LOC134479404

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134479404 0.42 0.1 0.0e+00 0.38 0.38 0.37 0.38 9.4e-44 5.3e-44 2.4e-43 3.7e-44
2 pVTA gene expression LOC134479404 0.06 0.03 3.2e-03 0.02 0.03 0.04 0.03 4.5e-03 2.1e-03 5.8e-04 4.0e-03
3 Liver gene expression LOC134479404 0.04 0.03 6.4e-03 0.03 0 0.01 0.01 5.2e-04 9.2e-02 8.8e-03 7.5e-03
4 NAcc gene expression LOC134479404 0.02 0.02 6.0e-03 0.01 0.01 0 0 9.8e-03 2.5e-02 2.2e-01 1.0e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.91.53.11.31.2-1.8-0.3
Area under the delay curve0.10.20.20.20.4-0.5-0.5
BMI with tail0.72.48.50.3-0.1-0.9-2.9
BMI without tail1.64.86.92.11.9-2.6-2.0
Body weight3.113.716.03.53.9-3.3-4.0
Weight adjusted by age1.72.64.01.61.7-2.0-0.9
Bone surface0.91.74.30.91.3-2.10.1
Bone volume1.62.95.11.52.3-2.10.1
Breakpoint value in progressive ratio session3.13.85.52.31.9-1.7-1.8
Number of licking bursts4.26.88.8-3.0-2.92.32.2
Context. condit. distance diff. score1.21.44.80.60.7-0.2-2.2
Locomotion velocity, session 10.30.30.50.40.2-0.60.7
Locomotion distance, session 12.02.54.2-1.9-2.01.5-0.0
Locomotion velocity, session 20.10.20.3-0.3-0.40.60.0
Locomotion distance, session 21.62.22.9-1.5-1.71.70.9
Locomotion velocity, session 30.91.01.7-0.40.71.31.3
Locomotion distance, session 31.11.12.3-0.70.31.31.5
Stereotopy head waving bouts, day 32.32.75.01.52.2-1.7-0.6
Stereotopy head waving duration, day 31.01.12.71.01.7-0.9-0.3
Locomotion velocity, session 70.70.71.8-1.0-0.21.30.0
Locomotion distance, session 70.81.01.9-1.2-1.40.8-0.4
Stereotopy head waving bouts, day 72.93.36.91.82.6-1.4-1.0
Stereotopy head waving duration, day 73.64.48.82.33.0-1.5-1.1
Locomotion velocity, session 81.11.34.00.90.3-0.6-2.0
Locomotion distance, session 80.71.02.1-0.5-0.41.2-1.4
Degree of sensitization distance0.70.81.8-0.2-1.0-0.5-1.4
Degree of sensitization stereotypy2.02.24.71.52.2-1.0-0.9
Conditioned locomotion2.22.53.8-1.9-0.61.51.9
Cocaine response after cond. corrected1.92.35.8-1.6-0.82.40.3
Cocaine response after cond. not corrected1.51.74.2-1.4-0.62.1-0.5
Cocaine response before conditioning0.70.92.00.30.5-1.1-1.4
Saline control response0.20.30.6-0.5-0.4-0.5-0.8
Bone: connectivity density0.20.40.70.80.2-0.6-0.7
Bone: cortical apparent density1.72.34.7-1.6-1.40.12.2
Bone: cortical area0.50.81.60.21.30.61.1
Bone: cortical porosity1.11.22.41.50.6-0.8-1.2
Bone: cortical porosity0.80.81.61.30.6-0.7-1.0
Bone: cortical thickness1.32.15.6-1.4-0.82.40.6
Bone: cortical thickness5.76.711.7-2.8-2.43.41.2
Bone: cortical tissue density1.72.34.6-1.6-1.40.12.1
Condit. Reinf. active minus inactive responses1.51.63.31.80.8-0.8-1.4
Condit. Reinf. active-inactive response ratio0.90.92.41.60.9-0.6-0.3
