LOC134479757

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC134479757 0.04 0.02 4.1e-04 0.03 0.02 0.02 0.02 1.5e-04 1.6e-03 3.7e-03 1.3e-03
2 IC gene expression LOC134479757 0.06 0.04 7.4e-03 0.02 0.02 0.01 0.01 4.1e-02 3.2e-02 9.2e-02 9.3e-02
3 NAcc gene expression LOC134479757 0.26 0.11 0.0e+00 0.15 0.1 0.17 0.16 5.7e-22 1.0e-14 6.3e-25 2.3e-23
4 Adipose gene expression LOC134479757 0.2 0.08 0.0e+00 0.14 0.15 0.14 0.15 3.5e-15 3.4e-16 2.2e-15 4.2e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.1-0.4-0.0-0.20.3
Area under the delay curve0.91.02.1-0.9-0.2-1.01.4
BMI with tail1.45.05.72.31.92.4-2.3
BMI without tail0.10.20.40.40.30.5-0.6
Body weight1.67.28.52.82.62.9-2.4
Weight adjusted by age0.10.10.2-0.0-0.5-0.10.3
Bone surface0.40.81.7-1.0-0.3-0.71.3
Bone volume0.00.10.1-0.30.1-0.20.4
Breakpoint value in progressive ratio session0.10.20.30.40.60.3-0.3
Number of licking bursts1.11.72.7-1.4-1.1-1.01.6
Context. condit. distance diff. score5.56.68.52.91.72.6-2.9
Locomotion velocity, session 10.80.92.1-0.9-0.2-0.71.5
Locomotion distance, session 15.06.29.1-2.7-1.7-2.53.0
Locomotion velocity, session 20.20.20.40.40.60.5-0.3
Locomotion distance, session 23.34.68.0-2.3-1.0-2.02.8
Locomotion velocity, session 30.10.10.30.0-0.60.1-0.1
Locomotion distance, session 33.03.24.2-1.7-2.0-1.61.7
Stereotopy head waving bouts, day 31.11.32.11.11.51.1-0.7
Stereotopy head waving duration, day 34.55.46.12.42.52.3-2.1
Locomotion velocity, session 70.10.10.20.30.10.4-0.2
Locomotion distance, session 70.10.10.4-0.30.1-0.30.6
Stereotopy head waving bouts, day 71.51.72.11.40.71.4-1.5
Stereotopy head waving duration, day 72.42.95.11.80.91.6-2.3
Locomotion velocity, session 81.21.52.11.21.41.4-0.6
Locomotion distance, session 80.50.71.10.90.40.8-1.0
Degree of sensitization distance4.85.06.12.22.52.0-2.2
Degree of sensitization stereotypy1.11.11.61.20.51.2-1.3
Conditioned locomotion0.40.40.60.70.50.5-0.8
Cocaine response after cond. corrected0.20.20.30.50.60.3-0.3
Cocaine response after cond. not corrected0.10.20.30.40.40.2-0.5
Cocaine response before conditioning0.20.20.5-0.4-0.7-0.5-0.1
Saline control response0.10.20.40.0-0.6-0.5-0.4
Bone: connectivity density0.00.00.1-0.10.20.10.2
Bone: cortical apparent density1.42.03.2-1.4-1.8-1.01.2
Bone: cortical area1.62.54.01.52.01.6-1.1
Bone: cortical porosity1.21.32.21.11.00.8-1.5
Bone: cortical porosity2.72.93.41.71.81.5-1.9
Bone: cortical thickness0.40.61.10.61.01.0-0.2
Bone: cortical thickness0.40.41.10.21.00.70.4
Bone: cortical tissue density1.41.93.1-1.4-1.8-1.01.2
Condit. Reinf. active minus inactive responses0.30.40.8-0.7-0.4-0.30.9
Condit. Reinf. active-inactive response ratio0.10.10.20.2-0.00.4-0.2
Condit. Reinf. active responses1.41.72.2-1.5-1.3-1.31.2
Condit. Reinf. inactive responses2.43.04.2-1.8-1.7-2.01.2
Incentive salience index mean0.60.71.2-1.0-0.6-0.61.1
Condit. Reinf. lever presses0.71.01.2-1.1-0.8-1.01.0
Condit. Reinf. active minus inactive responses0.50.61.8-0.70.3-0.11.4
Condit. Reinf. active-inactive response ratio0.30.40.7-0.00.80.60.7
Condit. Reinf. active responses0.20.30.6-0.10.60.40.8
Condit. Reinf. inactive responses0.10.10.30.20.50.30.2
Condit. Reinf. lever presses0.30.40.6-0.7-0.3-0.50.8
