LOC134479943

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134479943 0.09 0.05 5.5e-09 0.04 0.04 0.05 0.04 8.1e-06 1.5e-05 5.5e-06 2.0e-05
2 NAcc gene expression LOC134479943 0.02 0.02 5.7e-04 0.02 0.01 0 -0 3.0e-04 3.8e-02 1.2e-01 4.1e-01
3 Brain gene expression LOC134479943 0.13 0.06 7.9e-14 0.14 0.15 0.14 0.14 3.1e-13 1.6e-13 1.6e-12 2.1e-13
4 PL gene expression LOC134479943 0.04 0.03 5.6e-05 0.04 0.04 0.04 0.04 1.3e-05 7.2e-05 1.3e-05 2.3e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.50.50.4-0.60.7
Area under the delay curve0.30.40.90.70.9-0.00.4
BMI with tail1.03.65.3-2.1-2.31.4-1.6
BMI without tail0.00.10.2-0.1-0.4-0.30.3
Body weight1.56.77.8-2.7-2.82.5-2.4
Weight adjusted by age0.00.00.10.40.0-0.10.2
Bone surface0.30.60.90.91.0-0.40.7
Bone volume0.00.10.10.30.3-0.10.3
Breakpoint value in progressive ratio session0.00.10.2-0.2-0.40.10.2
Number of licking bursts0.41.32.01.41.4-0.80.9
Context. condit. distance diff. score6.57.99.4-3.1-2.92.4-2.9
Locomotion velocity, session 10.30.40.80.70.90.20.1
Locomotion distance, session 13.54.57.02.52.7-1.31.7
Locomotion velocity, session 20.20.20.3-0.4-0.40.5-0.4
Locomotion distance, session 23.14.36.02.42.3-1.42.0
Locomotion velocity, session 30.00.10.2-0.2-0.00.1-0.4
Locomotion distance, session 31.61.83.11.51.7-1.10.9
Stereotopy head waving bouts, day 31.01.21.3-1.1-1.11.1-1.0
Stereotopy head waving duration, day 33.84.75.9-2.3-2.42.0-1.9
Locomotion velocity, session 70.20.20.3-0.4-0.30.5-0.6
Locomotion distance, session 70.10.10.10.10.30.4-0.2
Stereotopy head waving bouts, day 71.82.12.5-1.6-1.41.2-1.5
Stereotopy head waving duration, day 72.12.53.5-1.9-1.81.0-1.5
Locomotion velocity, session 81.41.72.3-1.2-1.21.5-1.3
Locomotion distance, session 80.50.70.9-0.9-0.90.7-0.9
Degree of sensitization distance3.53.85.0-2.1-2.21.7-1.6
Degree of sensitization stereotypy1.31.41.7-1.3-1.21.0-1.3
Conditioned locomotion0.50.60.7-0.8-0.70.7-0.8
Cocaine response after cond. corrected0.10.20.3-0.4-0.50.5-0.4
Cocaine response after cond. not corrected0.10.10.2-0.3-0.40.2-0.1
Cocaine response before conditioning0.40.40.80.50.4-0.90.7
Saline control response0.00.00.20.1-0.0-0.40.1
Bone: connectivity density0.00.00.10.20.1-0.10.2
Bone: cortical apparent density1.11.82.01.41.4-1.41.1
Bone: cortical area1.42.22.5-1.5-1.51.6-1.3
Bone: cortical porosity0.70.71.1-1.0-1.10.5-0.6
Bone: cortical porosity2.02.22.9-1.7-1.71.3-1.2
Bone: cortical thickness0.20.40.5-0.6-0.60.7-0.5
Bone: cortical thickness0.20.30.7-0.4-0.20.9-0.5
Bone: cortical tissue density1.01.71.91.31.4-1.31.0
Condit. Reinf. active minus inactive responses0.30.30.50.60.7-0.40.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.20.3-0.4
Condit. Reinf. active responses1.82.32.41.51.5-1.51.5
Condit. Reinf. inactive responses3.24.14.62.01.8-2.12.1
Incentive salience index mean0.60.70.90.91.0-0.70.8
Condit. Reinf. lever presses0.91.31.51.21.1-1.11.2
Condit. Reinf. active minus inactive responses0.10.20.50.40.70.4-0.1
Condit. Reinf. active-inactive response ratio0.10.20.5-0.10.00.7-0.4
Condit. Reinf. active responses0.30.40.9-0.30.11.0-0.7
Condit. Reinf. inactive responses0.30.51.0-0.5-0.21.0-0.9
Condit. Reinf. lever presses0.30.50.60.80.7-0.50.7
