LOC134479860

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134479860 0.1 0.05 9.2e-05 0.02 0.03 0.03 0.03 9.0e-04 2.2e-04 8.3e-04 3.5e-04
2 NAcc gene expression LOC134479860 0.1 0.04 4.3e-10 0.06 0.06 0.05 0.06 1.3e-09 9.0e-09 1.2e-08 8.3e-09
3 Brain gene expression LOC134479860 0.12 0.05 1.1e-08 0.09 0.08 0.08 0.09 9.0e-09 4.9e-08 7.6e-08 7.4e-09
4 pVTA gene expression LOC134479860 0.13 0.07 5.5e-07 0.1 0.1 0.1 0.1 3.5e-08 1.0e-08 4.0e-08 4.4e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.51.51.20.3-0.6-0.5
Area under the delay curve1.72.73.6-0.1-1.91.91.8
BMI with tail0.62.26.7-1.1-0.12.61.0
BMI without tail0.31.83.2-1.81.70.9-0.6
Body weight1.98.318.5-4.33.11.9-1.1
Weight adjusted by age0.30.91.70.40.5-1.3-1.2
Bone surface0.10.10.30.1-0.10.60.3
Bone volume0.00.10.20.50.00.30.0
Breakpoint value in progressive ratio session1.12.13.61.9-1.71.00.9
Number of licking bursts0.10.20.40.50.20.60.4
Context. condit. distance diff. score1.11.34.7-2.20.10.50.4
Locomotion velocity, session 10.40.51.21.1-0.4-0.6-0.5
Locomotion distance, session 10.10.20.40.6-0.40.3-0.1
Locomotion velocity, session 20.10.10.30.10.1-0.5-0.5
Locomotion distance, session 20.10.10.50.1-0.20.70.0
Locomotion velocity, session 30.10.10.3-0.1-0.1-0.6-0.4
Locomotion distance, session 30.40.50.8-0.8-0.40.90.5
Stereotopy head waving bouts, day 31.01.23.71.90.0-0.9-0.5
Stereotopy head waving duration, day 31.01.22.41.50.2-1.2-0.9
Locomotion velocity, session 70.30.41.2-1.10.10.40.2
Locomotion distance, session 70.20.20.4-0.6-0.40.40.3
Stereotopy head waving bouts, day 70.91.11.41.00.8-1.2-1.1
Stereotopy head waving duration, day 70.80.91.81.30.6-1.0-0.8
Locomotion velocity, session 80.60.71.1-0.60.8-1.1-0.9
Locomotion distance, session 81.11.65.1-2.30.21.10.2
Degree of sensitization distance0.10.10.30.5-0.3-0.10.1
Degree of sensitization stereotypy0.40.40.70.80.3-0.7-0.5
Conditioned locomotion0.10.10.2-0.3-0.10.30.4
Cocaine response after cond. corrected0.00.00.00.0-0.10.10.1
Cocaine response after cond. not corrected0.00.00.0-0.1-0.00.10.1
Cocaine response before conditioning0.00.00.1-0.30.2-0.2-0.2
Saline control response0.50.70.9-0.90.9-0.6-0.8
Bone: connectivity density0.61.01.91.40.4-1.1-0.9
Bone: cortical apparent density0.40.72.0-1.40.80.1-0.1
Bone: cortical area0.10.10.5-0.10.10.70.0
Bone: cortical porosity0.10.20.40.30.2-0.7-0.3
Bone: cortical porosity0.10.10.20.5-0.0-0.5-0.1
Bone: cortical thickness0.20.30.4-0.10.6-0.4-0.7
Bone: cortical thickness0.40.51.61.3-0.4-0.40.1
Bone: cortical tissue density0.50.82.4-1.50.90.0-0.2
Condit. Reinf. active minus inactive responses0.10.10.20.5-0.2-0.40.2
Condit. Reinf. active-inactive response ratio0.30.30.50.7-0.60.20.6
