LOC134479110

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability LOC134479110 0.05 0.04 1.8e-04 0.04 0.04 0.04 0.04 2.4e-04 2.2e-04 1.9e-04 2.4e-04
2 Brain gene expression LOC134479110 0.03 0.03 7.3e-03 0.02 0.02 0.02 0.02 4.8e-03 5.4e-03 6.9e-03 6.2e-03
3 Adipose gene expression LOC134479110 0.08 0.07 2.5e-08 0.06 0.06 0.05 0.05 5.3e-07 5.3e-07 2.8e-06 2.3e-06
4 Adipose mRNA stability LOC134479110 0.15 0.11 1.1e-15 0.13 0.13 0.12 0.13 4.2e-14 5.4e-14 9.1e-14 4.0e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.57.78.6-2.7-2.7-2.7-2.9
Area under the delay curve1.72.02.0-1.4-1.4-1.4-1.4
BMI with tail0.10.40.40.60.70.60.5
BMI without tail0.41.21.41.11.21.10.9
Body weight1.56.56.72.62.52.52.6
Weight adjusted by age0.10.20.20.40.40.40.4
Bone surface1.93.53.7-1.9-1.9-1.9-1.7
Bone volume2.24.04.0-2.0-2.0-2.0-2.0
Breakpoint value in progressive ratio session0.40.50.7-0.7-0.7-0.7-0.8
Number of licking bursts0.10.20.2-0.5-0.5-0.5-0.5
Context. condit. distance diff. score0.00.00.20.10.10.10.4
Locomotion velocity, session 10.20.20.20.50.50.50.3
Locomotion distance, session 11.82.32.5-1.5-1.5-1.5-1.6
Locomotion velocity, session 20.20.20.30.40.40.40.6
Locomotion distance, session 20.00.00.00.20.10.10.0
Locomotion velocity, session 30.40.50.5-0.7-0.7-0.7-0.7
Locomotion distance, session 30.70.81.0-0.9-0.9-0.9-1.0
Stereotopy head waving bouts, day 31.21.41.6-1.2-1.2-1.2-1.0
Stereotopy head waving duration, day 30.00.00.0-0.2-0.2-0.2-0.0
Locomotion velocity, session 70.60.70.7-0.9-0.8-0.8-0.8
Locomotion distance, session 70.00.00.10.20.20.20.3
Stereotopy head waving bouts, day 70.00.00.1-0.1-0.1-0.1-0.3
Stereotopy head waving duration, day 70.40.50.7-0.6-0.6-0.6-0.9
Locomotion velocity, session 80.00.00.00.10.10.10.2
Locomotion distance, session 80.20.20.3-0.5-0.5-0.5-0.3
Degree of sensitization distance1.21.21.41.11.11.11.2
Degree of sensitization stereotypy0.00.00.10.20.30.3-0.0
Conditioned locomotion3.33.84.2-2.1-2.1-2.1-1.6
Cocaine response after cond. corrected1.82.22.6-1.5-1.4-1.4-1.6
Cocaine response after cond. not corrected3.23.83.9-2.0-2.0-2.0-1.9
Cocaine response before conditioning0.81.01.0-1.0-1.0-1.0-0.9
Saline control response0.50.71.0-0.8-0.8-0.8-1.0
Bone: connectivity density4.26.67.4-2.5-2.5-2.5-2.7
Bone: cortical apparent density0.71.01.1-1.0-1.0-1.0-1.0
Bone: cortical area0.71.01.0-1.0-1.0-1.0-1.0
Bone: cortical porosity0.90.91.0-1.0-0.9-0.9-1.0
Bone: cortical porosity0.91.01.2-1.0-1.0-1.0-1.1
Bone: cortical thickness0.00.00.0-0.1-0.1-0.1-0.2
Bone: cortical thickness1.51.81.8-1.3-1.3-1.3-1.3
Bone: cortical tissue density0.50.70.8-0.9-0.8-0.8-0.9
Condit. Reinf. active minus inactive responses0.30.40.40.60.60.60.6