Condit. Reinf. active responses0.81.02.01.4-0.0-0.4-1.4
Condit. Reinf. inactive responses0.91.22.4-0.1-1.6-0.1-1.5
Incentive salience index mean1.31.63.61.90.6-0.5-1.4
Condit. Reinf. lever presses0.71.02.61.60.4-0.5-1.0
Condit. Reinf. active minus inactive responses1.11.42.3-0.5-1.5-0.9-1.4
Condit. Reinf. active-inactive response ratio0.40.40.6-0.1-0.8-0.8-0.8
Condit. Reinf. active responses0.71.02.00.3-0.4-1.4-1.2
Condit. Reinf. inactive responses0.00.10.20.10.2-0.4-0.1
Condit. Reinf. lever presses1.82.55.01.71.2-2.2-0.8
Condit. Reinf. lever reinforcers received1.01.32.70.5-0.4-1.6-1.5
Conditioned reinforcement - actives0.20.30.60.3-0.30.7-0.8
Conditioned reinforcement - inactives0.60.91.8-0.8-1.11.30.1
Conditioned locomotion0.50.72.2-0.3-0.81.5-0.2
Patch foraging indifference point 0 sec1.32.47.11.00.3-2.7-1.3
Patch foraging indifference point AUC0.10.20.40.60.4-0.5-0.2
Delay disc. indifference point, 0s delay0.90.91.8-0.1-1.3-0.9-1.0
Delay disc. indifference point, 16s delay0.20.20.80.00.9-0.10.5
Delay disc. indifference point, 2s delay1.11.33.00.90.4-1.0-1.7
Delay disc. indifference point, 24s delay0.00.00.00.1-0.00.20.2
Delay disc. indifference point, 4s delay0.50.51.2-0.5-0.50.41.1
Delay disc. indifference point, 8s delay1.11.32.00.90.9-1.4-1.3
Indifference point function ln k0.20.30.60.40.1-0.7-0.8
Indifference point function log k0.20.30.60.40.1-0.7-0.8
Patch foraging total patch changes 0 sec1.42.67.31.00.2-2.7-1.4
Patch foraging total patch changes 12 sec1.62.13.51.61.3-1.9-0.9
Patch foraging total patch changes 18 sec1.21.95.70.80.7-2.4-0.8
Patch foraging total patch changes 24 sec1.52.54.51.41.5-2.1-1.2
Patch foraging total patch changes 6 sec0.40.72.40.30.2-1.5-0.3
Patch foraging time to switch 0 sec0.81.62.9-0.90.61.51.7
Patch foraging water rate 0 sec1.42.96.51.20.1-1.8-2.6
Patch foraging water rate 12 sec0.71.53.11.1-0.1-1.2-1.8
Patch foraging water rate 18 sec2.64.18.92.31.0-1.1-3.0
Patch foraging water rate 24 sec3.24.511.01.80.1-2.0-3.3
Patch foraging water rate 6 sec3.04.36.32.51.5-2.5-1.7
Seeking ratio, delayed vs. immediate footshock0.91.12.0-1.4-1.00.80.9
Distance traveled before self-admin0.30.40.9-1.0-0.60.2-0.4
Distance traveled after self-admin0.50.61.40.81.2-0.3-0.5
Extensor digitorum longus weight0.31.11.80.21.3-0.9-1.3
Bone: elastic displacement1.71.92.8-1.5-1.51.70.7
Bone: elastic work0.60.71.2-0.2-0.71.1-1.1
Bone: endosteal estimation2.24.78.82.03.0-2.31.0
Bone: endosteal perimeter1.83.88.11.92.8-1.60.9
Epididymis fat weight0.10.50.90.90.5-0.3-0.8
Delta time in closed arm before/after self-admin0.20.20.4-0.2-0.20.50.6
Delta time in open arm before/after self-admin1.31.32.70.70.5-1.3-1.6