Condit. Reinf. active responses0.50.61.81.3-0.2-0.80.1
Condit. Reinf. inactive responses0.60.72.41.5-0.3-0.70.0
Incentive salience index mean0.30.40.80.60.5-0.9-0.5
Condit. Reinf. lever presses0.50.71.00.51.0-0.9-0.9
Condit. Reinf. active minus inactive responses0.00.10.10.3-0.2-0.2-0.1
Condit. Reinf. active-inactive response ratio0.20.30.60.20.2-0.8-0.7
Condit. Reinf. active responses0.10.10.10.4-0.40.30.2
Condit. Reinf. inactive responses0.50.71.10.6-0.90.81.0
Condit. Reinf. lever presses0.10.20.50.70.0-0.2-0.4
Condit. Reinf. lever reinforcers received0.20.20.40.3-0.50.60.4
Conditioned reinforcement - actives0.41.62.50.11.3-1.5-1.6
Conditioned reinforcement - inactives0.20.40.50.70.6-0.7-0.7
Conditioned locomotion0.60.81.4-0.40.9-0.9-1.2
Patch foraging indifference point 0 sec0.00.10.20.20.5-0.3-0.2
Patch foraging indifference point AUC0.41.01.50.41.2-1.0-1.1
Delay disc. indifference point, 0s delay0.91.02.71.6-0.90.50.4
Delay disc. indifference point, 16s delay3.04.27.2-0.3-2.12.72.2
Delay disc. indifference point, 2s delay0.30.30.6-0.7-0.60.60.2
Delay disc. indifference point, 24s delay0.91.52.5-0.6-1.31.61.2
Delay disc. indifference point, 4s delay0.10.10.2-0.1-0.50.10.3
Delay disc. indifference point, 8s delay1.62.73.90.2-2.01.72.0
Indifference point function ln k0.20.71.1-0.3-0.91.10.9
Indifference point function log k0.20.71.1-0.3-0.91.10.9
Patch foraging total patch changes 0 sec0.00.10.20.40.4-0.4-0.3
Patch foraging total patch changes 12 sec1.82.43.70.51.9-1.6-1.8
Patch foraging total patch changes 18 sec1.22.95.0-0.42.2-1.8-1.8
Patch foraging total patch changes 24 sec0.51.62.8-0.71.7-1.1-1.4
Patch foraging total patch changes 6 sec0.10.20.40.60.6-0.3-0.3
Patch foraging time to switch 0 sec0.00.10.4-0.70.2-0.10.1
Patch foraging water rate 0 sec0.10.50.9-0.90.50.90.0
Patch foraging water rate 12 sec0.21.02.0-0.81.4-0.1-1.1
Patch foraging water rate 18 sec0.10.31.00.1-0.31.00.3
Patch foraging water rate 24 sec0.91.33.6-1.90.51.2-0.1
Patch foraging water rate 6 sec1.11.62.8-1.70.91.6-0.2
Seeking ratio, delayed vs. immediate footshock0.30.41.41.2-0.1-0.2-0.4
Distance traveled before self-admin0.00.10.20.2-0.20.4-0.1
Distance traveled after self-admin1.01.72.40.6-1.61.51.4
Extensor digitorum longus weight0.00.20.40.2-0.20.60.5
Bone: elastic displacement1.01.22.61.6-1.3-0.60.5
Bone: elastic work0.81.02.21.5-1.2-0.70.3
Bone: endosteal estimation2.35.710.7-0.1-2.23.32.7
Bone: endosteal perimeter1.33.16.9-1.2-1.02.61.7
Epididymis fat weight0.31.42.9-1.50.71.70.1
Delta time in closed arm before/after self-admin0.20.20.4-0.70.20.4-0.0
Delta time in open arm before/after self-admin1.21.54.42.1-1.1-0.10.6
