LOC134479335

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC134479335 0.04 0.03 1.5e-04 0.02 0.02 0.01 0.02 2.6e-03 1.2e-03 2.9e-02 3.2e-03
2 Brain gene expression LOC134479335 0.35 0.1 6.0e-14 0.16 0.16 0.16 0.16 7.0e-15 9.3e-15 2.1e-14 9.0e-15
3 RMTg gene expression LOC134479335 0.38 0.17 1.0e-03 0.2 0.09 0.14 0.16 5.8e-06 2.9e-03 1.2e-04 5.9e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density3.56.58.42.12.62.9
Area under the delay curve0.40.61.00.50.81.0
BMI with tail1.34.410.1-3.2-0.8-1.6
BMI without tail0.52.46.6-2.6-0.2-0.8
Body weight0.83.47.4-2.7-0.9-1.4
Weight adjusted by age0.10.30.60.3-0.5-0.7
Bone surface1.02.03.30.41.81.6
Bone volume2.04.15.51.32.32.3
Breakpoint value in progressive ratio session1.83.34.81.02.02.2
Number of licking bursts0.51.53.2-1.8-1.0-0.5
Context. condit. distance diff. score0.40.40.80.40.90.5
Locomotion velocity, session 10.40.41.3-1.10.10.0
Locomotion distance, session 10.20.20.30.50.50.3
Locomotion velocity, session 20.20.30.6-0.8-0.30.2
Locomotion distance, session 20.20.30.5-0.10.60.7
Locomotion velocity, session 30.10.10.30.5-0.1-0.3
Locomotion distance, session 30.20.30.60.80.40.2
Stereotopy head waving bouts, day 31.72.02.31.51.31.4
Stereotopy head waving duration, day 30.00.10.10.4-0.1-0.1
Locomotion velocity, session 70.30.30.60.00.80.6
Locomotion distance, session 70.20.30.8-0.9-0.1-0.1
Stereotopy head waving bouts, day 70.00.00.0-0.20.0-0.0
Stereotopy head waving duration, day 70.20.20.30.3-0.5-0.6
Locomotion velocity, session 80.70.91.30.41.11.1
Locomotion distance, session 81.01.51.71.31.31.0
Degree of sensitization distance1.41.54.0-2.0-0.5-0.4
Degree of sensitization stereotypy0.50.50.8-0.9-0.5-0.7
Conditioned locomotion0.91.12.61.60.60.6
Cocaine response after cond. corrected0.50.81.1-1.00.70.9
Cocaine response after cond. not corrected0.20.20.3-0.30.60.6
Cocaine response before conditioning1.21.43.31.8-0.6-0.8
Saline control response0.81.12.61.60.60.6
Bone: connectivity density2.43.85.80.72.32.4
Bone: cortical apparent density2.23.55.3-0.42.22.3
Bone: cortical area0.30.50.5-0.7-0.7-0.7
Bone: cortical porosity0.20.30.60.8-0.1-0.4
Bone: cortical porosity0.40.40.80.90.50.3
Bone: cortical thickness0.40.61.5-1.2-0.5-0.4
Bone: cortical thickness0.40.50.70.30.80.8
Bone: cortical tissue density2.23.55.2-0.52.32.3
Condit. Reinf. active minus inactive responses2.22.56.1-2.5-0.7-0.9
Condit. Reinf. active-inactive response ratio1.01.02.7-1.6-0.3-0.5
Condit. Reinf. active responses0.60.82.1-1.5-0.4-0.4
Condit. Reinf. inactive responses0.30.40.70.40.50.8
Incentive salience index mean0.70.81.3-1.2-0.7-0.8
Condit. Reinf. lever presses0.40.61.51.2-0.4-0.4
Condit. Reinf. active minus inactive responses0.30.51.0-1.00.60.4
Condit. Reinf. active-inactive response ratio0.40.60.8-0.6-0.8-0.9
Condit. Reinf. active responses0.20.30.7-0.80.40.3
Condit. Reinf. inactive responses0.10.10.30.00.40.5
Condit. Reinf. lever presses0.10.10.2-0.00.40.4
Condit. Reinf. lever reinforcers received0.40.61.1-1.10.60.5