Diff in mean of infusions in LGA sessions1.01.22.60.70.2-1.6-1.4
Delay discount exponential model param0.10.10.2-0.2-0.40.40.4
Extinction: sum of active levers before priming2.93.26.62.12.6-1.2-0.4
Active lever presses in extinction session 63.53.54.92.12.2-2.1-0.7
Bone: final force1.11.73.21.51.2-0.0-1.8
Bone: final moment1.21.93.31.61.2-0.5-1.8
Food consumed during 24 hour testing period0.20.30.80.30.4-0.3-0.9
Glucose1.11.82.9-1.3-1.21.01.7
Heart weight0.91.33.40.91.0-1.8-0.1
Delay discount hyperbolic model param0.10.20.3-0.3-0.40.40.5
Intermittent access intake day 1-15 change0.91.94.0-1.4-2.01.30.2
Intermittent access intake escalation0.91.94.0-1.4-2.01.20.2
Intermittent access intake escalation 20.91.01.8-0.9-0.91.40.8
Intermitt. access day 1 inactive lever presses0.00.10.1-0.40.0-0.3-0.2
Intermitt. access day 15 inactive lever presses0.20.31.00.4-0.00.4-1.0
Intermitt. access escalation Index0.20.20.40.60.5-0.2-0.4
Intermittent access day 1 total infusions0.20.40.60.30.70.60.8
Intermittent access day 15 total infusions0.81.22.0-0.8-1.11.40.7
Intermittent access terminal intake (last 3 days)0.20.30.60.10.10.80.8
Intermittent access total infusions0.30.30.5-0.4-0.50.70.7
Intermittent access day 1 locomotion0.10.10.20.40.50.10.2
Intermittent access day 15 total locomotion0.10.20.4-0.3-0.70.60.0
Intermittent access total locomotion0.10.10.40.20.10.6-0.3
Intermittent access standard deviation0.20.40.7-0.5-0.60.40.8
Left kidney weight0.20.82.50.81.6-0.0-0.3
Right kidney weight0.31.33.4-0.21.90.61.1
Cocaine induced anxiety0.91.24.2-0.4-0.62.0-0.4
Post-drug Anxiety1.21.33.6-0.9-0.91.90.3
Baseline Anxiety0.40.41.1-0.6-0.3-0.41.0
Tail length2.07.915.63.03.9-2.4-1.1
Length with tail3.716.129.24.55.4-2.9-2.5
Length without tail1.75.39.52.63.1-1.6-1.6
Times rat made contact with spout0.91.01.60.91.3-1.2-0.3
Lifetime Intake0.20.20.5-0.1-0.30.50.7
Liver weight, left1.01.73.01.41.1-1.7-0.8
Liver weight, right0.30.51.3-0.5-0.40.61.2
Locomotor activity3.45.38.32.91.9-1.4-2.7
Locomotor testing distance1.22.13.61.91.0-0.7-1.8
Locomotor testing rearing1.02.13.01.71.5-1.4-1.1
Locomotion in novel chamber0.70.82.6-0.5-0.30.71.6
Locomotion in novel chamber post-restriction0.91.53.11.81.6-0.3-0.4
Fecal boli incidents, locomotor time 10.40.60.9-0.9-0.20.9-0.8
Change in fecal boli incidents, locomotor task1.51.43.4-0.9-0.41.11.8
Time >=10cm from walls, locomotor time 11.11.22.40.71.30.1-1.5
Bouts of movement, locomotor time 11.21.42.00.81.4-1.41.0
Total resting periods, locomotor time 11.11.21.70.61.3-1.21.2
Rest time, locomotor task time 10.40.51.2-0.90.10.11.1
Distance moved, locomotor task time 10.50.71.41.20.1-0.2-1.2
Vertical activity count, locomotor time 10.20.61.10.1-0.70.8-1.0
