LOC134479335

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134479335 0.04 0.03 1.5e-04 0.02 0.02 0.01 0.02 2.6e-03 1.2e-03 2.9e-02 3.2e-03
2 Brain gene expression LOC134479335 0.35 0.1 6.0e-14 0.16 0.16 0.16 0.16 7.0e-15 9.3e-15 2.1e-14 9.2e-15
3 RMTg gene expression LOC134479335 0.38 0.17 1.0e-03 0.2 0.09 0.14 0.16 5.8e-06 2.9e-03 1.2e-04 6.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density3.86.58.42.1-2.6-2.9
Area under the delay curve0.50.61.00.5-0.8-1.0
BMI with tail1.34.410.1-3.20.81.6
BMI without tail0.82.46.6-2.60.20.8
Body weight0.83.47.4-2.70.91.4
Weight adjusted by age0.20.30.60.30.50.7
Bone surface1.12.03.30.4-1.8-1.6
Bone volume2.34.15.51.3-2.3-2.3
Breakpoint value in progressive ratio session2.83.34.81.0-2.0-2.2
Number of licking bursts0.91.53.2-1.81.00.5
Context. condit. distance diff. score0.40.40.80.4-0.9-0.5
Locomotion velocity, session 10.40.41.3-1.1-0.1-0.0
Locomotion distance, session 10.20.20.30.5-0.5-0.3
Locomotion velocity, session 20.20.30.6-0.80.3-0.2
Locomotion distance, session 20.20.30.5-0.1-0.6-0.7
Locomotion velocity, session 30.10.10.30.50.10.3
Locomotion distance, session 30.20.30.60.8-0.4-0.2
Stereotopy head waving bouts, day 31.72.02.31.5-1.3-1.4
Stereotopy head waving duration, day 30.00.10.10.40.10.1
Locomotion velocity, session 70.30.30.60.0-0.8-0.6
Locomotion distance, session 70.20.30.8-0.90.10.1
Stereotopy head waving bouts, day 70.00.00.0-0.2-0.00.0
Stereotopy head waving duration, day 70.20.20.30.30.50.6
Locomotion velocity, session 80.70.91.30.4-1.1-1.1
Locomotion distance, session 81.01.51.71.3-1.3-1.0
Degree of sensitization distance1.41.54.0-2.00.50.4
Degree of sensitization stereotypy0.50.50.8-0.90.50.7
Conditioned locomotion0.91.12.61.6-0.6-0.6
Cocaine response after cond. corrected0.60.81.1-1.0-0.7-0.9
Cocaine response after cond. not corrected0.20.20.3-0.3-0.6-0.6
Cocaine response before conditioning1.21.43.31.80.60.8
Saline control response0.81.12.61.6-0.6-0.6
Bone: connectivity density2.53.85.80.7-2.3-2.4
Bone: cortical apparent density2.53.55.3-0.4-2.2-2.3
Bone: cortical area0.30.50.5-0.70.70.7
Bone: cortical porosity0.20.30.60.80.10.4
Bone: cortical porosity0.40.40.80.9-0.5-0.3
Bone: cortical thickness0.40.61.5-1.20.50.4
Bone: cortical thickness0.40.50.70.3-0.8-0.8
Bone: cortical tissue density2.63.55.2-0.5-2.3-2.3
Condit. Reinf. active minus inactive responses2.22.56.1-2.50.70.9
Condit. Reinf. active-inactive response ratio1.01.02.7-1.60.30.5
Condit. Reinf. active responses0.70.82.1-1.50.40.4
Condit. Reinf. inactive responses0.30.40.70.4-0.5-0.8
Incentive salience index mean0.70.81.3-1.20.70.8
Condit. Reinf. lever presses0.40.61.51.20.40.4
Condit. Reinf. active minus inactive responses0.40.51.0-1.0-0.6-0.4
Condit. Reinf. active-inactive response ratio0.50.60.8-0.60.80.9
Condit. Reinf. active responses0.20.30.7-0.8-0.4-0.3
Condit. Reinf. inactive responses0.10.10.30.0-0.4-0.5
Condit. Reinf. lever presses0.10.10.2-0.0-0.4-0.4
Condit. Reinf. lever reinforcers received0.40.61.1-1.1-0.6-0.5