Condit. Reinf. lever reinforcers received0.20.20.5-0.20.50.20.7
Conditioned reinforcement - actives0.20.30.50.40.60.70.2
Conditioned reinforcement - inactives0.30.40.8-0.50.5-0.40.9
Conditioned locomotion1.92.43.71.51.91.7-0.9
Patch foraging indifference point 0 sec0.10.10.2-0.4-0.2-0.50.4
Patch foraging indifference point AUC1.52.24.7-1.4-0.8-1.32.2
Delay disc. indifference point, 0s delay1.51.72.21.21.50.9-1.5
Delay disc. indifference point, 16s delay2.02.23.4-1.6-0.8-1.51.9
Delay disc. indifference point, 2s delay0.20.20.5-0.20.3-0.30.7
Delay disc. indifference point, 24s delay1.31.54.3-0.9-0.2-0.82.1
Delay disc. indifference point, 4s delay0.40.41.0-0.60.1-0.51.0
Delay disc. indifference point, 8s delay1.31.52.5-1.2-0.7-1.31.6
Indifference point function ln k1.42.43.91.70.71.6-2.0
Indifference point function log k1.42.43.91.70.71.6-2.0
Patch foraging total patch changes 0 sec0.10.30.4-0.6-0.4-0.70.5
Patch foraging total patch changes 12 sec0.10.10.3-0.20.1-0.30.6
Patch foraging total patch changes 18 sec0.20.40.8-0.40.4-0.60.9
Patch foraging total patch changes 24 sec0.40.81.2-0.8-0.4-1.11.0
Patch foraging total patch changes 6 sec0.60.92.2-0.80.2-0.81.5
Patch foraging time to switch 0 sec0.30.51.50.50.60.1-1.2
Patch foraging water rate 0 sec0.10.10.4-0.3-0.1-0.20.7
Patch foraging water rate 12 sec0.30.71.0-1.0-1.0-0.70.5
Patch foraging water rate 18 sec0.81.21.6-1.2-0.8-1.11.3
Patch foraging water rate 24 sec0.20.20.30.50.30.5-0.5
Patch foraging water rate 6 sec1.52.23.6-1.5-1.9-1.21.2
Seeking ratio, delayed vs. immediate footshock1.51.82.1-1.5-1.3-1.31.3
Distance traveled before self-admin0.00.00.1-0.00.1-0.4-0.0
Distance traveled after self-admin0.20.30.6-0.30.6-0.20.8
Extensor digitorum longus weight0.10.20.4-0.4-0.7-0.6-0.2
Bone: elastic displacement0.00.00.10.00.00.30.0
Bone: elastic work3.24.15.52.02.31.9-1.8
Bone: endosteal estimation0.51.22.21.11.50.5-1.0
Bone: endosteal perimeter1.32.73.31.71.81.4-1.7
Epididymis fat weight3.110.512.13.52.93.1-3.4
Delta time in closed arm before/after self-admin0.10.10.20.20.50.40.2
Delta time in open arm before/after self-admin0.40.40.8-0.6-0.5-0.90.4
Diff in mean of infusions in LGA sessions0.20.30.50.40.70.60.4
Delay discount exponential model param1.11.22.51.00.31.1-1.6
Extinction: sum of active levers before priming1.11.32.61.11.61.0-0.6
Active lever presses in extinction session 60.50.50.60.80.80.6-0.7
Bone: final force1.93.15.71.62.41.7-1.0
Bone: final moment2.03.26.21.72.51.8-0.9
Food consumed during 24 hour testing period1.92.64.01.52.01.8-1.0
Glucose0.20.20.60.50.30.3-0.8
Heart weight6.49.911.53.23.43.1-2.8
Delay discount hyperbolic model param0.91.12.20.90.31.0-1.5
Intermittent access intake day 1-15 change0.10.20.5-0.5-0.7-0.3-0.0
Intermittent access intake escalation0.30.51.0-0.8-1.0-0.60.3
Intermittent access intake escalation 20.30.30.6-0.6-0.8-0.5-0.1
Intermitt. access day 1 inactive lever presses0.31.21.70.91.31.1-0.9
Intermitt. access day 15 inactive lever presses0.00.00.1-0.10.30.10.3
Intermitt. access escalation Index0.30.40.6-0.5-0.7-0.70.6
Intermittent access day 1 total infusions0.40.61.80.61.30.4-0.0
Intermittent access day 15 total infusions0.20.40.5-0.7-0.3-0.70.7