Condit. Reinf. active-inactive response ratio0.30.30.30.60.50.50.5
Condit. Reinf. active responses0.40.40.5-0.6-0.6-0.6-0.7
Condit. Reinf. inactive responses1.51.92.0-1.4-1.4-1.4-1.4
Incentive salience index mean0.10.10.2-0.3-0.3-0.3-0.4
Condit. Reinf. lever presses0.91.31.6-1.1-1.1-1.1-1.3
Condit. Reinf. active minus inactive responses3.74.85.1-2.3-2.3-2.3-1.9
Condit. Reinf. active-inactive response ratio0.81.01.1-1.1-1.1-1.1-0.7
Condit. Reinf. active responses3.24.44.8-2.2-2.2-2.2-1.8
Condit. Reinf. inactive responses1.92.42.6-1.6-1.6-1.6-1.5
Condit. Reinf. lever presses2.02.83.0-1.7-1.7-1.7-1.4
Condit. Reinf. lever reinforcers received2.73.84.1-2.0-2.0-2.0-1.7
Conditioned reinforcement - actives0.20.30.4-0.6-0.6-0.6-0.3
Conditioned reinforcement - inactives1.62.42.6-1.5-1.5-1.5-1.6
Conditioned locomotion0.40.50.60.70.70.70.8
Patch foraging indifference point 0 sec0.30.60.70.80.80.80.6
Patch foraging indifference point AUC0.50.71.5-0.7-0.6-0.7-1.2
Delay disc. indifference point, 0s delay0.40.40.40.60.60.60.6
Delay disc. indifference point, 16s delay1.21.31.4-1.1-1.1-1.1-1.2
Delay disc. indifference point, 2s delay0.00.00.00.10.10.1-0.0
Delay disc. indifference point, 24s delay5.35.96.2-2.5-2.5-2.5-2.2
Delay disc. indifference point, 4s delay0.10.20.2-0.4-0.4-0.4-0.4
Delay disc. indifference point, 8s delay1.11.31.3-1.1-1.1-1.1-1.1
Indifference point function ln k0.00.10.1-0.2-0.3-0.30.2
Indifference point function log k0.00.10.1-0.2-0.3-0.30.2
Patch foraging total patch changes 0 sec0.20.50.50.70.70.70.6
Patch foraging total patch changes 12 sec1.21.51.81.31.31.31.0
Patch foraging total patch changes 18 sec0.30.40.60.70.80.70.2
Patch foraging total patch changes 24 sec1.52.62.71.61.71.61.6
Patch foraging total patch changes 6 sec0.20.40.50.60.70.70.1
Patch foraging time to switch 0 sec0.10.20.3-0.5-0.5-0.5-0.5
Patch foraging water rate 0 sec0.10.10.20.30.40.40.4
Patch foraging water rate 12 sec0.81.82.91.21.21.21.7
Patch foraging water rate 18 sec0.20.30.80.30.30.30.9
Patch foraging water rate 24 sec2.23.13.41.81.81.81.7
Patch foraging water rate 6 sec1.01.52.11.11.11.11.4
Seeking ratio, delayed vs. immediate footshock0.60.70.80.90.90.90.7
Distance traveled before self-admin0.10.10.1-0.3-0.3-0.30.1
Distance traveled after self-admin1.31.61.71.31.31.31.2
Extensor digitorum longus weight4.818.920.7-4.3-4.3-4.3-4.6
Bone: elastic displacement0.70.80.9-0.9-0.9-0.9-0.9
Bone: elastic work0.91.21.3-1.1-1.1-1.1-1.2
Bone: endosteal estimation0.51.01.2-1.1-1.1-1.1-0.6
Bone: endosteal perimeter0.20.40.4-0.6-0.7-0.7-0.5
Epididymis fat weight15.653.654.37.37.37.37.4
Delta time in closed arm before/after self-admin0.00.00.0-0.00.00.00.0
Delta time in open arm before/after self-admin0.40.41.1-0.4-0.4-0.4-1.0