Diff in mean of infusions in LGA sessions0.10.20.50.7-0.3-0.4-0.2
Delay discount exponential model param1.62.23.00.31.7-1.7-1.7
Extinction: sum of active levers before priming0.20.20.40.1-0.60.60.4
Active lever presses in extinction session 60.60.61.00.5-0.91.00.6
Bone: final force0.81.32.80.2-1.01.71.2
Bone: final moment0.60.91.90.5-0.91.40.9
Food consumed during 24 hour testing period0.30.61.2-0.41.1-0.5-0.9
Glucose0.10.20.60.8-0.10.0-0.3
Heart weight0.61.02.80.1-0.71.70.9
Delay discount hyperbolic model param1.41.82.50.51.5-1.6-1.5
Intermittent access intake day 1-15 change0.42.33.8-0.41.9-1.4-1.7
Intermittent access intake escalation0.42.03.5-0.31.9-1.3-1.6
Intermittent access intake escalation 20.71.11.9-0.71.4-1.0-1.1
Intermitt. access day 1 inactive lever presses0.00.51.61.3-0.5-0.50.2
Intermitt. access day 15 inactive lever presses0.00.10.20.4-0.3-0.2-0.2
Intermitt. access escalation Index0.00.10.20.1-0.1-0.4-0.2
Intermittent access day 1 total infusions0.41.24.5-2.10.50.3-0.1
Intermittent access day 15 total infusions0.61.63.0-1.71.4-0.4-1.0
Intermittent access terminal intake (last 3 days)0.81.44.1-2.01.0-0.0-0.5
Intermittent access total infusions1.01.24.1-2.00.70.3-0.2
Intermittent access day 1 locomotion0.40.83.1-1.70.20.20.1
Intermittent access day 15 total locomotion0.52.02.5-1.01.6-1.5-1.5
Intermittent access total locomotion0.70.92.9-1.70.7-0.1-0.4
Intermittent access standard deviation0.31.83.1-1.31.8-0.9-1.3
Left kidney weight0.43.66.1-2.12.5-0.1-2.0
Right kidney weight0.31.93.5-1.91.31.4-0.6
Cocaine induced anxiety0.61.82.71.3-1.60.81.4
Post-drug Anxiety0.50.61.10.8-1.00.30.7
Baseline Anxiety0.71.21.5-1.21.1-0.7-1.2
Tail length2.814.923.2-4.74.8-1.7-3.5
Length with tail3.817.028.5-5.35.2-0.8-3.4
Length without tail0.84.29.4-3.12.30.8-1.2
Times rat made contact with spout2.42.75.4-0.42.3-1.2-2.0
Lifetime Intake1.01.24.3-2.10.60.4-0.0
Liver weight, left2.13.76.2-2.02.5-0.7-2.0
Liver weight, right1.93.25.9-0.92.4-1.2-2.2
Locomotor activity0.50.81.4-1.20.91.0-0.4
Locomotor testing distance0.51.13.2-1.00.01.80.5
Locomotor testing rearing0.00.20.5-0.70.40.2-0.3
Locomotion in novel chamber0.30.41.2-1.1-0.20.40.4
Locomotion in novel chamber post-restriction0.10.20.5-0.70.4-0.2-0.3
Fecal boli incidents, locomotor time 10.00.10.2-0.20.4-0.2-0.1
Change in fecal boli incidents, locomotor task1.81.92.7-0.8-1.61.41.6
Time >=10cm from walls, locomotor time 11.21.52.60.3-1.61.11.4
Bouts of movement, locomotor time 11.01.34.32.1-0.70.30.7
Total resting periods, locomotor time 11.01.14.12.0-0.5-0.20.3
Rest time, locomotor task time 10.60.92.81.7-0.3-0.9-0.1
Distance moved, locomotor task time 10.20.71.1-1.11.0-0.1-0.7
