LOC134479757

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC134479757 0.04 0.02 4.1e-04 0.03 0.02 0.02 0.02 1.5e-04 1.6e-03 3.5e-03 1.2e-03
2 IC gene expression LOC134479757 0.06 0.04 7.4e-03 0.02 0.02 0.01 0.01 4.1e-02 3.2e-02 9.2e-02 8.9e-02
3 NAcc gene expression LOC134479757 0.26 0.11 0.0e+00 0.15 0.1 0.17 0.16 5.7e-22 1.0e-14 6.3e-25 2.1e-23
4 Adipose gene expression LOC134479757 0.2 0.08 0.0e+00 0.14 0.15 0.14 0.15 3.5e-15 3.4e-16 2.2e-15 4.5e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.10.4-0.00.20.3
Area under the delay curve0.71.02.10.9-0.21.01.4
BMI with tail1.45.05.7-2.31.9-2.4-2.3
BMI without tail0.00.20.4-0.40.3-0.5-0.6
Body weight1.67.28.5-2.82.6-2.9-2.4
Weight adjusted by age0.00.10.20.0-0.50.10.3
Bone surface0.40.81.71.0-0.30.71.3
Bone volume0.00.10.10.30.10.20.4
Breakpoint value in progressive ratio session0.10.20.3-0.40.6-0.3-0.3
Number of licking bursts0.61.72.71.4-1.11.01.6
Context. condit. distance diff. score5.46.68.5-2.91.7-2.6-2.9
Locomotion velocity, session 10.80.92.10.9-0.20.71.5
Locomotion distance, session 14.96.29.12.7-1.72.53.0
Locomotion velocity, session 20.20.20.4-0.40.6-0.5-0.3
Locomotion distance, session 23.34.68.02.3-1.02.02.8
Locomotion velocity, session 30.10.10.3-0.0-0.6-0.1-0.1
Locomotion distance, session 32.83.24.21.7-2.01.61.7
Stereotopy head waving bouts, day 31.11.32.1-1.11.5-1.1-0.7
Stereotopy head waving duration, day 34.35.46.1-2.42.5-2.3-2.1
Locomotion velocity, session 70.10.10.2-0.30.1-0.4-0.2
Locomotion distance, session 70.10.10.40.30.10.30.6
Stereotopy head waving bouts, day 71.41.72.1-1.40.7-1.4-1.5
Stereotopy head waving duration, day 72.42.95.1-1.80.9-1.6-2.3
Locomotion velocity, session 81.21.52.1-1.21.4-1.4-0.6
Locomotion distance, session 80.50.71.1-0.90.4-0.8-1.0
Degree of sensitization distance4.65.06.1-2.22.5-2.0-2.2
Degree of sensitization stereotypy1.01.11.6-1.20.5-1.2-1.3
Conditioned locomotion0.40.40.6-0.70.5-0.5-0.8
Cocaine response after cond. corrected0.10.20.3-0.50.6-0.3-0.3
Cocaine response after cond. not corrected0.10.20.3-0.40.4-0.2-0.5
Cocaine response before conditioning0.20.20.50.4-0.70.5-0.1
Saline control response0.10.20.4-0.0-0.60.5-0.4
Bone: connectivity density0.00.00.10.10.2-0.10.2
Bone: cortical apparent density1.22.03.21.4-1.81.01.2
Bone: cortical area1.62.54.0-1.52.0-1.6-1.1
Bone: cortical porosity1.21.32.2-1.11.0-0.8-1.5
Bone: cortical porosity2.62.93.4-1.71.8-1.5-1.9
Bone: cortical thickness0.40.61.1-0.61.0-1.0-0.2
Bone: cortical thickness0.40.41.1-0.21.0-0.70.4
Bone: cortical tissue density1.21.93.11.4-1.81.01.2
Condit. Reinf. active minus inactive responses0.30.40.80.7-0.40.30.9
Condit. Reinf. active-inactive response ratio0.10.10.2-0.2-0.0-0.4-0.2
Condit. Reinf. active responses1.41.72.21.5-1.31.31.2
Condit. Reinf. inactive responses2.33.04.21.8-1.72.01.2
Incentive salience index mean0.60.71.21.0-0.60.61.1
Condit. Reinf. lever presses0.71.01.21.1-0.81.01.0
Condit. Reinf. active minus inactive responses0.40.61.80.70.30.11.4
Condit. Reinf. active-inactive response ratio0.20.40.70.00.8-0.60.7
Condit. Reinf. active responses0.20.30.60.10.6-0.40.8
Condit. Reinf. inactive responses0.10.10.3-0.20.5-0.30.2
Condit. Reinf. lever presses0.30.40.60.7-0.30.50.8