Diff in mean of infusions in LGA sessions0.00.00.10.20.20.2-0.2
Delay discount exponential model param2.63.03.01.71.71.71.7
Extinction: sum of active levers before priming1.01.11.1-1.0-1.1-1.1-1.0
Active lever presses in extinction session 60.00.00.00.20.10.10.1
Bone: final force0.10.10.2-0.3-0.3-0.3-0.5
Bone: final moment0.10.20.2-0.4-0.4-0.4-0.5
Food consumed during 24 hour testing period0.10.10.2-0.4-0.4-0.4-0.4
Glucose0.50.80.90.90.90.90.9
Heart weight2.94.44.62.12.12.12.2
Delay discount hyperbolic model param1.82.02.01.41.41.41.4
Intermittent access intake day 1-15 change0.10.10.40.10.10.10.6
Intermittent access intake escalation0.10.20.60.30.30.30.8
Intermittent access intake escalation 20.30.30.80.40.40.40.9
Intermitt. access day 1 inactive lever presses0.10.40.5-0.6-0.6-0.6-0.7
Intermitt. access day 15 inactive lever presses1.22.42.8-1.5-1.5-1.5-1.7
Intermitt. access escalation Index0.91.31.61.31.31.30.6
Intermittent access day 1 total infusions1.82.83.6-1.6-1.6-1.6-1.9
Intermittent access day 15 total infusions0.60.91.0-1.0-1.0-1.0-0.8
Intermittent access terminal intake (last 3 days)1.31.81.9-1.4-1.4-1.4-1.2
Intermittent access total infusions1.31.51.6-1.3-1.3-1.3-1.1
Intermittent access day 1 locomotion1.31.62.1-1.2-1.2-1.2-1.5
Intermittent access day 15 total locomotion0.00.00.0-0.1-0.1-0.10.0
Intermittent access total locomotion0.00.00.0-0.1-0.1-0.1-0.1
Intermittent access standard deviation0.20.40.5-0.7-0.7-0.7-0.6
Left kidney weight0.00.10.2-0.4-0.4-0.4-0.1
Right kidney weight0.00.10.30.30.30.30.6
Cocaine induced anxiety0.00.10.2-0.2-0.1-0.1-0.4
Post-drug Anxiety1.51.71.91.41.31.31.1
Baseline Anxiety2.02.32.41.61.51.51.5
Tail length0.51.92.71.31.31.31.6
Length with tail1.77.59.02.72.62.63.0
Length without tail0.72.12.61.41.41.41.6
Times rat made contact with spout2.42.82.9-1.7-1.7-1.7-1.6
Lifetime Intake0.80.91.0-1.0-0.9-0.9-1.0
Liver weight, left4.47.37.72.82.82.82.5
Liver weight, right9.817.117.44.24.24.24.0
Locomotor activity0.00.00.1-0.0-0.1-0.1-0.3
Locomotor testing distance0.71.21.6-1.0-1.0-1.0-1.3
Locomotor testing rearing0.30.61.1-0.7-0.7-0.7-1.1
Locomotion in novel chamber1.01.21.31.11.11.11.0
Locomotion in novel chamber post-restriction2.03.23.31.81.81.81.8
Fecal boli incidents, locomotor time 10.60.80.9-0.9-0.9-0.9-0.9
Change in fecal boli incidents, locomotor task4.14.14.22.02.02.01.9
Time >=10cm from walls, locomotor time 10.10.10.1-0.4-0.4-0.4-0.3
Bouts of movement, locomotor time 14.65.25.6-2.4-2.4-2.4-2.0
Total resting periods, locomotor time 14.65.25.6-2.4-2.4-2.4-1.9
Rest time, locomotor task time 10.00.10.20.10.10.10.4
Distance moved, locomotor task time 10.81.11.31.21.21.20.7
Vertical activity count, locomotor time 10.20.40.40.60.60.60.7
