LOC120101717

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120101717 0.13 0.07 3.2e-08 0.06 0.06 0.06 0.06 3.2e-07 5.9e-07 6.0e-07 4.0e-07
2 Adipose mRNA stability LOC120101717 0.07 0.05 1.0e-04 0.03 0.03 0.02 0.03 3.0e-04 4.0e-04 3.7e-03 8.3e-04
3 Adipose gene expression LOC120101717 0.83 0.04 0.0e+00 0.39 0.48 0.48 0.48 1.1e-45 2.7e-60 4.0e-60 1.5e-60

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.52.64.20.5-2.1-1.8
Area under the delay curve0.30.30.70.80.10.5
BMI with tail6.120.955.4-7.42.60.7
BMI without tail5.516.740.0-6.32.81.6
Body weight6.327.677.1-8.82.0-1.2
Weight adjusted by age0.10.20.4-0.30.2-0.6
Bone surface0.30.61.00.1-1.0-0.8
Bone volume0.61.12.40.2-1.5-1.0
Breakpoint value in progressive ratio session0.30.40.8-0.40.90.5
Number of licking bursts0.61.01.70.2-1.3-1.2
Context. condit. distance diff. score0.20.30.40.6-0.60.3
Locomotion velocity, session 11.31.43.41.8-0.70.6
Locomotion distance, session 12.93.69.63.1-1.1-0.4
Locomotion velocity, session 21.21.34.02.0-0.10.2
Locomotion distance, session 23.04.210.33.2-1.01.2
Locomotion velocity, session 32.42.75.52.4-1.60.1
Locomotion distance, session 30.91.02.11.4-0.9-0.0
Stereotopy head waving bouts, day 30.50.51.3-0.3-0.5-1.1
Stereotopy head waving duration, day 30.10.10.4-0.60.2-0.0
Locomotion velocity, session 71.01.11.71.3-1.10.5
Locomotion distance, session 71.11.51.61.1-1.31.2
Stereotopy head waving bouts, day 70.40.40.6-0.80.70.3
Stereotopy head waving duration, day 70.10.10.20.00.0-0.4
Locomotion velocity, session 80.70.82.01.4-0.40.6
Locomotion distance, session 82.94.29.03.0-1.41.3
Degree of sensitization distance0.50.50.9-0.7-0.10.9
Degree of sensitization stereotypy0.70.81.4-0.61.20.7
Conditioned locomotion1.01.22.8-0.2-1.7-0.8
Cocaine response after cond. corrected0.81.01.71.3-1.00.5
Cocaine response after cond. not corrected1.31.62.51.6-1.4-0.2
Cocaine response before conditioning0.40.40.90.3-0.6-0.9
Saline control response0.10.10.3-0.20.40.5
Bone: connectivity density2.43.75.61.3-2.0-2.4
Bone: cortical apparent density0.10.10.20.4-0.1-0.4
Bone: cortical area1.01.52.1-0.7-1.4-1.4
Bone: cortical porosity0.80.81.8-0.4-0.8-1.3
Bone: cortical porosity0.60.70.9-0.7-0.8-0.9
Bone: cortical thickness2.43.97.7-0.4-2.0-2.8
Bone: cortical thickness3.74.48.21.3-1.8-2.9
Bone: cortical tissue density0.10.10.10.40.0-0.3
Condit. Reinf. active minus inactive responses0.20.20.5-0.70.2-0.5
Condit. Reinf. active-inactive response ratio0.10.10.3-0.60.0-0.1
Condit. Reinf. active responses0.30.41.1-0.31.00.1
Condit. Reinf. inactive responses0.70.92.00.11.40.9
Incentive salience index mean0.20.20.6-0.00.7-0.3
Condit. Reinf. lever presses0.91.23.40.11.90.5
Condit. Reinf. active minus inactive responses1.01.32.9-1.10.21.7
Condit. Reinf. active-inactive response ratio0.91.12.0-0.90.61.4
Condit. Reinf. active responses1.42.03.7-1.11.01.9
Condit. Reinf. inactive responses0.30.40.8-0.70.90.2
Condit. Reinf. lever presses2.94.05.0-1.62.12.2
Condit. Reinf. lever reinforcers received1.82.54.5-1.21.22.1