Condit. Reinf. lever reinforcers received0.20.20.50.20.5-0.20.7
Conditioned reinforcement - actives0.10.30.5-0.40.6-0.70.2
Conditioned reinforcement - inactives0.10.40.80.50.50.40.9
Conditioned locomotion1.62.43.7-1.51.9-1.7-0.9
Patch foraging indifference point 0 sec0.10.10.20.4-0.20.50.4
Patch foraging indifference point AUC0.92.24.71.4-0.81.32.2
Delay disc. indifference point, 0s delay1.51.72.2-1.21.5-0.9-1.5
Delay disc. indifference point, 16s delay1.52.23.41.6-0.81.51.9
Delay disc. indifference point, 2s delay0.20.20.50.20.30.30.7
Delay disc. indifference point, 24s delay0.91.54.30.9-0.20.82.1
Delay disc. indifference point, 4s delay0.40.41.00.60.10.51.0
Delay disc. indifference point, 8s delay0.91.52.51.2-0.71.31.6
Indifference point function ln k0.82.43.9-1.70.7-1.6-2.0
Indifference point function log k0.82.43.9-1.70.7-1.6-2.0
Patch foraging total patch changes 0 sec0.10.30.40.6-0.40.70.5
Patch foraging total patch changes 12 sec0.10.10.30.20.10.30.6
Patch foraging total patch changes 18 sec0.20.40.80.40.40.60.9
Patch foraging total patch changes 24 sec0.20.81.20.8-0.41.11.0
Patch foraging total patch changes 6 sec0.50.92.20.80.20.81.5
Patch foraging time to switch 0 sec0.10.51.5-0.50.6-0.1-1.2
Patch foraging water rate 0 sec0.00.10.40.3-0.10.20.7
Patch foraging water rate 12 sec0.20.71.01.0-1.00.70.5
Patch foraging water rate 18 sec0.51.21.61.2-0.81.11.3
Patch foraging water rate 24 sec0.20.20.3-0.50.3-0.5-0.5
Patch foraging water rate 6 sec1.52.23.61.5-1.91.21.2
Seeking ratio, delayed vs. immediate footshock1.31.82.11.5-1.31.31.3
Distance traveled before self-admin0.00.00.10.00.10.4-0.0
Distance traveled after self-admin0.20.30.60.30.60.20.8
Extensor digitorum longus weight0.10.20.40.4-0.70.6-0.2
Bone: elastic displacement0.00.00.1-0.00.0-0.30.0
Bone: elastic work3.14.15.5-2.02.3-1.9-1.8
Bone: endosteal estimation0.51.22.2-1.11.5-0.5-1.0
Bone: endosteal perimeter1.12.73.3-1.71.8-1.4-1.7
Epididymis fat weight2.110.512.1-3.52.9-3.1-3.4
Delta time in closed arm before/after self-admin0.10.10.2-0.20.5-0.40.2
Delta time in open arm before/after self-admin0.30.40.80.6-0.50.90.4
Diff in mean of infusions in LGA sessions0.20.30.5-0.40.7-0.60.4
Delay discount exponential model param0.91.22.5-1.00.3-1.1-1.6
Extinction: sum of active levers before priming0.81.32.6-1.11.6-1.0-0.6
Active lever presses in extinction session 60.50.50.6-0.80.8-0.6-0.7
Bone: final force1.93.15.7-1.62.4-1.7-1.0
Bone: final moment2.03.26.2-1.72.5-1.8-0.9
Food consumed during 24 hour testing period1.32.64.0-1.52.0-1.8-1.0
Glucose0.20.20.6-0.50.3-0.3-0.8
Heart weight6.19.911.5-3.23.4-3.1-2.8
Delay discount hyperbolic model param0.81.12.2-0.90.3-1.0-1.5
Intermittent access intake day 1-15 change0.00.20.50.5-0.70.3-0.0
Intermittent access intake escalation0.10.51.00.8-1.00.60.3
Intermittent access intake escalation 20.20.30.60.6-0.80.5-0.1
Intermitt. access day 1 inactive lever presses0.11.21.7-0.91.3-1.1-0.9
Intermitt. access day 15 inactive lever presses0.00.00.10.10.3-0.10.3
Intermitt. access escalation Index0.10.40.60.5-0.70.70.6
Intermittent access day 1 total infusions0.20.61.8-0.61.3-0.4-0.0
Intermittent access day 15 total infusions0.10.40.50.7-0.30.70.7