Condit. Reinf. lever reinforcers received0.10.20.5-0.10.20.7-0.5
Conditioned reinforcement - actives0.20.81.6-0.8-0.41.0-1.3
Conditioned reinforcement - inactives0.10.20.30.50.50.10.5
Conditioned locomotion1.72.53.0-1.6-1.51.5-1.7
Patch foraging indifference point 0 sec0.30.71.10.80.4-1.01.1
Patch foraging indifference point AUC0.41.01.91.31.4-0.10.5
Delay disc. indifference point, 0s delay1.01.11.5-1.2-1.20.9-0.8
Delay disc. indifference point, 16s delay1.01.42.51.31.6-0.61.0
Delay disc. indifference point, 2s delay0.10.10.20.20.20.4-0.2
Delay disc. indifference point, 24s delay0.30.40.90.80.90.50.0
Delay disc. indifference point, 4s delay0.10.10.30.40.60.00.2
Delay disc. indifference point, 8s delay0.50.81.51.01.2-0.50.7
Indifference point function ln k0.61.72.8-1.6-1.70.6-1.1
Indifference point function log k0.61.72.8-1.6-1.70.6-1.1
Patch foraging total patch changes 0 sec0.30.91.40.90.6-1.11.2
Patch foraging total patch changes 12 sec0.00.10.20.40.2-0.00.2
Patch foraging total patch changes 18 sec0.10.30.50.70.4-0.10.6
Patch foraging total patch changes 24 sec0.20.50.80.90.8-0.50.7
Patch foraging total patch changes 6 sec0.50.81.51.20.8-0.41.0
Patch foraging time to switch 0 sec0.00.10.2-0.5-0.5-0.10.1
Patch foraging water rate 0 sec0.00.20.30.50.3-0.30.5
Patch foraging water rate 12 sec0.20.91.20.81.0-1.11.0
Patch foraging water rate 18 sec0.71.62.01.41.2-1.11.4
Patch foraging water rate 24 sec0.10.10.2-0.3-0.50.1-0.2
Patch foraging water rate 6 sec1.42.12.41.41.5-1.61.3
Seeking ratio, delayed vs. immediate footshock1.92.73.01.71.5-1.71.7
Distance traveled before self-admin0.20.41.10.50.0-0.41.1
Distance traveled after self-admin0.10.10.30.60.3-0.10.4
Extensor digitorum longus weight0.20.61.20.60.4-1.10.9
Bone: elastic displacement0.00.00.0-0.1-0.00.2-0.2
Bone: elastic work2.73.54.1-2.0-2.01.9-1.6
Bone: endosteal estimation0.51.11.3-1.0-1.11.1-0.9
Bone: endosteal perimeter1.22.93.5-1.9-1.71.7-1.6
Epididymis fat weight2.211.213.3-3.7-3.53.0-3.2
Delta time in closed arm before/after self-admin0.20.10.5-0.2-0.20.7-0.2
Delta time in open arm before/after self-admin0.20.20.30.30.6-0.5-0.2
Diff in mean of infusions in LGA sessions0.10.20.7-0.1-0.40.80.0
Delay discount exponential model param0.30.51.0-0.8-1.00.1-0.4
Extinction: sum of active levers before priming0.91.42.1-1.1-1.11.4-1.0
Active lever presses in extinction session 60.40.40.6-0.6-0.80.5-0.6
Bone: final force1.72.83.8-1.6-1.62.0-1.5
Bone: final moment1.82.94.2-1.6-1.72.0-1.5
Food consumed during 24 hour testing period1.22.53.1-1.5-1.51.8-1.5
Glucose0.10.10.2-0.0-0.5-0.40.4
Heart weight5.58.910.4-3.2-3.22.8-2.7
Delay discount hyperbolic model param0.30.40.9-0.8-0.90.0-0.3
Intermittent access intake day 1-15 change0.10.40.70.40.5-0.90.6
Intermittent access intake escalation0.10.71.00.70.8-1.00.8
Intermittent access intake escalation 20.30.50.90.50.6-0.90.8
Intermitt. access day 1 inactive lever presses0.00.60.9-0.9-0.90.6-0.6
Intermitt. access day 15 inactive lever presses0.00.10.30.40.1-0.20.6
Intermitt. access escalation Index0.30.91.71.00.5-0.81.3
Intermittent access day 1 total infusions0.20.51.5-0.4-0.61.2-0.3
Intermittent access day 15 total infusions0.10.30.50.50.7-0.30.6