Conditioned reinforcement - actives0.61.12.11.4-1.1-0.1
Conditioned reinforcement - inactives0.30.40.60.6-0.6-0.8
Conditioned locomotion1.21.53.92.0-0.8-0.1
Patch foraging indifference point 0 sec0.20.30.60.50.7-0.0
Patch foraging indifference point AUC1.21.74.82.20.1-0.6
Delay disc. indifference point, 0s delay0.10.10.2-0.0-0.10.4
Delay disc. indifference point, 16s delay0.60.61.61.30.3-0.3
Delay disc. indifference point, 2s delay0.70.81.7-0.60.51.3
Delay disc. indifference point, 24s delay1.01.12.81.7-0.7-0.3
Delay disc. indifference point, 4s delay0.20.20.60.00.00.8
Delay disc. indifference point, 8s delay0.40.50.80.9-0.40.7
Indifference point function ln k0.30.51.2-1.1-0.4-0.3
Indifference point function log k0.30.51.2-1.1-0.4-0.3
Patch foraging total patch changes 0 sec0.30.60.91.00.90.2
Patch foraging total patch changes 12 sec0.60.81.90.41.40.6
Patch foraging total patch changes 18 sec1.01.52.81.70.61.1
Patch foraging total patch changes 24 sec0.61.11.71.31.00.8
Patch foraging total patch changes 6 sec0.71.02.60.61.60.3
Patch foraging time to switch 0 sec1.02.05.9-2.4-0.10.2
Patch foraging water rate 0 sec1.22.67.12.70.70.4
Patch foraging water rate 12 sec0.81.74.22.1-0.60.6
Patch foraging water rate 18 sec2.53.88.83.0-1.6-0.2
Patch foraging water rate 24 sec1.21.64.52.1-0.50.3
Patch foraging water rate 6 sec1.31.93.21.8-1.4-0.7
Seeking ratio, delayed vs. immediate footshock0.20.20.4-0.6-0.50.0
Distance traveled before self-admin1.41.82.2-1.21.51.3
Distance traveled after self-admin0.20.30.60.8-0.4-0.1
Extensor digitorum longus weight0.10.40.9-1.00.50.0
Bone: elastic displacement0.20.20.4-0.30.2-0.7
Bone: elastic work1.21.63.3-1.81.0-0.7
Bone: endosteal estimation1.12.54.5-2.10.71.6
Bone: endosteal perimeter0.61.22.7-0.90.31.6
Epididymis fat weight4.716.144.6-6.71.9-0.5
Delta time in closed arm before/after self-admin0.10.10.10.20.3-0.1
Delta time in open arm before/after self-admin0.80.81.8-1.30.4-0.6
Diff in mean of infusions in LGA sessions1.21.52.1-0.61.41.5
Delay discount exponential model param0.40.41.0-1.00.1-0.4
Extinction: sum of active levers before priming0.70.81.50.71.20.7
Active lever presses in extinction session 60.90.91.1-1.0-1.0-0.8
Bone: final force0.30.40.6-0.8-0.6-0.5
Bone: final moment0.30.60.6-0.7-0.8-0.8
Food consumed during 24 hour testing period1.62.23.7-0.2-1.7-1.9
Glucose0.71.22.8-1.70.7-0.3
Heart weight0.81.23.2-1.80.10.6
Delay discount hyperbolic model param0.20.20.4-0.60.1-0.4
Intermittent access intake day 1-15 change0.20.30.6-0.30.60.7
Intermittent access intake escalation0.10.30.7-0.30.30.9
Intermittent access intake escalation 20.70.81.3-1.10.70.8
Intermitt. access day 1 inactive lever presses0.51.73.8-1.91.10.2
Intermitt. access day 15 inactive lever presses0.51.02.5-1.6-0.3-0.7
Intermitt. access escalation Index0.20.30.4-0.7-0.2-0.6
Intermittent access day 1 total infusions0.30.41.0-0.5-1.0-0.1
Intermittent access day 15 total infusions0.50.71.3-0.9-1.10.0
Intermittent access terminal intake (last 3 days)0.40.61.5-1.2-0.5-0.2