Vertical activity count, locomotor time 10.21.33.5-1.90.61.1-0.1
Time >=10cm from walls, locomotor time 20.41.22.11.10.7-1.4-0.9
Bouts of movement, locomotor time 20.10.40.70.1-0.80.60.8
Total resting periods, locomotor time 20.20.91.60.4-1.30.91.1
Rest time, locomotor task time 21.11.83.11.0-1.81.21.4
Distance moved, locomotor task time 22.02.74.00.12.0-1.7-1.9
Vertical activity count, locomotor time 20.92.04.4-0.42.1-0.7-1.8
Light reinforcement 10.00.20.40.10.6-0.1-0.6
Light reinforcement 20.30.61.00.4-0.60.91.0
Bone: marrow area2.35.710.8-0.1-2.23.32.7
Bone: maximum diameter0.81.64.8-0.8-0.42.21.0
Bone: maximum force0.71.52.60.4-1.31.61.2
Bone: maximum moment0.61.21.80.8-1.21.31.0
Mean time between licks in bursts0.10.30.6-0.0-0.60.80.7
Mean num. licks in bursts0.30.81.4-0.60.8-1.0-1.2
Cd content in liver0.60.71.11.0-0.80.80.7
Co content in liver0.10.10.2-0.40.20.20.0
Cu content in liver0.30.40.40.60.6-0.6-0.6
Fe content in liver1.31.62.5-0.7-1.11.61.4
K content in liver4.64.57.10.22.5-2.7-2.2
Mg content in liver1.11.22.20.61.1-1.5-1.0
Mn content in liver0.10.10.1-0.30.20.30.3
Na content in liver0.60.61.00.01.0-1.0-0.8
Rb content in liver0.30.31.10.4-0.0-1.1-0.2
Se content in liver0.50.61.0-0.5-0.41.00.9
Sr content in liver1.91.72.51.60.5-1.4-1.4
Zn content in liver2.83.35.2-1.22.3-1.4-2.0
Bone: minimum diameter1.22.36.0-1.4-0.32.50.9
Time in familiar zone, hab. session 10.20.20.40.2-0.60.50.5
Time in novel zone, hab. session 10.60.71.3-0.6-0.70.91.2
Total zone transitions, hab. session 10.30.41.2-0.00.7-0.0-1.1
Total locomotion distance, hab. session 10.91.23.00.01.2-0.6-1.7
Locomotion velocity, hab. session 11.72.45.30.11.8-1.1-2.3
Time in familiar zone, hab. session 20.00.00.00.1-0.1-0.00.2
Time in novel zone, hab. session 20.70.81.20.3-1.11.00.9
Total zone transitions, hab. session 20.20.30.8-0.0-0.50.90.3
Total locomotion distance, hab. session 20.10.10.20.4-0.00.4-0.2
Locomotion velocity, hab. session 20.10.10.10.30.00.4-0.3
Novel to familiar place preference ratio1.01.22.00.01.1-1.4-1.4
Novelty place preference1.01.32.30.20.9-1.5-1.4
Time in novel zone, NPP test0.70.81.40.10.8-1.2-1.1
Total zone transitions, NPP test0.20.30.8-0.0-0.50.90.3
Total locomotion distance, NPP test0.10.10.40.10.30.1-0.6
Locomotion velocity, NPP test0.10.20.50.10.4-0.1-0.7
Intraocular pressure0.20.30.40.6-0.60.40.5
Delta distance traveled before/after self-admin0.30.40.60.5-0.60.50.7
Delta ambulatory time before/after self-admin0.61.11.70.8-1.20.71.3
Parametrial fat weight1.63.76.20.5-1.82.52.2
Pavlov. Cond. lever latency1.41.72.8-1.0-1.11.71.4
Pavlov. Cond. magazine entry latency0.00.00.10.20.1-0.0-0.0
Pavlov. Cond. change in total contacts0.00.00.10.10.30.2-0.2