Conditioned reinforcement - actives0.62.53.61.41.91.5
Conditioned reinforcement - inactives0.41.02.01.41.00.3
Conditioned locomotion1.92.94.41.42.11.5
Patch foraging indifference point 0 sec0.10.30.60.8-0.1-0.4
Patch foraging indifference point AUC1.02.33.7-0.2-1.8-1.9
Delay disc. indifference point, 0s delay0.20.30.7-0.8-0.10.2
Delay disc. indifference point, 16s delay0.30.50.80.90.60.4
Delay disc. indifference point, 2s delay0.50.51.3-0.10.61.1
Delay disc. indifference point, 24s delay3.25.17.51.42.72.4
Delay disc. indifference point, 4s delay0.30.30.80.9-0.40.2
Delay disc. indifference point, 8s delay0.71.21.70.71.31.2
Indifference point function ln k0.82.43.01.11.71.7
Indifference point function log k0.82.43.01.11.71.7
Patch foraging total patch changes 0 sec0.10.20.40.7-0.1-0.4
Patch foraging total patch changes 12 sec2.23.04.7-0.1-2.0-2.2
Patch foraging total patch changes 18 sec0.10.20.4-0.1-0.6-0.6
Patch foraging total patch changes 24 sec0.41.21.9-0.3-1.3-1.4
Patch foraging total patch changes 6 sec1.32.33.6-0.1-1.9-1.8
Patch foraging time to switch 0 sec0.51.73.0-0.41.41.7
Patch foraging water rate 0 sec0.41.44.02.00.0-0.3
Patch foraging water rate 12 sec0.00.10.2-0.2-0.4-0.2
Patch foraging water rate 18 sec0.71.53.31.8-0.6-0.9
Patch foraging water rate 24 sec0.10.10.20.2-0.1-0.4
Patch foraging water rate 6 sec0.30.40.50.7-0.5-0.6
Seeking ratio, delayed vs. immediate footshock1.62.32.8-1.5-1.4-1.7
Distance traveled before self-admin0.00.00.1-0.20.2-0.0
Distance traveled after self-admin0.30.51.2-0.3-0.4-1.1
Extensor digitorum longus weight1.14.44.72.22.21.9
Bone: elastic displacement1.01.32.00.81.41.2
Bone: elastic work1.41.92.51.21.61.3
Bone: endosteal estimation0.10.20.40.70.40.1
Bone: endosteal perimeter0.20.40.80.3-0.6-0.9
Epididymis fat weight5.728.941.2-6.4-4.9-4.6
Delta time in closed arm before/after self-admin0.10.10.30.3-0.1-0.5
Delta time in open arm before/after self-admin0.30.41.1-1.0-0.20.2
Diff in mean of infusions in LGA sessions0.00.00.10.4-0.0-0.1
Delay discount exponential model param0.81.11.6-0.9-1.0-1.3
Extinction: sum of active levers before priming0.60.92.21.50.30.5
Active lever presses in extinction session 60.30.30.70.8-0.40.1
Bone: final force0.30.50.9-0.6-0.9-0.6
Bone: final moment0.20.30.5-0.5-0.7-0.5
Food consumed during 24 hour testing period0.71.42.0-0.8-1.4-1.3
Glucose0.40.71.9-1.40.10.3
Heart weight1.01.62.4-1.5-1.2-1.0
Delay discount hyperbolic model param0.60.81.3-0.6-0.8-1.1
Intermittent access intake day 1-15 change0.73.76.81.02.61.9
Intermittent access intake escalation0.63.25.80.82.41.7
Intermittent access intake escalation 22.03.35.50.32.32.1
Intermitt. access day 1 inactive lever presses0.00.50.9-0.1-0.9-0.8
Intermitt. access day 15 inactive lever presses0.31.52.60.0-1.4-1.6
Intermitt. access escalation Index0.30.91.9-1.4-0.8-0.4
Intermittent access day 1 total infusions0.20.72.11.50.10.3
Intermittent access day 15 total infusions1.22.83.41.51.81.7