Intermittent access terminal intake (last 3 days)0.00.10.10.2-0.10.40.1
Intermittent access total infusions0.20.30.9-0.31.0-0.00.0
Intermittent access day 1 locomotion0.20.41.2-0.61.1-0.3-0.3
Intermittent access day 15 total locomotion0.20.61.4-0.71.2-0.5-0.5
Intermittent access total locomotion0.70.92.2-0.81.5-0.6-0.5
Intermittent access standard deviation0.42.23.3-1.41.6-1.1-1.8
Left kidney weight5.241.748.7-6.86.5-7.0-5.4
Right kidney weight7.753.661.3-7.77.4-7.8-6.3
Cocaine induced anxiety1.23.13.9-2.01.9-1.7-1.4
Post-drug Anxiety0.10.10.2-0.40.2-0.4-0.2
Baseline Anxiety3.15.26.12.5-2.42.22.1
Tail length0.31.82.11.4-1.41.50.9
Length with tail0.10.60.8-0.80.7-0.9-0.6
Length without tail1.57.98.9-2.93.0-3.0-2.3
Times rat made contact with spout0.20.30.5-0.10.6-0.70.4
Lifetime Intake0.70.92.6-0.81.6-0.6-0.1
Liver weight, left0.30.50.8-0.80.1-0.6-0.9
Liver weight, right2.03.46.4-2.00.4-1.7-2.5
Locomotor activity1.82.83.1-1.71.6-1.8-1.7
Locomotor testing distance0.00.10.20.4-0.30.20.2
Locomotor testing rearing0.51.72.0-1.41.2-1.3-1.4
Locomotion in novel chamber1.52.14.31.5-2.11.10.7
Locomotion in novel chamber post-restriction0.30.91.30.9-1.21.10.5
Fecal boli incidents, locomotor time 10.10.30.70.30.30.60.8
Change in fecal boli incidents, locomotor task0.20.20.5-0.0-0.2-0.70.6
Time >=10cm from walls, locomotor time 10.70.81.3-1.11.0-0.7-0.7
Bouts of movement, locomotor time 10.50.70.9-0.81.0-0.9-0.7
Total resting periods, locomotor time 10.50.61.0-0.71.0-0.8-0.5
Rest time, locomotor task time 10.71.11.6-0.91.3-1.2-0.6
Distance moved, locomotor task time 10.10.30.8-0.5-0.1-0.2-0.9
Vertical activity count, locomotor time 10.00.00.1-0.2-0.10.2-0.3
Time >=10cm from walls, locomotor time 20.00.00.0-0.00.1-0.00.2
Bouts of movement, locomotor time 20.10.40.6-0.70.5-0.8-0.6
Total resting periods, locomotor time 20.10.30.4-0.60.6-0.6-0.3
Rest time, locomotor task time 20.10.20.70.4-0.10.20.8
Distance moved, locomotor task time 20.40.51.3-0.60.2-0.7-1.1
Vertical activity count, locomotor time 20.10.30.4-0.60.5-0.3-0.6
Light reinforcement 10.00.10.20.4-0.10.20.3
Light reinforcement 20.51.12.0-1.00.4-1.2-1.4
Bone: marrow area0.51.32.5-1.11.6-0.6-1.1
Bone: maximum diameter3.56.910.0-2.63.2-2.6-2.0
Bone: maximum force2.34.68.8-2.03.0-2.1-1.1
Bone: maximum moment2.75.09.6-2.13.1-2.2-1.2
Mean time between licks in bursts0.10.30.70.5-0.80.60.2
Mean num. licks in bursts0.82.12.4-1.51.4-1.5-1.3
Cd content in liver0.30.30.7-0.40.5-0.80.4
Co content in liver0.20.20.60.30.4-0.30.8
Cu content in liver5.36.38.12.8-2.22.62.4
Fe content in liver1.51.92.8-1.41.7-1.0-1.3
K content in liver1.41.41.91.4-1.21.01.1
Mg content in liver0.80.91.31.1-0.70.81.0
Mn content in liver0.20.20.50.4-0.70.30.4
Na content in liver1.31.42.11.3-1.11.50.9
Rb content in liver0.20.30.50.10.7-0.30.7
Se content in liver0.50.61.30.7-1.20.60.4
Sr content in liver2.21.93.01.3-1.71.41.0
Zn content in liver0.20.20.40.5-0.40.30.6
Bone: minimum diameter0.40.81.6-0.81.3-0.6-0.8
Time in familiar zone, hab. session 10.20.30.90.30.30.10.9
Time in novel zone, hab. session 11.31.53.6-1.20.5-0.9-1.9
Total zone transitions, hab. session 17.09.911.13.3-3.12.93.2
Total locomotion distance, hab. session 14.26.07.02.5-2.62.42.2