Pavlov. Cond. index score0.40.51.11.10.4-0.6-0.5
Pavlov. Cond. latency score0.70.91.51.20.6-1.0-0.9
Pavlov. Cond. lever contacts1.41.72.41.01.1-1.5-1.4
Pavlov. Cond. magazine entry number0.10.10.3-0.10.2-0.6-0.4
Pavlov. Cond. intertrial magazine entries2.63.24.6-1.3-1.32.12.1
Pavlov. Cond. lever-magazine prob. diff.0.30.31.21.10.2-0.3-0.3
Pavlov. Cond. response bias0.20.30.30.50.6-0.6-0.5
Pavlov. Cond. lever latency0.30.51.00.00.6-1.0-0.7
Pavlov. Cond. magazine entry latency0.40.62.1-1.50.5-0.1-0.3
Pavlov. Cond. change in total contacts0.71.73.6-1.9-0.11.60.7
Pavlov. Cond. index score0.50.82.5-1.60.30.60.2
Pavlov. Cond. latency score0.40.62.1-1.50.20.60.2
Pavlov. Cond. lever contacts0.50.71.8-0.1-0.71.30.8
Pavlov. Cond. magazine entry number0.91.13.41.9-0.3-0.9-0.3
Pavlov. Cond. intertrial magazine entries0.20.41.11.1-0.2-0.5-0.3
Pavlov. Cond. lever-magazine prob. diff.0.60.93.1-1.80.50.4-0.1
Pavlov. Cond. response bias0.40.51.3-0.7-0.31.10.6
Time in closed arm before self-admin0.20.40.8-0.90.5-0.3-0.5
Time in closed arm after self-admin0.20.30.5-0.6-0.10.70.4
Time in open arm before self-admin0.10.10.40.6-0.20.20.3
Time in open arm after self-admin1.31.43.51.9-1.20.10.8
Bone: periosteal estimation1.53.57.7-0.5-1.52.82.0
Bone: periosteal perimeter0.81.73.7-0.5-0.91.91.3
Bone: post-yield work0.20.40.9-0.2-0.51.00.5
Progressive ratio test 1 active lever presses1.83.17.9-2.81.7-0.2-1.2
Progressive ratio test 1 breakpoint1.93.27.9-2.81.8-0.3-1.3
Progressive ratio test 1 inactive lever presses0.00.10.1-0.30.4-0.2-0.2
Progressive ratio test 2 active lever presses1.31.92.7-1.51.6-0.9-1.3
Progressive ratio test 2 breakpoint1.62.12.9-1.61.7-1.0-1.3
Progressive ratio test 2 inactive lever presses0.20.71.1-0.30.8-1.0-1.0
Incentive Sensitization - Responses0.61.52.6-0.91.6-1.2-1.2
Incentive Sensitization - Breakpoint0.61.42.3-0.81.5-1.2-1.1
Sum of active levers in priming session hrs 5-61.21.22.00.81.0-1.0-1.4
Progressive ratio0.51.52.2-1.0-1.40.91.5
Food seeking constrained by brief footshock1.92.36.7-2.61.4-0.5-0.7
Seeking ratio, punishment vs. effort0.61.42.50.01.6-0.9-1.5
Retroperitoneal fat weight0.31.53.1-1.81.40.8-0.6
Reaction time number correct0.10.40.70.3-0.70.80.6
Reaction time mean minus median0.10.72.11.5-0.6-0.6-0.4
Reaction time mean minus median AUC0.11.02.21.5-0.2-1.0-0.8
Reaction time num false alarms0.30.61.71.30.0-0.7-0.1
Reaction time num false alarms AUC0.30.82.71.6-0.4-0.50.2
Reaction time trials correct on left0.10.40.70.3-0.70.80.6
Reaction time trials on left0.10.50.70.4-0.70.80.7
Reaction time mean0.20.40.70.1-0.70.80.5
Reaction time mean AUC0.10.20.3-0.0-0.50.60.3
Median of all reaction times0.40.61.5-0.6-0.61.20.7