Intermittent access total infusions0.50.60.8-0.9-0.8-0.5
Intermittent access day 1 locomotion0.60.71.70.3-1.30.6
Intermittent access day 15 total locomotion0.40.71.00.4-1.0-1.0
Intermittent access total locomotion0.60.71.21.1-1.00.2
Intermittent access standard deviation0.00.00.00.2-0.10.1
Left kidney weight0.83.710.9-3.30.2-0.5
Right kidney weight0.31.33.9-2.0-0.1-0.4
Cocaine induced anxiety0.40.61.50.0-0.51.2
Post-drug Anxiety1.31.42.5-1.60.51.2
Baseline Anxiety2.32.74.1-2.02.0-0.4
Tail length0.31.32.6-1.1-0.4-1.6
Length with tail1.25.111.0-3.30.0-2.1
Length without tail1.54.79.3-3.1-0.7-2.1
Times rat made contact with spout0.60.71.5-0.71.20.1
Lifetime Intake0.30.40.6-0.5-0.8-0.5
Liver weight, left1.52.54.4-2.11.31.1
Liver weight, right1.11.95.1-2.30.6-0.6
Locomotor activity1.42.13.1-0.71.61.8
Locomotor testing distance0.20.41.00.40.41.0
Locomotor testing rearing0.00.10.20.40.20.1
Locomotion in novel chamber0.40.61.11.0-0.6-0.4
Locomotion in novel chamber post-restriction1.72.75.71.3-0.8-2.4
Fecal boli incidents, locomotor time 10.60.81.21.1-0.31.1
Change in fecal boli incidents, locomotor task1.51.43.6-0.3-0.8-1.9
Time >=10cm from walls, locomotor time 10.00.00.1-0.3-0.2-0.2
Bouts of movement, locomotor time 10.30.30.60.5-0.80.4
Total resting periods, locomotor time 10.30.40.60.8-0.60.3
Rest time, locomotor task time 10.10.20.50.10.70.1
Distance moved, locomotor task time 10.50.70.90.9-0.9-0.7
Vertical activity count, locomotor time 10.20.40.8-0.5-0.5-0.9
Time >=10cm from walls, locomotor time 21.42.04.6-2.10.4-1.2
Bouts of movement, locomotor time 21.32.14.2-0.31.42.0
Total resting periods, locomotor time 21.52.64.8-0.71.62.2
Rest time, locomotor task time 20.81.11.70.01.21.3
Distance moved, locomotor task time 21.62.02.51.1-1.4-1.6
Vertical activity count, locomotor time 20.30.40.80.3-0.9-0.7
Light reinforcement 10.30.81.21.1-0.7-0.9
Light reinforcement 20.50.81.10.9-0.7-1.1
Bone: marrow area1.12.44.2-2.10.61.6
Bone: maximum diameter0.10.20.4-0.6-0.5-0.1
Bone: maximum force0.30.50.9-1.0-0.7-0.4
Bone: maximum moment0.40.70.8-0.9-0.8-0.7
Mean time between licks in bursts1.74.37.60.4-2.3-2.8
Mean num. licks in bursts0.61.02.1-0.51.40.8
Cd content in liver0.30.40.5-0.7-0.5-0.6
Co content in liver2.42.74.10.6-2.0-2.0
Cu content in liver0.40.40.90.60.2-1.0
Fe content in liver1.21.54.0-2.00.6-0.2
K content in liver1.11.11.61.21.30.1
Mg content in liver0.20.20.4-0.30.6-0.2
Mn content in liver0.70.81.51.2-0.21.0
Na content in liver1.01.01.20.81.1-1.1
Rb content in liver1.01.21.7-1.01.3-1.0
Se content in liver1.61.94.0-1.30.2-2.0
Sr content in liver0.90.82.11.4-0.4-0.2
Zn content in liver1.01.12.1-0.2-1.1-1.5
Bone: minimum diameter0.40.81.7-1.3-0.80.2
Time in familiar zone, hab. session 10.80.72.1-0.00.3-1.5
Time in novel zone, hab. session 11.51.53.6-0.70.71.9
Total zone transitions, hab. session 11.52.22.61.6-1.2-1.6
Total locomotion distance, hab. session 10.70.92.41.6-0.5-0.3
Locomotion velocity, hab. session 11.31.94.12.0-0.9-0.9