Intermittent access terminal intake (last 3 days)0.00.00.10.20.20.00.3
Intermittent access total infusions0.20.20.6-0.2-0.30.8-0.0
Intermittent access day 1 locomotion0.10.20.3-0.3-0.60.4-0.1
Intermittent access day 15 total locomotion0.10.40.6-0.7-0.70.8-0.5
Intermittent access total locomotion0.60.71.0-0.8-0.81.0-0.6
Intermittent access standard deviation0.21.11.9-1.2-1.40.8-0.4
Left kidney weight5.947.149.8-7.1-6.86.8-6.8
Right kidney weight8.357.761.9-7.9-7.77.4-7.4
Cocaine induced anxiety1.02.83.9-1.5-2.01.9-1.3
Post-drug Anxiety0.10.10.2-0.2-0.40.4-0.1
Baseline Anxiety2.54.16.12.02.5-2.01.6
Tail length0.42.12.31.41.4-1.41.5
Length with tail0.20.91.1-0.9-0.81.0-0.9
Length without tail1.78.79.1-3.0-2.93.0-2.9
Times rat made contact with spout0.30.40.9-0.4-0.10.9-0.7
Lifetime Intake0.60.71.8-0.6-0.81.3-0.4
Liver weight, left0.61.11.6-1.1-0.81.0-1.3
Liver weight, right2.13.74.8-2.2-2.01.3-2.0
Locomotor activity2.03.24.0-2.0-1.71.7-1.8
Locomotor testing distance0.00.10.20.20.4-0.30.2
Locomotor testing rearing0.52.02.4-1.5-1.41.3-1.4
Locomotion in novel chamber1.31.73.40.81.5-1.80.6
Locomotion in novel chamber post-restriction0.30.81.20.90.9-1.10.8
Fecal boli incidents, locomotor time 10.00.10.20.50.30.00.3
Change in fecal boli incidents, locomotor task0.40.40.9-0.5-0.00.8-1.0
Time >=10cm from walls, locomotor time 10.60.71.3-0.7-1.10.8-0.6
Bouts of movement, locomotor time 11.01.31.9-1.1-0.81.4-1.2
Total resting periods, locomotor time 10.70.91.3-0.9-0.71.2-0.9
Rest time, locomotor task time 10.71.11.4-1.1-0.91.2-1.1
Distance moved, locomotor task time 10.10.10.2-0.5-0.50.0-0.3
Vertical activity count, locomotor time 10.00.00.10.1-0.2-0.30.2
Time >=10cm from walls, locomotor time 20.00.10.10.3-0.0-0.20.4
Bouts of movement, locomotor time 20.10.40.5-0.5-0.70.4-0.7
Total resting periods, locomotor time 20.10.30.4-0.5-0.60.5-0.6
Rest time, locomotor task time 20.00.10.10.30.40.10.1
Distance moved, locomotor task time 20.30.30.7-0.8-0.60.3-0.6
Vertical activity count, locomotor time 20.10.20.4-0.4-0.60.3-0.3
Light reinforcement 10.00.10.20.20.4-0.10.1
Light reinforcement 20.40.91.4-1.2-1.00.6-0.9
Bone: marrow area0.51.21.5-1.1-1.11.2-1.0
Bone: maximum diameter3.57.07.5-2.7-2.62.7-2.5
Bone: maximum force2.24.35.9-2.0-2.02.4-1.9
Bone: maximum moment2.54.76.5-2.1-2.12.6-2.0
Mean time between licks in bursts0.10.71.10.80.5-1.10.9
Mean num. licks in bursts1.02.73.1-1.7-1.51.6-1.7
Cd content in liver0.80.91.5-0.7-0.41.2-1.2
Co content in liver0.10.10.10.30.30.30.1
Cu content in liver7.28.59.23.02.8-2.73.0
Fe content in liver0.81.02.0-1.0-1.40.8-0.6
K content in liver1.71.71.91.31.4-1.21.3
Mg content in liver1.21.41.61.21.1-1.01.3
Mn content in liver0.10.10.20.30.4-0.20.1
Na content in liver2.12.32.81.51.3-1.61.7
Rb content in liver0.10.10.40.10.10.6-0.2
Se content in liver0.50.60.90.70.7-0.90.7
Sr content in liver2.82.42.91.61.3-1.71.6
Zn content in liver0.20.20.30.60.5-0.20.3
Bone: minimum diameter0.40.81.0-0.9-0.81.0-0.8
Time in familiar zone, hab. session 10.10.20.40.10.30.7-0.4
Time in novel zone, hab. session 10.60.61.3-1.0-1.20.0-0.3
Total zone transitions, hab. session 15.47.611.13.03.3-2.32.2
Total locomotion distance, hab. session 13.04.36.22.22.5-1.91.7