Reaction time omissions1.11.83.01.6-1.70.41.1
Reaction time false alarm rate0.30.41.21.1-0.1-0.70.0
Reaction time premature initiation rate0.81.33.01.7-0.71.20.5
Reaction time premature initiations0.31.02.81.7-0.51.00.3
Std. dev. reaction times0.20.82.41.5-0.8-0.4-0.1
Reaction time trials completed0.10.50.70.4-0.70.80.7
Reaction time trials AUC0.20.51.00.3-0.71.00.7
Run reversals in cocaine runway, females0.10.10.20.10.1-0.1-0.5
Run reversals in cocaine runway, males0.10.10.3-0.00.3-0.4-0.5
Latency to leave start box in cocaine runway0.10.10.3-0.10.5-0.1-0.4
Latency to leave start box in cocaine runway, F0.10.20.20.3-0.40.40.4
Latency to leave start box in cocaine runway, M1.61.62.4-0.31.6-1.2-1.5
Std. dev. time between licks in bursts0.61.22.00.5-1.41.01.2
Total sessions with >9 infusions0.70.92.5-1.60.90.2-0.3
Short access day 1 total inactive lever presses0.10.10.2-0.2-0.30.40.5
Short access day 10 total inactive lever presses0.11.02.21.5-0.9-0.9-0.1
Short access day 1 total infusions0.30.61.2-1.1-0.50.70.6
Short access day 10 total infusions0.71.13.8-1.90.60.40.0
Short access total infusions0.50.72.7-1.60.20.40.1
Short access day 1 locomotion0.20.40.6-0.30.8-0.4-0.8
Short access day 10 total locomotion0.10.50.9-0.5-0.70.50.9
Short access total locomotion0.71.11.8-0.81.3-0.9-1.1
One hour access (0.3 mA shock)3.74.47.4-2.72.4-1.0-1.8
Compulsive drug intake0.50.71.0-0.60.9-1.0-0.8
One hour access (shock baseline)0.82.13.1-1.71.7-0.7-1.4
Social response proportion0.40.51.7-0.1-0.41.30.5
Social responses0.10.10.30.50.00.5-0.2
Social time0.30.51.10.70.7-0.4-1.0
Soleus weight0.61.82.90.8-1.31.71.4
Bone: stiffness1.12.15.7-0.2-0.82.41.3
Tibialis anterior weight0.93.14.50.9-1.81.92.1
Time to tail flick, vehicle, before self-admin2.53.15.2-0.32.3-1.4-2.3
Time to tail flick, vehicle, after self-admin0.30.61.21.1-0.90.10.6
Time to tail flick, test, before self-admin1.01.11.7-0.8-0.61.31.3
Time to tail flick, test, after self-admin0.20.20.4-0.4-0.30.60.3
Delta time to tail flick, vehicle, before/after SA2.22.44.40.7-2.11.01.9
Delta time to tail flick, test, before/after SA0.50.71.00.70.3-1.0-1.0
Tibia length2.36.414.7-3.82.80.4-1.7
Ambulatory time before self-admin0.00.10.40.30.3-0.1-0.6
Ambulatory time after self-admin0.71.21.60.6-1.21.31.1
Bone: tissue strength0.20.20.50.2-0.30.70.4
Total heroin consumption2.52.93.91.5-2.01.81.5
Bone: trabecular number0.30.51.41.20.2-0.6-0.4
Bone: trabecular spacing0.10.10.40.0-0.1-0.7-0.4
Bone: trabecular thickness0.30.40.60.40.8-0.5-0.7
Bone: trabecular tissue density0.10.20.5-0.70.40.1-0.0
Water consumed over 24 hours0.81.53.4-0.31.8-0.9-1.3
Number of responses in last shaping day0.30.41.5-1.20.2-0.3-0.2