Conditioned reinforcement - actives1.52.53.61.4-1.9-1.5
Conditioned reinforcement - inactives0.71.02.01.4-1.0-0.3
Conditioned locomotion2.22.94.41.4-2.1-1.5
Patch foraging indifference point 0 sec0.10.30.60.80.10.4
Patch foraging indifference point AUC1.62.33.7-0.21.81.9
Delay disc. indifference point, 0s delay0.20.30.7-0.80.1-0.2
Delay disc. indifference point, 16s delay0.40.50.80.9-0.6-0.4
Delay disc. indifference point, 2s delay0.50.51.3-0.1-0.6-1.1
Delay disc. indifference point, 24s delay4.55.17.51.4-2.7-2.4
Delay disc. indifference point, 4s delay0.30.30.80.90.4-0.2
Delay disc. indifference point, 8s delay1.01.21.70.7-1.3-1.2
Indifference point function ln k1.32.43.01.1-1.7-1.7
Indifference point function log k1.32.43.01.1-1.7-1.7
Patch foraging total patch changes 0 sec0.10.20.40.70.10.4
Patch foraging total patch changes 12 sec2.33.04.7-0.12.02.2
Patch foraging total patch changes 18 sec0.20.20.4-0.10.60.6
Patch foraging total patch changes 24 sec0.71.21.9-0.31.31.4
Patch foraging total patch changes 6 sec1.52.33.6-0.11.91.8
Patch foraging time to switch 0 sec0.81.73.0-0.4-1.4-1.7
Patch foraging water rate 0 sec0.71.44.02.0-0.00.3
Patch foraging water rate 12 sec0.00.10.2-0.20.40.2
Patch foraging water rate 18 sec0.91.53.31.80.60.9
Patch foraging water rate 24 sec0.10.10.20.20.10.4
Patch foraging water rate 6 sec0.30.40.50.70.50.6
Seeking ratio, delayed vs. immediate footshock1.92.32.8-1.51.41.7
Distance traveled before self-admin0.00.00.1-0.2-0.20.0
Distance traveled after self-admin0.40.51.2-0.30.41.1
Extensor digitorum longus weight1.14.44.72.2-2.2-1.9
Bone: elastic displacement1.11.32.00.8-1.4-1.2
Bone: elastic work1.51.92.51.2-1.6-1.3
Bone: endosteal estimation0.10.20.40.7-0.4-0.1
Bone: endosteal perimeter0.20.40.80.30.60.9
Epididymis fat weight8.528.941.2-6.44.94.6
Delta time in closed arm before/after self-admin0.10.10.30.30.10.5
Delta time in open arm before/after self-admin0.40.41.1-1.00.2-0.2
Diff in mean of infusions in LGA sessions0.00.00.10.40.00.1
Delay discount exponential model param1.01.11.6-0.91.01.3
Extinction: sum of active levers before priming0.80.92.21.5-0.3-0.5
Active lever presses in extinction session 60.30.30.70.80.4-0.1
Bone: final force0.30.50.9-0.60.90.6
Bone: final moment0.20.30.5-0.50.70.5
Food consumed during 24 hour testing period1.01.42.0-0.81.41.3
Glucose0.40.71.9-1.4-0.1-0.3
Heart weight1.01.62.4-1.51.21.0
Delay discount hyperbolic model param0.70.81.3-0.60.81.1
Intermittent access intake day 1-15 change1.83.76.81.0-2.6-1.9
Intermittent access intake escalation1.53.25.80.8-2.4-1.7
Intermittent access intake escalation 22.93.35.50.3-2.3-2.1
Intermitt. access day 1 inactive lever presses0.10.50.9-0.10.90.8
Intermitt. access day 15 inactive lever presses0.71.52.60.01.41.6
Intermitt. access escalation Index0.60.91.9-1.40.80.4
Intermittent access day 1 total infusions0.50.72.11.5-0.1-0.3
Intermittent access day 15 total infusions1.92.83.41.5-1.8-1.7
Intermittent access terminal intake (last 3 days)1.41.92.21.5-1.5-1.1