Intermittent access terminal intake (last 3 days)0.00.10.1-0.2-0.1-0.40.1
Intermittent access total infusions0.20.30.90.31.00.00.0
Intermittent access day 1 locomotion0.30.41.20.61.10.3-0.3
Intermittent access day 15 total locomotion0.30.61.40.71.20.5-0.5
Intermittent access total locomotion0.70.92.20.81.50.6-0.5
Intermittent access standard deviation1.02.23.31.41.61.1-1.8
Left kidney weight9.041.748.76.86.57.0-5.4
Right kidney weight11.853.661.37.77.47.8-6.3
Cocaine induced anxiety2.23.13.92.01.91.7-1.4
Post-drug Anxiety0.10.10.20.40.20.4-0.2
Baseline Anxiety4.55.26.1-2.5-2.4-2.22.1
Tail length0.41.82.1-1.4-1.4-1.50.9
Length with tail0.10.60.80.80.70.9-0.6
Length without tail2.47.98.92.93.03.0-2.3
Times rat made contact with spout0.20.30.50.10.60.70.4
Lifetime Intake0.70.92.60.81.60.6-0.1
Liver weight, left0.30.50.80.80.10.6-0.9
Liver weight, right2.03.46.42.00.41.7-2.5
Locomotor activity1.82.83.11.71.61.8-1.7
Locomotor testing distance0.00.10.2-0.4-0.3-0.20.2
Locomotor testing rearing0.91.72.01.41.21.3-1.4
Locomotion in novel chamber1.62.14.3-1.5-2.1-1.10.7
Locomotion in novel chamber post-restriction0.50.91.3-0.9-1.2-1.10.5
Fecal boli incidents, locomotor time 10.20.30.7-0.30.3-0.60.8
Change in fecal boli incidents, locomotor task0.20.20.50.0-0.20.70.6
Time >=10cm from walls, locomotor time 10.80.81.31.11.00.7-0.7
Bouts of movement, locomotor time 10.60.70.90.81.00.9-0.7
Total resting periods, locomotor time 10.50.61.00.71.00.8-0.5
Rest time, locomotor task time 10.91.11.60.91.31.2-0.6
Distance moved, locomotor task time 10.20.30.80.5-0.10.2-0.9
Vertical activity count, locomotor time 10.00.00.10.2-0.1-0.2-0.3
Time >=10cm from walls, locomotor time 20.00.00.00.00.10.00.2
Bouts of movement, locomotor time 20.30.40.60.70.50.8-0.6
Total resting periods, locomotor time 20.20.30.40.60.60.6-0.3
Rest time, locomotor task time 20.20.20.7-0.4-0.1-0.20.8
Distance moved, locomotor task time 20.40.51.30.60.20.7-1.1
Vertical activity count, locomotor time 20.20.30.40.60.50.3-0.6
Light reinforcement 10.00.10.2-0.4-0.1-0.20.3
Light reinforcement 20.71.12.01.00.41.2-1.4
Bone: marrow area0.61.32.51.11.60.6-1.1
Bone: maximum diameter3.76.910.02.63.22.6-2.0
Bone: maximum force2.64.68.82.03.02.1-1.1
Bone: maximum moment2.95.09.62.13.12.2-1.2
Mean time between licks in bursts0.10.30.7-0.5-0.8-0.60.2
Mean num. licks in bursts1.42.12.41.51.41.5-1.3
Cd content in liver0.30.30.70.40.50.80.4
Co content in liver0.20.20.6-0.30.40.30.8
Cu content in liver5.36.38.1-2.8-2.2-2.62.4
Fe content in liver1.51.92.81.41.71.0-1.3
K content in liver1.51.41.9-1.4-1.2-1.01.1
Mg content in liver0.80.91.3-1.1-0.7-0.81.0
Mn content in liver0.20.20.5-0.4-0.7-0.30.4
Na content in liver1.31.42.1-1.3-1.1-1.50.9
Rb content in liver0.20.30.5-0.10.70.30.7
Se content in liver0.50.61.3-0.7-1.2-0.60.4
Sr content in liver2.21.93.0-1.3-1.7-1.41.0
Zn content in liver0.20.20.4-0.5-0.4-0.30.6
Bone: minimum diameter0.40.81.60.81.30.6-0.8
Time in familiar zone, hab. session 10.30.30.9-0.30.3-0.10.9
Time in novel zone, hab. session 11.51.53.61.20.50.9-1.9
Total zone transitions, hab. session 17.19.911.1-3.3-3.1-2.93.2
Total locomotion distance, hab. session 14.26.07.0-2.5-2.6-2.42.2
Locomotion velocity, hab. session 14.56.46.9-2.6-2.5-2.52.4