Locomotion velocity, hab. session 14.56.46.92.6-2.52.52.4
Time in familiar zone, hab. session 20.20.20.50.1-0.70.4-0.4
Time in novel zone, hab. session 20.20.20.5-0.10.7-0.30.3
Total zone transitions, hab. session 22.83.66.62.1-1.01.62.6
Total locomotion distance, hab. session 21.51.92.91.6-0.81.31.7
Locomotion velocity, hab. session 22.43.24.52.0-1.11.82.1
Novel to familiar place preference ratio1.82.43.0-1.71.2-1.7-1.6
Novelty place preference2.43.13.8-2.01.3-1.9-1.8
Time in novel zone, NPP test3.13.84.6-2.11.5-2.1-1.9
Total zone transitions, NPP test6.29.211.53.2-2.72.83.4
Total locomotion distance, NPP test2.84.05.22.1-1.71.82.3
Locomotion velocity, NPP test3.75.25.92.4-2.02.22.4
Intraocular pressure0.10.10.2-0.40.3-0.3-0.1
Delta distance traveled before/after self-admin0.30.30.6-0.10.8-0.50.6
Delta ambulatory time before/after self-admin0.20.40.8-0.20.9-0.50.7
Parametrial fat weight0.10.20.4-0.2-0.50.1-0.6
Pavlov. Cond. lever latency0.40.40.6-0.70.6-0.8-0.6
Pavlov. Cond. magazine entry latency0.50.61.10.8-0.40.71.0
Pavlov. Cond. change in total contacts1.41.53.01.3-0.51.01.7
Pavlov. Cond. index score0.20.30.60.5-0.20.50.8
Pavlov. Cond. latency score0.20.20.40.4-0.20.40.6
Pavlov. Cond. lever contacts1.11.41.91.2-1.01.41.1
Pavlov. Cond. magazine entry number0.70.91.6-1.00.6-0.8-1.3
Pavlov. Cond. intertrial magazine entries0.81.01.61.1-0.51.01.2
Pavlov. Cond. lever-magazine prob. diff.0.40.50.90.7-0.40.71.0
Pavlov. Cond. response bias0.70.91.41.0-0.61.01.2
Pavlov. Cond. lever latency0.20.30.5-0.70.4-0.5-0.4
Pavlov. Cond. magazine entry latency1.31.82.71.6-0.71.31.6
Pavlov. Cond. change in total contacts0.10.20.60.20.8-0.10.6
Pavlov. Cond. index score0.61.01.51.2-0.61.01.1
Pavlov. Cond. latency score1.01.62.21.5-0.81.21.4
Pavlov. Cond. lever contacts0.30.50.80.9-0.60.70.6
Pavlov. Cond. magazine entry number0.81.11.7-1.20.6-0.9-1.3
Pavlov. Cond. intertrial magazine entries0.92.02.8-1.51.5-1.7-1.0
Pavlov. Cond. lever-magazine prob. diff.0.61.01.41.2-0.61.01.0
Pavlov. Cond. response bias0.30.50.70.9-0.30.70.8
Time in closed arm before self-admin1.42.55.51.5-1.12.40.9
Time in closed arm after self-admin0.10.10.2-0.20.50.2-0.3
Time in open arm before self-admin0.10.10.30.1-0.6-0.2-0.0
Time in open arm after self-admin0.40.50.90.7-1.00.60.4
Bone: periosteal estimation1.22.84.7-1.72.2-1.3-1.4
Bone: periosteal perimeter3.05.87.0-2.42.6-2.3-2.3
Bone: post-yield work0.30.51.4-0.21.2-0.50.6
Progressive ratio test 1 active lever presses0.20.31.2-0.41.1-0.10.2
Progressive ratio test 1 breakpoint0.10.20.8-0.30.90.00.3
Progressive ratio test 1 inactive lever presses0.20.61.7-0.51.3-0.5-0.4
Progressive ratio test 2 active lever presses0.20.30.60.00.70.10.8
Progressive ratio test 2 breakpoint0.20.30.70.10.60.20.8
Progressive ratio test 2 inactive lever presses0.20.71.20.9-0.31.10.8
Incentive Sensitization - Responses0.20.50.90.7-0.50.50.9
Incentive Sensitization - Breakpoint0.10.30.70.5-0.30.30.8
Sum of active levers in priming session hrs 5-60.20.10.3-0.40.3-0.2-0.5
Progressive ratio0.00.00.1-0.10.20.2-0.3
Food seeking constrained by brief footshock0.70.91.6-0.81.2-1.1-0.5
Seeking ratio, punishment vs. effort0.20.40.7-0.40.8-0.8-0.0
Retroperitoneal fat weight4.419.922.7-4.84.0-4.7-4.3