Time >=10cm from walls, locomotor time 21.11.63.90.4-0.31.5-2.0
Bouts of movement, locomotor time 20.60.91.80.1-0.5-1.21.4
Total resting periods, locomotor time 20.61.12.7-0.2-0.6-1.21.7
Rest time, locomotor task time 21.92.43.0-1.7-1.71.21.5
Distance moved, locomotor task time 21.41.72.51.51.1-0.8-1.6
Vertical activity count, locomotor time 20.20.30.80.2-0.10.5-0.9
Light reinforcement 13.38.012.23.52.4-1.8-3.3
Light reinforcement 20.40.71.61.00.10.1-1.3
Bone: marrow area2.35.09.32.03.0-2.41.0
Bone: maximum diameter1.12.04.20.72.1-0.71.7
Bone: maximum force0.91.64.31.32.10.5-0.6
Bone: maximum moment0.91.64.21.32.10.1-0.5
Mean time between licks in bursts1.63.84.9-1.9-1.52.22.2
Mean num. licks in bursts5.18.010.73.13.3-2.7-2.1
Cd content in liver0.20.20.70.30.30.3-0.8
Co content in liver2.93.35.42.22.3-1.70.0
Cu content in liver0.30.40.9-0.1-0.70.1-1.0
Fe content in liver0.81.02.5-0.6-0.1-1.01.6
K content in liver0.30.30.80.90.4-0.40.2
Mg content in liver0.50.51.10.4-0.1-0.81.1
Mn content in liver1.21.31.61.31.0-1.11.2
Na content in liver0.70.72.10.40.8-1.5-0.2
Rb content in liver0.20.30.4-0.4-0.5-0.50.6
Se content in liver0.20.20.3-0.1-0.6-0.4-0.5
Sr content in liver0.20.20.4-0.20.00.5-0.6
Zn content in liver0.50.51.9-0.1-1.4-0.20.5
Bone: minimum diameter2.24.18.11.62.8-1.51.9
Time in familiar zone, hab. session 10.80.82.8-0.4-0.5-0.21.7
Time in novel zone, hab. session 11.01.02.40.81.00.1-1.5
Total zone transitions, hab. session 10.71.02.0-1.4-0.71.2-0.0
Total locomotion distance, hab. session 12.43.46.3-2.5-1.62.20.4
Locomotion velocity, hab. session 12.33.25.8-2.4-1.72.00.3
Time in familiar zone, hab. session 21.01.02.90.80.8-1.7-0.3
Time in novel zone, hab. session 20.90.92.2-0.7-0.81.5-0.6
Total zone transitions, hab. session 20.40.51.6-0.5-0.4-0.0-1.3
Total locomotion distance, hab. session 21.01.42.1-1.4-1.30.9-1.0
Locomotion velocity, hab. session 20.81.11.7-1.3-1.11.0-0.8
Novel to familiar place preference ratio1.11.23.0-0.80.51.70.9
Novelty place preference0.91.01.9-0.51.01.40.9
Time in novel zone, NPP test0.80.81.8-0.60.81.30.7
Total zone transitions, NPP test0.60.83.1-0.1-0.2-0.4-1.7
Total locomotion distance, NPP test0.60.82.8-0.30.20.4-1.7
Locomotion velocity, NPP test0.40.61.7-0.20.40.7-1.3
Intraocular pressure1.62.43.0-1.4-1.51.7-1.5
Delta distance traveled before/after self-admin2.32.44.52.11.6-1.4-0.9
Delta ambulatory time before/after self-admin1.62.03.71.91.5-1.2-0.8
Parametrial fat weight0.10.20.70.30.80.00.4
Pavlov. Cond. lever latency1.11.42.9-1.5-0.31.70.7
Pavlov. Cond. magazine entry latency1.92.43.61.71.5-1.9-1.0
Pavlov. Cond. change in total contacts4.75.07.62.61.7-2.8-1.6