Time in familiar zone, hab. session 20.20.20.60.8-0.40.0
Time in novel zone, hab. session 20.70.81.5-1.20.70.6
Total zone transitions, hab. session 20.20.20.30.5-0.50.4
Total locomotion distance, hab. session 20.91.22.01.40.11.3
Locomotion velocity, hab. session 21.01.43.51.9-0.30.8
Novel to familiar place preference ratio0.30.30.6-0.60.00.8
Novelty place preference0.20.20.4-0.6-0.10.4
Time in novel zone, NPP test0.30.40.7-0.80.20.6
Total zone transitions, NPP test0.60.92.21.5-0.50.5
Total locomotion distance, NPP test1.82.55.02.2-0.21.6
Locomotion velocity, NPP test2.02.96.62.6-0.71.3
Intraocular pressure0.50.71.60.7-1.3-0.2
Delta distance traveled before/after self-admin3.13.34.92.2-1.9-1.2
Delta ambulatory time before/after self-admin2.53.04.22.1-2.0-0.9
Parametrial fat weight10.925.661.8-7.93.90.2
Pavlov. Cond. lever latency0.40.51.4-1.2-0.40.1
Pavlov. Cond. magazine entry latency0.30.40.7-0.90.8-0.2
Pavlov. Cond. change in total contacts0.30.30.70.30.9-0.0
Pavlov. Cond. index score0.10.10.20.10.5-0.4
Pavlov. Cond. latency score0.20.20.40.60.2-0.5
Pavlov. Cond. lever contacts0.20.30.60.50.80.2
Pavlov. Cond. magazine entry number0.50.71.00.9-1.0-0.3
Pavlov. Cond. intertrial magazine entries0.40.51.01.0-0.10.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.00.8-0.1
Pavlov. Cond. response bias0.30.30.6-0.70.80.0
Pavlov. Cond. lever latency2.33.15.32.3-1.7-1.1
Pavlov. Cond. magazine entry latency0.70.81.3-1.20.80.6
Pavlov. Cond. change in total contacts2.64.26.6-2.62.01.5
Pavlov. Cond. index score2.12.85.0-2.21.60.9
Pavlov. Cond. latency score1.52.03.7-1.91.40.7
Pavlov. Cond. lever contacts2.43.25.5-2.31.81.0
Pavlov. Cond. magazine entry number1.01.22.41.6-1.0-0.6
Pavlov. Cond. intertrial magazine entries0.20.30.50.7-0.30.7
Pavlov. Cond. lever-magazine prob. diff.2.33.15.8-2.41.70.8
Pavlov. Cond. response bias2.43.35.8-2.41.61.2
Time in closed arm before self-admin0.50.61.3-0.0-1.1-0.7
Time in closed arm after self-admin0.91.01.21.0-1.1-1.0
Time in open arm before self-admin0.20.20.4-0.3-0.70.3
Time in open arm after self-admin0.70.71.5-1.20.8-0.3
Bone: periosteal estimation0.51.13.0-1.7-0.50.4
Bone: periosteal perimeter0.20.30.5-0.6-0.50.7
Bone: post-yield work0.50.81.5-0.9-1.20.1
Progressive ratio test 1 active lever presses0.50.61.9-0.11.40.2
Progressive ratio test 1 breakpoint0.50.61.8-0.11.30.2
Progressive ratio test 1 inactive lever presses0.91.32.1-0.31.31.5
Progressive ratio test 2 active lever presses0.50.61.8-0.21.30.3
Progressive ratio test 2 breakpoint0.40.51.4-0.21.20.2
Progressive ratio test 2 inactive lever presses0.30.51.2-0.71.10.0
Incentive Sensitization - Responses0.10.20.40.10.6-0.4
Incentive Sensitization - Breakpoint0.10.20.40.20.7-0.4
Sum of active levers in priming session hrs 5-60.10.10.20.50.0-0.0
Progressive ratio1.01.62.01.3-1.0-1.4
Food seeking constrained by brief footshock2.63.27.82.8-1.3-0.1
Seeking ratio, punishment vs. effort0.30.41.20.00.21.1
Retroperitoneal fat weight13.055.5137.8-11.75.30.4