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.1-0.1-0.0
Bouts of movement, locomotor time 20.00.00.1-0.1-0.1-0.10.4
Total resting periods, locomotor time 20.10.10.1-0.3-0.3-0.30.1
Rest time, locomotor task time 21.82.32.4-1.6-1.6-1.6-1.4
Distance moved, locomotor task time 21.61.92.21.51.51.51.1
Vertical activity count, locomotor time 21.21.62.11.21.21.21.4
Light reinforcement 12.87.09.1-2.5-2.5-2.5-3.0
Light reinforcement 22.53.94.3-2.0-1.9-1.9-2.1
Bone: marrow area0.51.01.3-1.1-1.1-1.1-0.7
Bone: maximum diameter1.32.42.5-1.6-1.6-1.6-1.4
Bone: maximum force0.10.20.3-0.4-0.4-0.4-0.5
Bone: maximum moment0.20.30.4-0.5-0.5-0.5-0.6
Mean time between licks in bursts1.43.54.21.81.81.82.1
Mean num. licks in bursts0.10.10.1-0.3-0.3-0.3-0.3
Cd content in liver0.10.10.1-0.2-0.2-0.2-0.3
Co content in liver7.78.910.0-2.9-2.9-2.9-3.2
Cu content in liver0.20.20.2-0.4-0.4-0.4-0.5
Fe content in liver0.40.50.5-0.7-0.7-0.7-0.6
K content in liver0.30.30.4-0.6-0.6-0.6-0.0
Mg content in liver0.50.50.6-0.8-0.8-0.8-0.4
Mn content in liver0.00.00.0-0.2-0.2-0.2-0.0
Na content in liver0.20.20.3-0.5-0.5-0.5-0.1
Rb content in liver0.10.10.1-0.3-0.3-0.3-0.2
Se content in liver0.40.40.50.70.70.70.6
Sr content in liver0.10.10.30.20.20.20.5
Zn content in liver0.60.70.80.90.90.90.6
Bone: minimum diameter0.00.10.10.30.20.20.3
Time in familiar zone, hab. session 10.80.80.80.90.90.90.8
Time in novel zone, hab. session 10.70.70.80.90.90.90.6
Total zone transitions, hab. session 10.10.20.2-0.4-0.4-0.4-0.4
Total locomotion distance, hab. session 10.10.10.1-0.3-0.3-0.3-0.2
Locomotion velocity, hab. session 10.91.31.4-1.2-1.2-1.2-1.0
Time in familiar zone, hab. session 20.10.10.10.30.30.30.1
Time in novel zone, hab. session 20.20.20.30.40.40.40.5
Total zone transitions, hab. session 20.20.20.3-0.5-0.5-0.5-0.3
Total locomotion distance, hab. session 20.20.30.4-0.6-0.6-0.6-0.3
Locomotion velocity, hab. session 20.50.70.8-0.9-0.9-0.9-0.6
Novel to familiar place preference ratio0.20.30.40.50.50.50.6
Novelty place preference0.60.60.80.80.80.80.9
Time in novel zone, NPP test0.90.91.01.01.01.01.0
Total zone transitions, NPP test1.52.12.2-1.5-1.5-1.5-1.4
Total locomotion distance, NPP test1.82.52.8-1.7-1.7-1.7-1.3
Locomotion velocity, NPP test3.54.95.2-2.3-2.3-2.3-2.0
Intraocular pressure3.14.44.72.12.12.12.2
Delta distance traveled before/after self-admin2.72.93.21.81.81.81.4
Delta ambulatory time before/after self-admin0.40.50.60.80.70.70.5
Parametrial fat weight10.725.127.05.25.25.24.5
Pavlov. Cond. lever latency1.62.02.01.41.41.41.4
Pavlov. Cond. magazine entry latency0.00.10.1-0.3-0.3-0.3-0.2
Pavlov. Cond. change in total contacts0.00.00.0-0.1-0.1-0.1-0.0