Pavlov. Cond. index score2.22.74.32.11.3-2.0-1.0
Pavlov. Cond. latency score1.82.33.92.01.2-1.8-0.8
Pavlov. Cond. lever contacts1.62.03.51.70.7-1.9-0.9
Pavlov. Cond. magazine entry number2.63.35.6-1.9-1.22.41.6
Pavlov. Cond. intertrial magazine entries0.50.61.1-0.5-1.00.3-0.9
Pavlov. Cond. lever-magazine prob. diff.1.92.33.81.81.1-1.9-1.0
Pavlov. Cond. response bias3.74.66.22.41.4-2.5-2.1
Pavlov. Cond. lever latency1.82.54.9-1.8-1.02.21.0
Pavlov. Cond. magazine entry latency0.40.50.70.80.1-0.9-0.8
Pavlov. Cond. change in total contacts2.33.77.92.11.1-2.8-1.1
Pavlov. Cond. index score1.31.73.61.40.4-1.9-1.0
Pavlov. Cond. latency score1.11.52.91.40.5-1.7-0.9
Pavlov. Cond. lever contacts1.92.64.81.91.1-2.2-0.9
Pavlov. Cond. magazine entry number0.81.01.4-1.20.31.01.1
Pavlov. Cond. intertrial magazine entries0.00.00.1-0.1-0.30.2-0.1
Pavlov. Cond. lever-magazine prob. diff.1.21.63.61.40.3-1.9-0.9
Pavlov. Cond. response bias1.72.34.31.80.8-2.1-1.0
Time in closed arm before self-admin0.30.40.60.60.2-0.8-0.7
Time in closed arm after self-admin0.10.10.20.2-0.2-0.20.5
Time in open arm before self-admin0.91.02.2-0.60.01.51.2
Time in open arm after self-admin0.70.81.20.71.1-1.1-0.5
Bone: periosteal estimation1.42.96.71.32.6-1.31.2
Bone: periosteal perimeter2.54.49.42.23.1-1.70.5
Bone: post-yield work0.81.22.1-0.81.50.61.3
Progressive ratio test 1 active lever presses0.10.10.1-0.30.10.10.4
Progressive ratio test 1 breakpoint0.10.10.2-0.30.10.00.4
Progressive ratio test 1 inactive lever presses0.10.20.50.30.4-0.7-0.2
Progressive ratio test 2 active lever presses0.20.20.5-0.1-0.30.5-0.7
Progressive ratio test 2 breakpoint0.20.20.7-0.1-0.30.4-0.8
Progressive ratio test 2 inactive lever presses0.20.30.9-0.4-0.30.90.1
Incentive Sensitization - Responses0.50.72.3-0.0-0.40.6-1.5
Incentive Sensitization - Breakpoint0.60.82.90.1-0.40.5-1.7
Sum of active levers in priming session hrs 5-64.13.85.62.42.4-1.6-1.1
Progressive ratio0.30.50.90.70.9-0.6-0.2
Food seeking constrained by brief footshock0.20.20.7-0.3-0.30.2-0.8
Seeking ratio, punishment vs. effort0.10.20.2-0.4-0.50.4-0.2
Retroperitoneal fat weight0.41.76.00.7-0.5-0.3-2.4
Reaction time number correct0.81.63.3-0.6-1.11.2-1.8
Reaction time mean minus median0.41.01.6-1.3-1.20.01.1
Reaction time mean minus median AUC0.30.71.4-1.1-1.20.00.7
Reaction time num false alarms0.30.41.00.2-0.70.4-1.0
Reaction time num false alarms AUC0.40.72.00.2-0.60.3-1.4
Reaction time trials correct on left0.81.63.3-0.6-1.11.2-1.8
Reaction time trials on left0.91.62.9-0.7-1.31.2-1.7
Reaction time mean1.11.73.5-1.2-0.9-1.11.9
Reaction time mean AUC1.11.83.2-1.4-1.0-1.01.8
Median of all reaction times1.11.63.1-1.0-0.7-1.41.7