Reaction time number correct0.20.40.80.50.20.9
Reaction time mean minus median0.82.13.7-1.61.9-0.1
Reaction time mean minus median AUC0.71.83.1-1.11.8-1.0
Reaction time num false alarms2.23.05.71.5-2.4-1.1
Reaction time num false alarms AUC1.32.13.11.5-1.7-0.9
Reaction time trials correct on left0.20.40.80.50.20.9
Reaction time trials on left0.20.40.80.50.30.9
Reaction time mean1.92.94.2-2.02.10.7
Reaction time mean AUC1.52.43.5-1.91.90.5
Median of all reaction times1.62.33.1-1.81.80.8
Reaction time omissions0.91.33.3-0.71.8-0.4
Reaction time false alarm rate1.42.02.91.2-1.7-1.2
Reaction time premature initiation rate0.60.81.20.3-1.1-1.0
Reaction time premature initiations0.30.50.60.7-0.7-0.6
Std. dev. reaction times1.52.84.6-1.92.20.4
Reaction time trials completed0.20.40.80.50.30.9
Reaction time trials AUC0.20.51.20.40.31.1
Run reversals in cocaine runway, females0.10.10.3-0.50.1-0.2
Run reversals in cocaine runway, males1.51.52.5-1.10.91.6
Latency to leave start box in cocaine runway0.60.71.0-0.8-1.0-0.7
Latency to leave start box in cocaine runway, F1.41.62.3-1.5-1.3-0.8
Latency to leave start box in cocaine runway, M0.20.20.60.8-0.2-0.1
Std. dev. time between licks in bursts1.52.13.21.1-1.3-1.8
Total sessions with >9 infusions0.10.10.20.50.1-0.2
Short access day 1 total inactive lever presses0.40.61.2-0.5-1.1-0.4
Short access day 10 total inactive lever presses0.71.64.5-2.1-0.10.5
Short access day 1 total infusions1.11.42.41.6-1.2-0.7
Short access day 10 total infusions0.20.30.80.00.10.9
Short access total infusions0.10.20.40.1-0.6-0.4
Short access day 1 locomotion0.30.40.80.90.60.2
Short access day 10 total locomotion0.81.52.41.60.41.4
Short access total locomotion1.01.21.81.30.11.3
One hour access (0.3 mA shock)0.30.30.90.90.10.2
Compulsive drug intake0.70.82.51.6-0.2-0.1
One hour access (shock baseline)0.20.30.4-0.4-0.6-0.6
Social response proportion3.03.46.2-2.51.61.1
Social responses0.50.71.20.11.10.9
Social time0.40.50.8-0.80.90.3
Soleus weight0.10.20.3-0.5-0.2-0.5
Bone: stiffness0.30.51.2-0.4-1.1-0.3
Tibialis anterior weight0.62.25.4-2.31.1-0.0
Time to tail flick, vehicle, before self-admin1.92.05.3-2.3-0.2-0.8
Time to tail flick, vehicle, after self-admin0.20.30.9-1.00.20.1
Time to tail flick, test, before self-admin0.30.30.40.3-0.6-0.6
Time to tail flick, test, after self-admin0.40.41.10.2-1.0-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.80.90.40.5
Delta time to tail flick, test, before/after SA0.30.30.7-0.2-0.10.9
Tibia length2.15.99.5-3.1-1.9-2.2
Ambulatory time before self-admin1.01.52.2-1.31.50.9
Ambulatory time after self-admin0.50.61.21.1-0.7-0.0
Bone: tissue strength0.30.30.4-0.60.40.6
Total heroin consumption0.30.41.0-0.31.00.1
Bone: trabecular number2.03.34.90.6-2.2-2.1
Bone: trabecular spacing2.33.13.7-1.41.91.9
Bone: trabecular thickness3.34.110.60.5-1.2-3.3
Bone: trabecular tissue density0.10.10.2-0.50.1-0.1
Water consumed over 24 hours0.00.10.10.3-0.30.1
Number of responses in last shaping day0.60.71.81.4-0.5-0.2