Intermittent access terminal intake (last 3 days)1.11.92.21.51.51.1
Intermittent access total infusions2.22.63.82.01.51.3
Intermittent access day 1 locomotion0.40.70.80.80.90.9
Intermittent access day 15 total locomotion0.10.20.40.00.50.6
Intermittent access total locomotion1.61.92.71.21.31.7
Intermittent access standard deviation0.21.21.61.21.30.7
Left kidney weight0.00.30.6-0.8-0.4-0.2
Right kidney weight0.32.02.7-1.6-1.3-1.3
Cocaine induced anxiety1.02.63.51.01.91.8
Post-drug Anxiety0.60.71.4-0.5-0.6-1.2
Baseline Anxiety4.57.610.6-2.1-2.7-3.3
Tail length0.10.81.00.90.71.0
Length with tail0.00.00.10.1-0.20.2
Length without tail0.10.60.90.4-0.8-0.9
Times rat made contact with spout1.11.33.61.90.30.4
Lifetime Intake1.62.03.71.91.21.0
Liver weight, left0.91.62.0-1.1-1.2-1.4
Liver weight, right1.52.77.8-2.80.50.1
Locomotor activity0.91.41.6-1.3-1.1-1.1
Locomotor testing distance0.30.80.8-0.9-0.9-0.9
Locomotor testing rearing0.00.20.3-0.5-0.3-0.3
Locomotion in novel chamber0.10.20.3-0.50.20.6
Locomotion in novel chamber post-restriction0.20.81.2-1.1-0.9-0.6
Fecal boli incidents, locomotor time 11.84.77.21.72.02.7
Change in fecal boli incidents, locomotor task2.72.85.6-0.1-1.7-2.4
Time >=10cm from walls, locomotor time 11.41.73.9-0.22.01.1
Bouts of movement, locomotor time 10.70.92.11.40.80.4
Total resting periods, locomotor time 10.81.01.91.40.80.7
Rest time, locomotor task time 10.40.71.00.90.61.0
Distance moved, locomotor task time 10.30.91.6-1.3-1.0-0.4
Vertical activity count, locomotor time 10.10.40.6-0.80.30.7
Time >=10cm from walls, locomotor time 20.72.14.90.22.21.2
Bouts of movement, locomotor time 20.00.10.30.3-0.00.6
Total resting periods, locomotor time 20.00.10.20.3-0.10.5
Rest time, locomotor task time 20.20.30.50.20.50.7
Distance moved, locomotor task time 20.10.20.4-0.3-0.6-0.2
Vertical activity count, locomotor time 20.10.30.90.00.30.9
Light reinforcement 10.10.30.30.50.50.5
Light reinforcement 20.61.31.51.01.21.2
Bone: marrow area0.10.20.40.70.40.1
Bone: maximum diameter0.51.01.90.2-1.1-1.4
Bone: maximum force0.10.10.40.0-0.6-0.2
Bone: maximum moment0.00.00.10.1-0.4-0.1
Mean time between licks in bursts0.10.60.8-0.9-0.9-0.4
Mean num. licks in bursts1.23.27.62.81.20.7
Cd content in liver0.70.82.3-1.50.30.0
Co content in liver1.31.52.21.11.11.5
Cu content in liver1.11.32.6-0.61.01.6
Fe content in liver0.91.12.71.70.40.6
K content in liver1.81.73.4-0.8-1.9-1.1
Mg content in liver0.40.41.2-0.10.11.1
Mn content in liver0.50.61.3-0.41.10.6
Na content in liver0.60.71.61.2-0.6-0.5
Rb content in liver0.50.61.40.1-1.2-0.6
Se content in liver0.00.00.00.1-0.1-0.0
Sr content in liver2.92.53.31.81.61.3
Zn content in liver1.31.52.3-1.5-1.4-0.6
Bone: minimum diameter0.71.42.4-1.6-0.9-0.9
Time in familiar zone, hab. session 10.20.20.5-0.7-0.30.3
Time in novel zone, hab. session 10.20.20.4-0.6-0.0-0.6
Total zone transitions, hab. session 10.20.30.50.7-0.5-0.6
Total locomotion distance, hab. session 10.30.41.01.00.20.1
Locomotion velocity, hab. session 10.40.61.91.40.0-0.1