Time in familiar zone, hab. session 20.20.20.5-0.1-0.7-0.4-0.4
Time in novel zone, hab. session 20.20.20.50.10.70.30.3
Total zone transitions, hab. session 22.83.66.6-2.1-1.0-1.62.6
Total locomotion distance, hab. session 21.51.92.9-1.6-0.8-1.31.7
Locomotion velocity, hab. session 22.43.24.5-2.0-1.1-1.82.1
Novel to familiar place preference ratio2.22.43.01.71.21.7-1.6
Novelty place preference2.93.13.82.01.31.9-1.8
Time in novel zone, NPP test3.53.84.62.11.52.1-1.9
Total zone transitions, NPP test6.49.211.5-3.2-2.7-2.83.4
Total locomotion distance, NPP test2.94.05.2-2.1-1.7-1.82.3
Locomotion velocity, NPP test3.75.25.9-2.4-2.0-2.22.4
Intraocular pressure0.10.10.20.40.30.3-0.1
Delta distance traveled before/after self-admin0.30.30.60.10.80.50.6
Delta ambulatory time before/after self-admin0.30.40.80.20.90.50.7
Parametrial fat weight0.10.20.40.2-0.5-0.1-0.6
Pavlov. Cond. lever latency0.40.40.60.70.60.8-0.6
Pavlov. Cond. magazine entry latency0.50.61.1-0.8-0.4-0.71.0
Pavlov. Cond. change in total contacts1.41.53.0-1.3-0.5-1.01.7
Pavlov. Cond. index score0.20.30.6-0.5-0.2-0.50.8
Pavlov. Cond. latency score0.20.20.4-0.4-0.2-0.40.6
Pavlov. Cond. lever contacts1.11.41.9-1.2-1.0-1.41.1
Pavlov. Cond. magazine entry number0.70.91.61.00.60.8-1.3
Pavlov. Cond. intertrial magazine entries0.81.01.6-1.1-0.5-1.01.2
Pavlov. Cond. lever-magazine prob. diff.0.40.50.9-0.7-0.4-0.71.0
Pavlov. Cond. response bias0.70.91.4-1.0-0.6-1.01.2
Pavlov. Cond. lever latency0.20.30.50.70.40.5-0.4
Pavlov. Cond. magazine entry latency1.51.82.7-1.6-0.7-1.31.6
Pavlov. Cond. change in total contacts0.20.20.6-0.20.80.10.6
Pavlov. Cond. index score0.71.01.5-1.2-0.6-1.01.1
Pavlov. Cond. latency score1.21.62.2-1.5-0.8-1.21.4
Pavlov. Cond. lever contacts0.40.50.8-0.9-0.6-0.70.6
Pavlov. Cond. magazine entry number0.91.11.71.20.60.9-1.3
Pavlov. Cond. intertrial magazine entries1.42.02.81.51.51.7-1.0
Pavlov. Cond. lever-magazine prob. diff.0.71.01.4-1.2-0.6-1.01.0
Pavlov. Cond. response bias0.30.50.7-0.9-0.3-0.70.8
Time in closed arm before self-admin1.92.55.5-1.5-1.1-2.40.9
Time in closed arm after self-admin0.10.10.20.20.5-0.2-0.3
Time in open arm before self-admin0.10.10.3-0.1-0.60.2-0.0
Time in open arm after self-admin0.40.50.9-0.7-1.0-0.60.4
Bone: periosteal estimation1.32.84.71.72.21.3-1.4
Bone: periosteal perimeter3.45.87.02.42.62.3-2.3
Bone: post-yield work0.40.51.40.21.20.50.6
Progressive ratio test 1 active lever presses0.30.31.20.41.10.10.2
Progressive ratio test 1 breakpoint0.20.20.80.30.9-0.00.3
Progressive ratio test 1 inactive lever presses0.40.61.70.51.30.5-0.4
Progressive ratio test 2 active lever presses0.20.30.6-0.00.7-0.10.8
Progressive ratio test 2 breakpoint0.20.30.7-0.10.6-0.20.8
Progressive ratio test 2 inactive lever presses0.40.71.2-0.9-0.3-1.10.8
Incentive Sensitization - Responses0.30.50.9-0.7-0.5-0.50.9
Incentive Sensitization - Breakpoint0.20.30.7-0.5-0.3-0.30.8
Sum of active levers in priming session hrs 5-60.20.10.30.40.30.2-0.5
Progressive ratio0.00.00.10.10.2-0.2-0.3
Food seeking constrained by brief footshock0.70.91.60.81.21.1-0.5
Seeking ratio, punishment vs. effort0.30.40.70.40.80.8-0.0
Retroperitoneal fat weight4.719.922.74.84.04.7-4.3