Pavlov. Cond. index score0.60.70.8-0.9-0.9-0.9-0.8
Pavlov. Cond. latency score0.50.70.7-0.9-0.9-0.9-0.7
Pavlov. Cond. lever contacts1.01.21.3-1.1-1.1-1.1-1.0
Pavlov. Cond. magazine entry number0.30.40.40.70.70.70.5
Pavlov. Cond. intertrial magazine entries1.41.72.1-1.2-1.2-1.2-1.4
Pavlov. Cond. lever-magazine prob. diff.1.31.71.7-1.3-1.3-1.3-1.2
Pavlov. Cond. response bias1.11.31.4-1.2-1.2-1.2-1.0
Pavlov. Cond. lever latency1.41.92.01.41.41.41.2
Pavlov. Cond. magazine entry latency0.10.10.1-0.4-0.4-0.4-0.3
Pavlov. Cond. change in total contacts0.71.11.2-1.1-1.1-1.1-0.7
Pavlov. Cond. index score0.91.21.4-1.2-1.2-1.2-0.9
Pavlov. Cond. latency score0.81.11.2-1.1-1.1-1.1-0.8
Pavlov. Cond. lever contacts1.01.41.5-1.2-1.2-1.2-1.0
Pavlov. Cond. magazine entry number0.10.10.10.40.40.40.3
Pavlov. Cond. intertrial magazine entries2.53.74.02.02.02.01.8
Pavlov. Cond. lever-magazine prob. diff.0.50.70.8-0.9-0.9-0.9-0.6
Pavlov. Cond. response bias1.82.42.6-1.6-1.6-1.6-1.4
Time in closed arm before self-admin0.91.21.41.21.11.11.0
Time in closed arm after self-admin1.71.82.11.41.41.41.2
Time in open arm before self-admin0.30.30.5-0.7-0.6-0.6-0.3
Time in open arm after self-admin1.92.12.6-1.4-1.4-1.4-1.6
Bone: periosteal estimation0.91.92.1-1.4-1.4-1.4-1.1
Bone: periosteal perimeter0.40.70.8-0.9-0.9-0.9-0.7
Bone: post-yield work0.71.01.0-1.0-1.0-1.0-1.0
Progressive ratio test 1 active lever presses0.60.80.9-0.9-0.9-0.9-0.9
Progressive ratio test 1 breakpoint0.70.80.9-0.9-0.9-0.9-1.0
Progressive ratio test 1 inactive lever presses0.60.91.6-0.8-0.8-0.8-1.3
Progressive ratio test 2 active lever presses0.10.10.1-0.4-0.4-0.40.0
Progressive ratio test 2 breakpoint0.10.10.1-0.3-0.3-0.30.1
Progressive ratio test 2 inactive lever presses0.10.20.2-0.4-0.4-0.4-0.3
Incentive Sensitization - Responses0.20.20.3-0.6-0.5-0.50.0
Incentive Sensitization - Breakpoint0.10.10.1-0.4-0.4-0.40.2
Sum of active levers in priming session hrs 5-61.41.31.5-1.2-1.2-1.2-1.0
Progressive ratio1.11.81.81.31.41.41.3
Food seeking constrained by brief footshock1.51.92.2-1.3-1.3-1.3-1.5
Seeking ratio, punishment vs. effort1.42.12.1-1.4-1.4-1.4-1.4
Retroperitoneal fat weight22.194.397.09.89.89.89.3
Reaction time number correct0.61.21.5-1.2-1.2-1.2-0.8
Reaction time mean minus median0.00.00.1-0.1-0.1-0.1-0.3
Reaction time mean minus median AUC0.00.00.00.10.00.0-0.1
Reaction time num false alarms0.30.40.5-0.7-0.6-0.6-0.7
Reaction time num false alarms AUC0.50.80.9-0.9-0.8-0.8-0.9
Reaction time trials correct on left0.61.21.5-1.2-1.2-1.2-0.8
Reaction time trials on left0.71.31.6-1.2-1.2-1.2-0.8
Reaction time mean0.71.11.31.11.11.10.7
Reaction time mean AUC0.50.91.11.01.01.00.6
Median of all reaction times0.91.31.61.21.31.20.8