Locomotion velocity, hab. session 13.65.06.92.42.6-2.01.9
Time in familiar zone, hab. session 20.00.00.1-0.00.1-0.4-0.1
Time in novel zone, hab. session 20.00.00.2-0.1-0.10.40.0
Total zone transitions, hab. session 22.22.84.32.02.1-0.91.4
Total locomotion distance, hab. session 21.52.02.61.61.6-1.11.4
Locomotion velocity, hab. session 22.53.34.22.02.0-1.41.8
Novel to familiar place preference ratio2.22.83.3-1.8-1.71.5-1.7
Novelty place preference3.03.84.4-2.1-2.01.8-2.0
Time in novel zone, NPP test3.84.75.3-2.3-2.12.0-2.2
Total zone transitions, NPP test4.97.310.03.13.2-2.12.2
Total locomotion distance, NPP test2.43.44.52.12.1-1.51.6
Locomotion velocity, NPP test3.34.75.92.42.4-1.91.9
Intraocular pressure0.30.50.7-0.6-0.40.8-0.9
Delta distance traveled before/after self-admin0.40.51.0-0.3-0.10.8-1.0
Delta ambulatory time before/after self-admin0.30.50.9-0.3-0.21.0-0.9
Parametrial fat weight0.00.00.1-0.3-0.2-0.1-0.2
Pavlov. Cond. lever latency0.40.60.6-0.8-0.70.8-0.8
Pavlov. Cond. magazine entry latency0.40.60.80.90.8-0.50.7
Pavlov. Cond. change in total contacts1.31.42.01.41.3-0.71.2
Pavlov. Cond. index score0.20.20.30.60.5-0.30.5
Pavlov. Cond. latency score0.20.20.30.50.4-0.40.5
Pavlov. Cond. lever contacts1.41.71.91.41.2-1.31.4
Pavlov. Cond. magazine entry number0.50.61.0-0.9-1.00.5-0.7
Pavlov. Cond. intertrial magazine entries0.91.11.41.21.1-0.91.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.70.7-0.40.6
Pavlov. Cond. response bias0.70.81.11.01.0-0.70.9
Pavlov. Cond. lever latency0.81.11.6-1.0-0.71.2-1.3
Pavlov. Cond. magazine entry latency2.02.83.61.81.6-1.41.9
Pavlov. Cond. change in total contacts0.10.20.60.50.2-0.20.8
Pavlov. Cond. index score1.21.92.51.41.2-1.31.6
Pavlov. Cond. latency score1.72.73.41.71.5-1.51.8
Pavlov. Cond. lever contacts1.01.52.11.10.9-1.31.4
Pavlov. Cond. magazine entry number1.21.61.9-1.3-1.21.1-1.4
Pavlov. Cond. intertrial magazine entries1.22.73.0-1.6-1.51.7-1.7
Pavlov. Cond. lever-magazine prob. diff.1.32.02.81.41.2-1.41.7
Pavlov. Cond. response bias0.91.21.81.10.9-1.01.3
Time in closed arm before self-admin3.15.48.12.31.5-2.42.9
Time in closed arm after self-admin0.00.00.0-0.0-0.20.20.2
Time in open arm before self-admin0.00.00.1-0.10.10.1-0.3
Time in open arm after self-admin0.20.20.40.20.7-0.5-0.3
Bone: periosteal estimation1.12.62.9-1.6-1.71.7-1.4
Bone: periosteal perimeter3.26.27.2-2.7-2.42.4-2.4
Bone: post-yield work0.20.31.0-0.3-0.21.0-0.5
Progressive ratio test 1 active lever presses0.20.31.1-0.1-0.41.00.2
Progressive ratio test 1 breakpoint0.10.30.9-0.0-0.30.90.2
Progressive ratio test 1 inactive lever presses0.10.20.4-0.5-0.50.6-0.3
Progressive ratio test 2 active lever presses0.10.20.70.20.00.80.1
Progressive ratio test 2 breakpoint0.10.20.60.20.10.80.2
Progressive ratio test 2 inactive lever presses0.20.71.00.90.9-0.51.0
Incentive Sensitization - Responses0.10.30.50.70.7-0.20.4
Incentive Sensitization - Breakpoint0.10.10.30.50.5-0.00.2
Sum of active levers in priming session hrs 5-60.10.10.2-0.2-0.40.1-0.1
Progressive ratio0.00.00.1-0.0-0.1-0.20.3
Food seeking constrained by brief footshock1.21.52.1-1.2-0.81.5-1.3
Seeking ratio, punishment vs. effort0.30.71.1-0.7-0.41.0-1.0
Retroperitoneal fat weight5.022.325.3-5.0-4.84.4-4.7