Reaction time number correct0.62.13.31.5-1.81.41.1
Reaction time mean minus median0.00.30.8-0.60.2-0.0-0.9
Reaction time mean minus median AUC0.21.42.9-1.30.7-0.8-1.7
Reaction time num false alarms0.10.10.20.2-0.40.4-0.3
Reaction time num false alarms AUC0.20.40.60.6-0.80.70.1
Reaction time trials correct on left0.62.13.31.5-1.81.41.1
Reaction time trials on left0.72.43.61.5-1.91.51.2
Reaction time mean0.00.10.3-0.0-0.20.3-0.6
Reaction time mean AUC0.00.10.20.0-0.20.3-0.4
Median of all reaction times0.10.10.10.2-0.40.4-0.3
Reaction time omissions0.40.60.90.8-0.91.00.5
Reaction time false alarm rate0.10.20.5-0.30.2-0.1-0.7
Reaction time premature initiation rate0.10.20.4-0.00.7-0.10.4
Reaction time premature initiations0.10.20.50.5-0.00.30.7
Std. dev. reaction times0.10.51.2-0.70.3-0.3-1.1
Reaction time trials completed0.72.43.61.5-1.91.51.2
Reaction time trials AUC0.51.62.51.3-1.61.21.0
Run reversals in cocaine runway, females0.50.60.80.8-0.90.80.6
Run reversals in cocaine runway, males0.10.10.2-0.40.4-0.10.2
Latency to leave start box in cocaine runway0.50.61.2-0.80.4-0.8-1.1
Latency to leave start box in cocaine runway, F0.00.00.00.0-0.2-0.0-0.1
Latency to leave start box in cocaine runway, M1.51.42.3-1.10.7-1.3-1.5
Std. dev. time between licks in bursts0.61.21.91.2-0.61.11.4
Total sessions with >9 infusions4.15.18.3-2.22.9-2.4-1.2
Short access day 1 total inactive lever presses0.71.44.5-0.62.1-0.80.1
Short access day 10 total inactive lever presses0.10.60.7-0.60.8-0.8-0.8
Short access day 1 total infusions0.71.42.9-1.11.7-1.1-0.6
Short access day 10 total infusions1.42.34.1-1.52.0-1.3-1.1
Short access total infusions2.23.16.7-1.72.6-1.6-0.7
Short access day 1 locomotion0.61.01.3-1.01.2-1.0-1.0
Short access day 10 total locomotion0.10.30.7-0.40.5-0.2-0.8
Short access total locomotion1.52.22.9-1.41.7-1.4-1.4
One hour access (0.3 mA shock)0.10.10.20.20.10.50.0
Compulsive drug intake1.21.74.51.1-0.90.52.1
One hour access (shock baseline)0.20.41.2-0.40.50.1-1.1
Social response proportion1.01.32.2-1.10.9-1.0-1.5
Social responses0.20.20.40.5-0.30.40.6
Social time1.52.43.11.8-1.31.71.5
Soleus weight0.31.02.71.0-0.40.51.6
Bone: stiffness1.83.25.8-1.72.4-1.6-1.2
Tibialis anterior weight0.41.51.91.3-1.01.41.2
Time to tail flick, vehicle, before self-admin0.00.00.1-0.10.30.00.0
Time to tail flick, vehicle, after self-admin0.71.42.21.2-1.01.50.9
Time to tail flick, test, before self-admin0.20.20.3-0.50.2-0.5-0.5
Time to tail flick, test, after self-admin0.40.40.60.6-0.70.80.3
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.00.20.1-0.1
Delta time to tail flick, test, before/after SA1.92.42.81.6-1.61.71.3
Tibia length0.51.42.5-1.21.6-1.4-0.2
Ambulatory time before self-admin0.10.40.60.6-0.50.80.4
Ambulatory time after self-admin1.11.73.11.4-0.61.21.8
Bone: tissue strength0.10.10.3-0.40.3-0.5-0.2
Total heroin consumption0.20.30.7-0.40.8-0.40.3
Bone: trabecular number0.00.00.10.1-0.3-0.0-0.1
Bone: trabecular spacing1.11.63.5-1.11.9-1.2-0.4
Bone: trabecular thickness0.10.20.30.0-0.50.3-0.6
Bone: trabecular tissue density0.61.11.51.1-1.01.20.6
Water consumed over 24 hours0.10.30.6-0.20.8-0.60.2
Number of responses in last shaping day0.20.20.50.20.70.50.1