Reaction time omissions0.10.10.2-0.3-0.3-0.3-0.4
Reaction time false alarm rate0.00.00.1-0.2-0.1-0.1-0.4
Reaction time premature initiation rate0.10.10.10.40.30.30.4
Reaction time premature initiations0.10.10.2-0.3-0.4-0.4-0.1
Std. dev. reaction times0.20.30.40.60.60.60.4
Reaction time trials completed0.71.31.6-1.2-1.2-1.2-0.8
Reaction time trials AUC0.91.71.9-1.4-1.4-1.4-1.0
Run reversals in cocaine runway, females0.10.10.1-0.3-0.3-0.3-0.1
Run reversals in cocaine runway, males0.50.50.6-0.7-0.7-0.7-0.7
Latency to leave start box in cocaine runway0.20.30.3-0.5-0.5-0.5-0.5
Latency to leave start box in cocaine runway, F0.30.40.4-0.6-0.6-0.6-0.6
Latency to leave start box in cocaine runway, M0.20.10.20.40.40.40.3
Std. dev. time between licks in bursts0.00.10.10.30.30.30.2
Total sessions with >9 infusions0.00.00.10.20.20.2-0.1
Short access day 1 total inactive lever presses3.85.16.3-2.1-2.2-2.2-2.5
Short access day 10 total inactive lever presses1.02.42.7-1.5-1.5-1.5-1.6
Short access day 1 total infusions0.30.41.0-0.4-0.4-0.4-1.0
Short access day 10 total infusions1.21.61.7-1.2-1.2-1.2-1.3
Short access total infusions0.00.00.00.10.10.1-0.2
Short access day 1 locomotion0.70.91.3-0.9-0.9-0.9-1.1
Short access day 10 total locomotion1.22.22.3-1.5-1.5-1.5-1.5
Short access total locomotion0.00.00.00.10.20.20.0
One hour access (0.3 mA shock)0.30.30.4-0.6-0.6-0.6-0.4
Compulsive drug intake0.40.50.60.80.70.70.6
One hour access (shock baseline)1.01.61.8-1.3-1.3-1.3-1.0
Social response proportion0.91.01.21.11.01.00.8
Social responses0.20.20.30.50.50.50.1
Social time0.91.21.31.11.11.10.9
Soleus weight5.917.418.8-4.1-4.1-4.1-4.3
Bone: stiffness0.00.00.0-0.1-0.1-0.1-0.1
Tibialis anterior weight4.515.217.7-3.8-3.8-3.8-4.2
Time to tail flick, vehicle, before self-admin0.70.70.80.90.90.90.8
Time to tail flick, vehicle, after self-admin2.12.82.81.71.71.71.7
Time to tail flick, test, before self-admin0.00.00.1-0.1-0.1-0.1-0.4
Time to tail flick, test, after self-admin0.30.30.3-0.5-0.6-0.6-0.4
Delta time to tail flick, vehicle, before/after SA0.00.00.10.10.00.00.3
Delta time to tail flick, test, before/after SA1.91.92.2-1.5-1.5-1.5-1.0
Tibia length3.49.39.53.13.13.13.0
Ambulatory time before self-admin0.10.20.3-0.5-0.5-0.5-0.1
Ambulatory time after self-admin0.80.91.01.01.01.00.9
Bone: tissue strength0.50.50.60.70.80.80.5
Total heroin consumption3.84.54.6-2.1-2.2-2.2-2.0
Bone: trabecular number3.55.76.9-2.3-2.3-2.3-2.6
Bone: trabecular spacing1.92.52.51.61.61.61.6
Bone: trabecular thickness0.60.71.0-0.8-0.8-0.8-1.0
Bone: trabecular tissue density0.20.30.3-0.6-0.6-0.6-0.4
Water consumed over 24 hours0.40.60.6-0.8-0.8-0.8-0.6
Number of responses in last shaping day0.20.20.40.40.40.40.6