Reaction time omissions2.53.66.5-2.5-2.4-0.41.4
Reaction time false alarm rate0.10.20.30.6-0.0-0.4-0.5
Reaction time premature initiation rate1.62.24.61.52.2-0.8-1.1
Reaction time premature initiations0.91.74.01.01.3-0.1-2.0
Std. dev. reaction times1.12.13.1-1.7-1.8-0.11.5
Reaction time trials completed0.91.62.9-0.7-1.31.2-1.7
Reaction time trials AUC1.01.93.2-0.8-1.51.2-1.8
Run reversals in cocaine runway, females0.60.61.01.00.6-0.90.4
Run reversals in cocaine runway, males0.20.20.60.2-0.8-0.40.3
Latency to leave start box in cocaine runway1.01.11.6-1.2-1.1-1.30.3
Latency to leave start box in cocaine runway, F0.40.40.6-0.7-0.6-0.80.4
Latency to leave start box in cocaine runway, M0.60.61.3-1.1-0.8-0.50.4
Std. dev. time between licks in bursts1.01.43.9-1.0-0.30.92.0
Total sessions with >9 infusions0.60.71.11.10.9-0.90.3
Short access day 1 total inactive lever presses0.40.50.80.90.8-0.7-0.2
Short access day 10 total inactive lever presses0.20.51.1-0.1-0.20.9-1.0
Short access day 1 total infusions1.11.43.11.71.4-0.80.1
Short access day 10 total infusions0.40.51.7-0.40.10.21.3
Short access total infusions0.30.40.70.70.6-0.10.9
Short access day 1 locomotion0.81.01.61.31.3-0.8-0.2
Short access day 10 total locomotion0.91.73.81.52.0-0.50.6
Short access total locomotion1.51.83.11.81.7-1.00.3
One hour access (0.3 mA shock)0.91.02.31.50.6-0.3-1.2
Compulsive drug intake1.51.82.61.61.6-1.3-0.8
One hour access (shock baseline)0.10.20.50.1-0.40.70.1
Social response proportion0.10.10.5-0.10.0-0.10.7
Social responses0.40.51.10.2-0.5-1.0-0.8
Social time4.15.58.9-2.7-1.81.83.0
Soleus weight2.26.411.42.83.4-1.8-1.8
Bone: stiffness0.60.92.50.61.60.60.6
Tibialis anterior weight4.816.322.14.13.6-3.6-4.7
Time to tail flick, vehicle, before self-admin2.22.33.2-1.4-1.61.31.8
Time to tail flick, vehicle, after self-admin1.01.32.9-0.5-1.7-0.0-1.5
Time to tail flick, test, before self-admin2.42.53.9-1.9-1.52.00.2
Time to tail flick, test, after self-admin3.84.05.2-2.1-2.32.21.1
Delta time to tail flick, vehicle, before/after SA1.61.54.9-0.1-0.9-0.6-2.2
Delta time to tail flick, test, before/after SA0.30.30.4-0.3-0.70.50.7
Tibia length0.20.41.0-0.10.81.0-0.4
Ambulatory time before self-admin0.30.41.1-1.0-0.70.1-0.2
Ambulatory time after self-admin1.31.52.01.21.4-0.8-1.3
Bone: tissue strength0.91.02.0-0.9-1.4-0.1-1.0
Total heroin consumption2.93.45.52.02.3-1.6-1.3
Bone: trabecular number0.20.40.80.40.1-0.90.8
Bone: trabecular spacing0.60.82.80.40.51.7-0.2
Bone: trabecular thickness0.70.92.00.51.2-1.4-0.0
Bone: trabecular tissue density0.91.32.50.01.0-1.31.6
Water consumed over 24 hours0.91.33.20.6-0.1-1.2-1.8
Number of responses in last shaping day0.91.01.51.11.2-1.1-0.4