Intermittent access total infusions2.22.63.82.0-1.5-1.3
Intermittent access day 1 locomotion0.60.70.80.8-0.9-0.9
Intermittent access day 15 total locomotion0.10.20.40.0-0.5-0.6
Intermittent access total locomotion1.61.92.71.2-1.3-1.7
Intermittent access standard deviation0.61.21.61.2-1.3-0.7
Left kidney weight0.10.30.6-0.80.40.2
Right kidney weight0.42.02.7-1.61.31.3
Cocaine induced anxiety1.82.63.51.0-1.9-1.8
Post-drug Anxiety0.70.71.4-0.50.61.2
Baseline Anxiety6.57.610.6-2.12.73.3
Tail length0.20.81.00.9-0.7-1.0
Length with tail0.00.00.10.10.2-0.2
Length without tail0.20.60.90.40.80.9
Times rat made contact with spout1.11.33.61.9-0.3-0.4
Lifetime Intake1.72.03.71.9-1.2-1.0
Liver weight, left0.91.62.0-1.11.21.4
Liver weight, right1.52.77.8-2.8-0.5-0.1
Locomotor activity0.91.41.6-1.31.11.1
Locomotor testing distance0.40.80.8-0.90.90.9
Locomotor testing rearing0.10.20.3-0.50.30.3
Locomotion in novel chamber0.10.20.3-0.5-0.2-0.6
Locomotion in novel chamber post-restriction0.50.81.2-1.10.90.6
Fecal boli incidents, locomotor time 13.24.77.21.7-2.0-2.7
Change in fecal boli incidents, locomotor task2.92.85.6-0.11.72.4
Time >=10cm from walls, locomotor time 11.61.73.9-0.2-2.0-1.1
Bouts of movement, locomotor time 10.80.92.11.4-0.8-0.4
Total resting periods, locomotor time 10.91.01.91.4-0.8-0.7
Rest time, locomotor task time 10.60.71.00.9-0.6-1.0
Distance moved, locomotor task time 10.60.91.6-1.31.00.4
Vertical activity count, locomotor time 10.20.40.6-0.8-0.3-0.7
Time >=10cm from walls, locomotor time 21.42.14.90.2-2.2-1.2
Bouts of movement, locomotor time 20.10.10.30.30.0-0.6
Total resting periods, locomotor time 20.10.10.20.30.1-0.5
Rest time, locomotor task time 20.20.30.50.2-0.5-0.7
Distance moved, locomotor task time 20.10.20.4-0.30.60.2
Vertical activity count, locomotor time 20.20.30.90.0-0.3-0.9
Light reinforcement 10.10.30.30.5-0.5-0.5
Light reinforcement 20.81.31.51.0-1.2-1.2
Bone: marrow area0.10.20.40.7-0.4-0.1
Bone: maximum diameter0.61.01.90.21.11.4
Bone: maximum force0.10.10.40.00.60.2
Bone: maximum moment0.00.00.10.10.40.1
Mean time between licks in bursts0.20.60.8-0.90.90.4
Mean num. licks in bursts2.03.27.62.8-1.2-0.7
Cd content in liver0.70.82.3-1.5-0.3-0.0
Co content in liver1.31.52.21.1-1.1-1.5
Cu content in liver1.11.32.6-0.6-1.0-1.6
Fe content in liver0.91.12.71.7-0.4-0.6
K content in liver1.81.73.4-0.81.91.1
Mg content in liver0.40.41.2-0.1-0.1-1.1
Mn content in liver0.50.61.3-0.4-1.1-0.6
Na content in liver0.70.71.61.20.60.5
Rb content in liver0.50.61.40.11.20.6
Se content in liver0.00.00.00.10.10.0
Sr content in liver2.92.53.31.8-1.6-1.3
Zn content in liver1.31.52.3-1.51.40.6
Bone: minimum diameter0.71.42.4-1.60.90.9
Time in familiar zone, hab. session 10.20.20.5-0.70.3-0.3
Time in novel zone, hab. session 10.20.20.4-0.60.00.6
Total zone transitions, hab. session 10.20.30.50.70.50.6
Total locomotion distance, hab. session 10.30.41.01.0-0.2-0.1
Locomotion velocity, hab. session 10.40.61.91.4-0.00.1