Time in familiar zone, hab. session 20.40.50.80.20.90.8
Time in novel zone, hab. session 20.50.51.5-1.20.30.2
Total zone transitions, hab. session 20.50.61.41.2-0.6-0.5
Total locomotion distance, hab. session 20.50.71.81.3-0.4-0.4
Locomotion velocity, hab. session 20.91.22.51.6-0.7-0.8
Novel to familiar place preference ratio0.20.30.7-0.8-0.00.3
Novelty place preference0.40.51.4-1.2-0.3-0.0
Time in novel zone, NPP test0.40.51.3-1.20.00.3
Total zone transitions, NPP test0.40.61.51.2-0.3-0.6
Total locomotion distance, NPP test0.71.02.81.70.40.1
Locomotion velocity, NPP test1.01.43.92.0-0.1-0.5
Intraocular pressure0.91.44.2-2.10.3-0.1
Delta distance traveled before/after self-admin1.81.93.2-0.7-1.4-1.8
Delta ambulatory time before/after self-admin0.10.20.7-0.0-0.2-0.8
Parametrial fat weight11.928.150.3-7.1-4.2-4.1
Pavlov. Cond. lever latency0.20.30.8-0.9-0.1-0.0
Pavlov. Cond. magazine entry latency0.10.20.30.60.40.2
Pavlov. Cond. change in total contacts2.83.04.60.42.02.1
Pavlov. Cond. index score0.40.51.01.00.60.5
Pavlov. Cond. latency score0.30.40.90.90.50.4
Pavlov. Cond. lever contacts0.30.30.91.00.1-0.1
Pavlov. Cond. magazine entry number0.50.70.9-0.9-0.9-0.6
Pavlov. Cond. intertrial magazine entries1.21.42.11.51.01.1
Pavlov. Cond. lever-magazine prob. diff.0.70.91.41.20.80.8
Pavlov. Cond. response bias0.91.12.11.50.80.7
Pavlov. Cond. lever latency0.40.60.7-0.70.90.6
Pavlov. Cond. magazine entry latency0.40.60.8-0.9-0.8-0.5
Pavlov. Cond. change in total contacts0.20.61.0-0.6-1.0-0.7
Pavlov. Cond. index score0.30.51.0-0.0-1.0-0.6
Pavlov. Cond. latency score0.20.40.90.0-1.0-0.5
Pavlov. Cond. lever contacts0.60.81.40.4-1.2-1.0
Pavlov. Cond. magazine entry number0.50.70.90.90.90.6
Pavlov. Cond. intertrial magazine entries0.40.81.4-0.51.20.9
Pavlov. Cond. lever-magazine prob. diff.0.20.40.8-0.1-0.9-0.5
Pavlov. Cond. response bias0.30.50.80.3-0.9-0.7
Time in closed arm before self-admin0.30.41.10.3-1.1-0.4
Time in closed arm after self-admin1.92.13.2-0.8-1.8-1.6
Time in open arm before self-admin0.10.20.4-0.00.6-0.3
Time in open arm after self-admin0.91.01.70.01.31.1
Bone: periosteal estimation0.00.00.10.2-0.0-0.3
Bone: periosteal perimeter0.71.32.10.6-1.3-1.4
Bone: post-yield work0.71.23.41.80.10.4
Progressive ratio test 1 active lever presses0.30.51.41.2-0.1-0.0
Progressive ratio test 1 breakpoint0.30.51.61.3-0.00.1
Progressive ratio test 1 inactive lever presses0.41.11.51.2-1.1-0.9
Progressive ratio test 2 active lever presses1.92.73.51.41.91.6
Progressive ratio test 2 breakpoint2.12.73.81.31.91.6
Progressive ratio test 2 inactive lever presses0.20.51.11.00.60.4
Incentive Sensitization - Responses1.85.09.20.33.02.4
Incentive Sensitization - Breakpoint2.14.78.80.23.02.3
Sum of active levers in priming session hrs 5-61.31.22.60.41.01.6
Progressive ratio0.31.01.2-0.9-1.1-1.0
Food seeking constrained by brief footshock3.54.36.72.61.42.1
Seeking ratio, punishment vs. effort0.71.52.91.70.81.0
Retroperitoneal fat weight14.364.1112.1-10.6-6.6-6.0
