4.1-1.5-2.5
Time to tail flick, vehicle, before self-admin0.90.92.90.60.3-0.71.7
Time to tail flick, vehicle, after self-admin0.71.02.8-0.41.00.31.7
Time to tail flick, test, before self-admin1.11.23.60.8-1.9-0.70.0
Time to tail flick, test, after self-admin1.21.33.90.8-2.0-0.7-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.3-0.50.40.5-0.1
Delta time to tail flick, test, before/after SA0.10.10.20.10.5-0.10.4
Tibia length4.211.621.8-4.71.04.7-1.4
Ambulatory time before self-admin2.23.35.4-2.31.62.30.2
Ambulatory time after self-admin0.60.61.0-1.00.41.00.7
Bone: tissue strength0.20.20.30.60.2-0.50.6
Total heroin consumption0.40.51.2-0.01.1-0.00.8
Bone: trabecular number0.50.92.0-0.91.40.80.3
Bone: trabecular spacing0.50.71.7-0.2-1.30.2-0.9
Bone: trabecular thickness2.83.59.2-0.93.00.81.8
Bone: trabecular tissue density0.71.01.4-1.20.01.2-1.1
Water consumed over 24 hours1.41.94.21.30.1-1.32.0
Number of responses in last shaping day0.50.61.0-1.0-0.11.0-0.6