Time in familiar zone, hab. session 20.50.50.80.2-0.9-0.8
Time in novel zone, hab. session 20.50.51.5-1.2-0.3-0.2
Total zone transitions, hab. session 20.50.61.41.20.60.5
Total locomotion distance, hab. session 20.50.71.81.30.40.4
Locomotion velocity, hab. session 20.91.22.51.60.70.8
Novel to familiar place preference ratio0.20.30.7-0.80.0-0.3
Novelty place preference0.50.51.4-1.20.30.0
Time in novel zone, NPP test0.40.51.3-1.2-0.0-0.3
Total zone transitions, NPP test0.40.61.51.20.30.6
Total locomotion distance, NPP test0.71.02.81.7-0.4-0.1
Locomotion velocity, NPP test1.01.43.92.00.10.5
Intraocular pressure1.01.44.2-2.1-0.30.1
Delta distance traveled before/after self-admin1.81.93.2-0.71.41.8
Delta ambulatory time before/after self-admin0.20.20.7-0.00.20.8
Parametrial fat weight11.928.150.3-7.14.24.1
Pavlov. Cond. lever latency0.20.30.8-0.90.10.0
Pavlov. Cond. magazine entry latency0.10.20.30.6-0.4-0.2
Pavlov. Cond. change in total contacts2.83.04.60.4-2.0-2.1
Pavlov. Cond. index score0.40.51.01.0-0.6-0.5
Pavlov. Cond. latency score0.30.40.90.9-0.5-0.4
Pavlov. Cond. lever contacts0.30.30.91.0-0.10.1
Pavlov. Cond. magazine entry number0.50.70.9-0.90.90.6
Pavlov. Cond. intertrial magazine entries1.21.42.11.5-1.0-1.1
Pavlov. Cond. lever-magazine prob. diff.0.70.91.41.2-0.8-0.8
Pavlov. Cond. response bias0.91.12.11.5-0.8-0.7
Pavlov. Cond. lever latency0.40.60.7-0.7-0.9-0.6
Pavlov. Cond. magazine entry latency0.50.60.8-0.90.80.5
Pavlov. Cond. change in total contacts0.40.61.0-0.61.00.7
Pavlov. Cond. index score0.30.51.0-0.01.00.6
Pavlov. Cond. latency score0.30.40.90.01.00.5
Pavlov. Cond. lever contacts0.60.81.40.41.21.0
Pavlov. Cond. magazine entry number0.50.70.90.9-0.9-0.6
Pavlov. Cond. intertrial magazine entries0.60.81.4-0.5-1.2-0.9
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.10.90.5
Pavlov. Cond. response bias0.30.50.80.30.90.7
Time in closed arm before self-admin0.40.41.10.31.10.4
Time in closed arm after self-admin2.02.13.2-0.81.81.6
Time in open arm before self-admin0.10.20.4-0.0-0.60.3
Time in open arm after self-admin0.91.01.70.0-1.3-1.1
Bone: periosteal estimation0.00.00.10.20.00.3
Bone: periosteal perimeter0.81.32.10.61.31.4
Bone: post-yield work0.81.23.41.8-0.1-0.4
Progressive ratio test 1 active lever presses0.40.51.41.20.10.0
Progressive ratio test 1 breakpoint0.40.51.61.30.0-0.1
Progressive ratio test 1 inactive lever presses0.81.11.51.21.10.9
Progressive ratio test 2 active lever presses2.32.73.51.4-1.9-1.6
Progressive ratio test 2 breakpoint2.42.73.81.3-1.9-1.6
Progressive ratio test 2 inactive lever presses0.30.51.11.0-0.6-0.4
Incentive Sensitization - Responses3.55.09.20.3-3.0-2.4
Incentive Sensitization - Breakpoint3.64.78.80.2-3.0-2.3
Sum of active levers in priming session hrs 5-61.31.22.60.4-1.0-1.6
Progressive ratio0.61.01.2-0.91.11.0
Food seeking constrained by brief footshock3.54.36.72.6-1.4-2.1
Seeking ratio, punishment vs. effort1.01.52.91.7-0.8-1.0
Retroperitoneal fat weight15.064.1112.1-10.66.66.0
Reaction time number correct0.00.10.1-0.4-0.3-0.1