Reaction time number correct0.00.10.1-0.40.30.1
Reaction time mean minus median0.53.03.5-1.51.91.9
Reaction time mean minus median AUC0.21.42.7-1.60.90.9
Reaction time num false alarms1.32.23.2-0.6-1.8-1.8
Reaction time num false alarms AUC0.81.82.5-0.6-1.6-1.6
Reaction time trials correct on left0.00.10.1-0.40.30.1
Reaction time trials on left0.00.10.2-0.40.40.2
Reaction time mean3.16.810.1-0.93.13.2
Reaction time mean AUC2.76.49.4-0.93.03.1
Median of all reaction times5.18.012.4-0.53.43.5
Reaction time omissions0.91.52.0-1.11.11.4
Reaction time false alarm rate1.31.82.7-0.3-1.6-1.6
Reaction time premature initiation rate1.11.72.01.3-1.2-1.4
Reaction time premature initiations0.30.80.91.0-0.8-1.0
Std. dev. reaction times1.24.15.3-1.42.32.3
Reaction time trials completed0.00.10.2-0.40.40.2
Reaction time trials AUC0.10.20.3-0.50.60.3
Run reversals in cocaine runway, females0.30.41.01.0-0.1-0.2
Run reversals in cocaine runway, males0.30.30.50.2-0.7-0.6
Latency to leave start box in cocaine runway0.60.82.01.40.50.5
Latency to leave start box in cocaine runway, F0.50.60.90.9-0.7-0.7
Latency to leave start box in cocaine runway, M2.22.12.71.01.61.6
Std. dev. time between licks in bursts0.00.00.1-0.3-0.2-0.0
Total sessions with >9 infusions1.51.92.81.71.41.0
Short access day 1 total inactive lever presses0.50.92.71.70.10.1
Short access day 10 total inactive lever presses0.00.10.20.30.10.4
Short access day 1 total infusions0.40.81.81.30.60.5
Short access day 10 total infusions1.01.63.61.90.80.7
Short access total infusions0.60.82.21.50.50.2
Short access day 1 locomotion0.71.21.71.10.81.3
Short access day 10 total locomotion0.83.25.20.91.92.3
Short access total locomotion2.43.75.71.12.02.4
One hour access (0.3 mA shock)5.76.88.52.02.92.8
Compulsive drug intake0.50.70.9-0.90.51.0
One hour access (shock baseline)1.43.74.72.22.01.5
Social response proportion0.40.50.90.10.80.9
Social responses0.20.30.6-0.80.10.3
Social time0.81.31.70.91.11.3
Soleus weight2.16.313.83.71.81.4
Bone: stiffness0.71.32.1-1.0-1.4-1.0
Tibialis anterior weight0.93.04.82.21.61.2
Time to tail flick, vehicle, before self-admin0.10.10.2-0.10.10.4
Time to tail flick, vehicle, after self-admin0.51.11.5-1.2-0.7-1.1
Time to tail flick, test, before self-admin1.72.02.61.31.31.6
Time to tail flick, test, after self-admin3.53.74.71.62.22.0
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.4-0.2-0.6
Delta time to tail flick, test, before/after SA1.41.72.41.31.61.1
Tibia length1.33.55.8-2.4-1.5-1.6
Ambulatory time before self-admin0.00.00.1-0.30.2-0.0
Ambulatory time after self-admin0.50.71.3-0.7-0.7-1.1
Bone: tissue strength0.20.20.40.10.60.5
Total heroin consumption5.16.08.51.62.62.9
Bone: trabecular number2.85.46.72.12.22.6
Bone: trabecular spacing1.31.92.8-1.7-1.1-1.2
Bone: trabecular thickness1.41.92.31.51.21.5
Bone: trabecular tissue density0.20.40.50.4-0.7-0.7
Water consumed over 24 hours0.10.30.4-0.40.40.6
Number of responses in last shaping day0.30.30.91.00.30.0