Reaction time number correct1.12.13.3-1.5-1.8-1.41.1
Reaction time mean minus median0.10.30.80.60.20.0-0.9
Reaction time mean minus median AUC0.61.42.91.30.70.8-1.7
Reaction time num false alarms0.10.10.2-0.2-0.4-0.4-0.3
Reaction time num false alarms AUC0.20.40.6-0.6-0.8-0.70.1
Reaction time trials correct on left1.12.13.3-1.5-1.8-1.41.1
Reaction time trials on left1.32.43.6-1.5-1.9-1.51.2
Reaction time mean0.10.10.30.0-0.2-0.3-0.6
Reaction time mean AUC0.00.10.2-0.0-0.2-0.3-0.4
Median of all reaction times0.10.10.1-0.2-0.4-0.4-0.3
Reaction time omissions0.40.60.9-0.8-0.9-1.00.5
Reaction time false alarm rate0.10.20.50.30.20.1-0.7
Reaction time premature initiation rate0.10.20.40.00.70.10.4
Reaction time premature initiations0.10.20.5-0.5-0.0-0.30.7
Std. dev. reaction times0.20.51.20.70.30.3-1.1
Reaction time trials completed1.32.43.6-1.5-1.9-1.51.2
Reaction time trials AUC0.91.62.5-1.3-1.6-1.21.0
Run reversals in cocaine runway, females0.60.60.8-0.8-0.9-0.80.6
Run reversals in cocaine runway, males0.10.10.20.40.40.10.2
Latency to leave start box in cocaine runway0.60.61.20.80.40.8-1.1
Latency to leave start box in cocaine runway, F0.00.00.0-0.0-0.20.0-0.1
Latency to leave start box in cocaine runway, M1.51.42.31.10.71.3-1.5
Std. dev. time between licks in bursts0.91.21.9-1.2-0.6-1.11.4
Total sessions with >9 infusions4.25.18.32.22.92.4-1.2
Short access day 1 total inactive lever presses1.01.44.50.62.10.80.1
Short access day 10 total inactive lever presses0.20.60.70.60.80.8-0.8
Short access day 1 total infusions1.11.42.91.11.71.1-0.6
Short access day 10 total infusions1.82.34.11.52.01.3-1.1
Short access total infusions2.53.16.71.72.61.6-0.7
Short access day 1 locomotion0.81.01.31.01.21.0-1.0
Short access day 10 total locomotion0.20.30.70.40.50.2-0.8
Short access total locomotion1.92.22.91.41.71.4-1.4
One hour access (0.3 mA shock)0.10.10.2-0.20.1-0.50.0
Compulsive drug intake1.41.74.5-1.1-0.9-0.52.1
One hour access (shock baseline)0.30.41.20.40.5-0.1-1.1
Social response proportion1.11.32.21.10.91.0-1.5
Social responses0.20.20.4-0.5-0.3-0.40.6
Social time1.82.43.1-1.8-1.3-1.71.5
Soleus weight0.31.02.7-1.0-0.4-0.51.6
Bone: stiffness2.03.25.81.72.41.6-1.2
Tibialis anterior weight0.41.51.9-1.3-1.0-1.41.2
Time to tail flick, vehicle, before self-admin0.00.00.10.10.3-0.00.0
Time to tail flick, vehicle, after self-admin1.01.42.2-1.2-1.0-1.50.9
Time to tail flick, test, before self-admin0.20.20.30.50.20.5-0.5
Time to tail flick, test, after self-admin0.40.40.6-0.6-0.7-0.80.3
Delta time to tail flick, vehicle, before/after SA0.00.00.00.00.2-0.1-0.1
Delta time to tail flick, test, before/after SA2.32.42.8-1.6-1.6-1.71.3
Tibia length0.51.42.51.21.61.4-0.2
Ambulatory time before self-admin0.20.40.6-0.6-0.5-0.80.4
Ambulatory time after self-admin1.51.73.1-1.4-0.6-1.21.8
Bone: tissue strength0.10.10.30.40.30.5-0.2
Total heroin consumption0.20.30.70.40.80.40.3
Bone: trabecular number0.00.00.1-0.1-0.30.0-0.1
Bone: trabecular spacing1.21.63.51.11.91.2-0.4
Bone: trabecular thickness0.10.20.3-0.0-0.5-0.3-0.6
Bone: trabecular tissue density0.71.11.5-1.1-1.0-1.20.6
Water consumed over 24 hours0.20.30.60.20.80.60.2
Number of responses in last shaping day0.20.20.5-0.20.7-0.50.1