Reaction time mean minus median1.23.03.5-1.5-1.9-1.9
Reaction time mean minus median AUC0.61.42.7-1.6-0.9-0.9
Reaction time num false alarms1.62.23.2-0.61.81.8
Reaction time num false alarms AUC1.11.82.5-0.61.61.6
Reaction time trials correct on left0.00.10.1-0.4-0.3-0.1
Reaction time trials on left0.10.10.2-0.4-0.4-0.2
Reaction time mean4.36.810.1-0.9-3.1-3.2
Reaction time mean AUC4.06.49.4-0.9-3.0-3.1
Median of all reaction times5.78.012.4-0.5-3.4-3.5
Reaction time omissions1.01.52.0-1.1-1.1-1.4
Reaction time false alarm rate1.31.82.7-0.31.61.6
Reaction time premature initiation rate1.21.72.01.31.21.4
Reaction time premature initiations0.50.80.91.00.81.0
Std. dev. reaction times2.24.15.3-1.4-2.3-2.3
Reaction time trials completed0.10.10.2-0.4-0.4-0.2
Reaction time trials AUC0.10.20.3-0.5-0.6-0.3
Run reversals in cocaine runway, females0.40.41.01.00.10.2
Run reversals in cocaine runway, males0.30.30.50.20.70.6
Latency to leave start box in cocaine runway0.70.82.01.4-0.5-0.5
Latency to leave start box in cocaine runway, F0.50.60.90.90.70.7
Latency to leave start box in cocaine runway, M2.32.12.71.0-1.6-1.6
Std. dev. time between licks in bursts0.00.00.1-0.30.20.0
Total sessions with >9 infusions1.61.92.81.7-1.4-1.0
Short access day 1 total inactive lever presses0.70.92.71.7-0.1-0.1
Short access day 10 total inactive lever presses0.00.10.20.3-0.1-0.4
Short access day 1 total infusions0.60.81.81.3-0.6-0.5
Short access day 10 total infusions1.21.63.61.9-0.8-0.7
Short access total infusions0.70.82.21.5-0.5-0.2
Short access day 1 locomotion0.91.21.71.1-0.8-1.3
Short access day 10 total locomotion1.73.25.20.9-1.9-2.3
Short access total locomotion3.13.75.71.1-2.0-2.4
One hour access (0.3 mA shock)5.96.88.52.0-2.9-2.8
Compulsive drug intake0.60.70.9-0.9-0.5-1.0
One hour access (shock baseline)2.43.74.72.2-2.0-1.5
Social response proportion0.50.50.90.1-0.8-0.9
Social responses0.20.30.6-0.8-0.1-0.3
Social time0.91.31.70.9-1.1-1.3
Soleus weight2.16.313.83.7-1.8-1.4
Bone: stiffness0.81.32.1-1.01.41.0
Tibialis anterior weight0.93.04.82.2-1.6-1.2
Time to tail flick, vehicle, before self-admin0.10.10.2-0.1-0.1-0.4
Time to tail flick, vehicle, after self-admin0.81.11.5-1.20.71.1
Time to tail flick, test, before self-admin1.92.02.61.3-1.3-1.6
Time to tail flick, test, after self-admin3.53.74.71.6-2.2-2.0
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.40.20.6
Delta time to tail flick, test, before/after SA1.71.72.41.3-1.6-1.1
Tibia length1.33.55.8-2.41.51.6
Ambulatory time before self-admin0.00.00.1-0.3-0.20.0
Ambulatory time after self-admin0.60.71.3-0.70.71.1
Bone: tissue strength0.20.20.40.1-0.6-0.5
Total heroin consumption5.16.08.51.6-2.6-2.9
Bone: trabecular number3.25.46.72.1-2.2-2.6
Bone: trabecular spacing1.41.92.8-1.71.11.2
Bone: trabecular thickness1.61.92.31.5-1.2-1.5
Bone: trabecular tissue density0.20.40.50.40.70.7
Water consumed over 24 hours0.20.30.4-0.4-0.4-0.6
Number of responses in last shaping day0.30.30.91.0-0.3-0.0