Reaction time number correct0.41.62.11.31.5-1.21.0
Reaction time mean minus median0.00.10.3-0.4-0.60.1-0.2
Reaction time mean minus median AUC0.21.21.7-1.2-1.30.7-1.0
Reaction time num false alarms0.10.10.30.20.2-0.50.4
Reaction time num false alarms AUC0.10.30.50.40.6-0.70.5
Reaction time trials correct on left0.41.62.11.31.5-1.21.0
Reaction time trials on left0.51.82.41.41.5-1.31.1
Reaction time mean0.10.20.30.1-0.0-0.60.5
Reaction time mean AUC0.00.10.20.10.0-0.50.4
Median of all reaction times0.20.30.50.40.2-0.70.7
Reaction time omissions0.30.50.60.70.8-0.60.6
Reaction time false alarm rate0.00.10.1-0.4-0.3-0.1-0.1
Reaction time premature initiation rate0.10.20.40.4-0.0-0.20.7
Reaction time premature initiations0.10.40.60.70.5-0.40.8
Std. dev. reaction times0.10.30.5-0.6-0.70.2-0.4
Reaction time trials completed0.51.82.41.41.5-1.31.1
Reaction time trials AUC0.31.21.61.11.3-1.00.9
Run reversals in cocaine runway, females0.50.60.90.90.8-0.70.7
Run reversals in cocaine runway, males0.60.71.6-0.3-0.41.3-0.9
Latency to leave start box in cocaine runway0.40.61.0-1.0-0.80.4-0.8
Latency to leave start box in cocaine runway, F0.00.00.0-0.00.0-0.20.0
Latency to leave start box in cocaine runway, M1.61.52.4-1.5-1.10.9-1.3
Std. dev. time between licks in bursts1.01.92.41.51.2-1.21.5
Total sessions with >9 infusions3.84.76.6-2.0-2.22.6-1.8
Short access day 1 total inactive lever presses0.40.81.5-0.8-0.61.2-0.9
Short access day 10 total inactive lever presses0.21.01.8-1.1-0.60.8-1.3
Short access day 1 total infusions0.51.01.3-0.9-1.11.1-0.7
Short access day 10 total infusions1.11.82.5-1.4-1.51.6-0.8
Short access total infusions1.72.44.1-1.3-1.72.0-1.0
Short access day 1 locomotion0.30.50.9-0.7-1.00.5-0.3
Short access day 10 total locomotion0.00.10.2-0.3-0.4-0.40.1
Short access total locomotion0.81.32.1-1.2-1.40.9-0.8
One hour access (0.3 mA shock)0.00.00.10.10.2-0.20.2
Compulsive drug intake0.40.51.30.81.1-0.2-0.3
One hour access (shock baseline)0.00.10.3-0.3-0.4-0.10.5
Social response proportion0.40.41.1-0.8-1.1-0.0-0.2
Social responses0.10.20.30.50.5-0.20.3
Social time1.72.73.11.71.8-1.61.6
Soleus weight0.20.61.01.01.0-0.30.5
Bone: stiffness1.42.52.9-1.6-1.71.7-1.3
Tibialis anterior weight0.62.02.41.61.3-1.31.5
Time to tail flick, vehicle, before self-admin0.00.00.0-0.0-0.10.10.1
Time to tail flick, vehicle, after self-admin0.71.31.61.21.2-1.11.0
Time to tail flick, test, before self-admin0.60.61.1-0.8-0.50.8-1.0
Time to tail flick, test, after self-admin0.50.50.80.70.6-0.60.9
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.0-0.00.0-0.0
Delta time to tail flick, test, before/after SA3.03.74.61.91.6-1.92.1
Tibia length0.82.23.5-1.2-1.21.9-1.5
Ambulatory time before self-admin0.30.81.50.90.6-0.71.2
Ambulatory time after self-admin1.11.72.51.61.4-1.01.2
Bone: tissue strength0.20.20.2-0.4-0.40.5-0.4
Total heroin consumption0.20.20.8-0.1-0.40.9-0.1
Bone: trabecular number0.00.00.0-0.00.1-0.1-0.0
Bone: trabecular spacing1.42.03.2-1.3-1.11.8-1.4
Bone: trabecular thickness0.30.40.80.40.0-0.90.8
Bone: trabecular tissue density1.62.73.61.61.1-1.91.9
Water consumed over 24 hours0.20.40.8-0.4-0.20.9-0.6
Number of responses in last shaping day0.60.72.00.70.2-0.61.4