LOC120101717

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120101717 0.05 0.03 1.5e-03 0 0.01 0.01 0.01 9.3e-02 1.9e-02 2.6e-02 6.4e-02
2 Adipose mRNA stability LOC120101717 0.05 0.04 3.1e-04 0 0.01 0.01 0.01 2.4e-01 9.9e-03 2.3e-02 4.7e-02
3 Adipose gene expression LOC120101717 0.8 0.05 0.0e+00 0.33 0.46 0.47 0.47 4.7e-38 2.3e-57 3.7e-58 5.3e-58

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.21.9-0.6-1.41.2
Area under the delay curve0.10.10.10.30.3-0.2
BMI with tail7.424.043.9-6.65.3-0.5
BMI without tail6.613.519.0-4.34.4-1.8
Body weight7.933.266.5-8.25.61.5
Weight adjusted by age0.30.30.6-0.40.40.8
Bone surface0.30.40.9-0.9-0.20.7
Bone volume0.40.70.9-0.9-0.90.7
Breakpoint value in progressive ratio session0.91.02.0-0.81.4-0.7
Number of licking bursts0.50.61.2-0.2-0.71.1
Context. condit. distance diff. score0.40.51.01.0-0.6-0.4
Locomotion velocity, session 11.21.32.61.6-0.9-0.7
Locomotion distance, session 12.93.77.22.7-2.00.1
Locomotion velocity, session 21.61.94.02.0-1.2-0.3
Locomotion distance, session 23.65.19.13.0-2.0-1.5
Locomotion velocity, session 33.33.85.72.4-2.4-0.2
Locomotion distance, session 31.41.52.31.5-1.50.1
Stereotopy head waving bouts, day 30.40.41.2-1.1-0.10.3
Stereotopy head waving duration, day 30.20.30.4-0.60.3-0.6
Locomotion velocity, session 71.71.93.31.4-1.8-0.5
Locomotion distance, session 71.82.33.51.2-1.9-1.4
Stereotopy head waving bouts, day 70.70.71.6-0.30.7-1.3
Stereotopy head waving duration, day 70.10.10.2-0.4-0.0-0.0
Locomotion velocity, session 81.21.42.81.7-0.7-0.9
Locomotion distance, session 84.66.711.73.4-2.4-1.7
Degree of sensitization distance0.70.71.8-0.60.1-1.3
Degree of sensitization stereotypy0.40.50.7-0.20.9-0.8
Conditioned locomotion0.60.71.6-0.6-1.3-0.3
Cocaine response after cond. corrected1.82.03.41.4-1.8-0.8
Cocaine response after cond. not corrected2.12.35.51.1-2.4-0.3
Cocaine response before conditioning0.40.50.6-0.7-0.50.8
Saline control response0.40.50.8-0.90.4-0.7
Bone: connectivity density1.11.83.2-0.3-1.41.8
Bone: cortical apparent density0.10.10.30.2-0.20.6
Bone: cortical area1.01.52.5-1.6-0.41.3
Bone: cortical porosity0.80.92.3-1.50.30.5
Bone: cortical porosity1.01.02.9-1.70.30.3
Bone: cortical thickness2.33.76.3-2.0-1.02.5
Bone: cortical thickness2.52.86.80.1-1.32.6
Bone: cortical tissue density0.10.10.20.3-0.20.5
Condit. Reinf. active minus inactive responses0.20.20.6-0.8-0.10.1
Condit. Reinf. active-inactive response ratio0.10.10.3-0.6-0.2-0.0
Condit. Reinf. active responses0.00.00.00.10.2-0.2
Condit. Reinf. inactive responses0.50.60.80.70.6-0.9
Incentive salience index mean0.00.00.10.1-0.00.2
Condit. Reinf. lever presses0.30.50.70.80.80.1
Condit. Reinf. active minus inactive responses1.51.95.1-0.70.2-2.3
Condit. Reinf. active-inactive response ratio1.01.12.4-0.60.7-1.6
Condit. Reinf. active responses1.31.85.0-0.30.7-2.2
Condit. Reinf. inactive responses0.10.20.4-0.20.6-0.2
Condit. Reinf. lever presses2.63.55.1-1.02.3-2.1
Condit. Reinf. lever reinforcers received1.72.46.1-0.51.0-2.5
Conditioned reinforcement - actives0.30.30.60.7-0.80.1
Conditioned reinforcement - inactives0.70.81.10.9-1.10.5
Conditioned locomotion1.31.52.41.4-1.60.4
Patch foraging indifference point 0 sec0.20.20.70.8-0.3-0.1
Patch foraging indifference point AUC2.12.44.82.2-0.71.4
Delay disc. indifference point, 0s delay0.40.40.9-0.50.90.1
Delay disc. indifference point, 16s delay0.30.30.70.8-0.40.3
Delay disc. indifference point, 2s delay0.70.81.4-0.51.2-0.9
Delay disc. indifference point, 24s delay1.11.11.91.2-1.40.3
Delay disc. indifference point, 4s delay0.10.10.4-0.10.7-0.1
Delay disc. indifference point, 8s delay0.40.40.70.9-0.2-0.6
Indifference point function ln k0.50.81.6-1.30.2-0.8
Indifference point function log k0.50.81.6-1.30.2-0.8
Patch foraging total patch changes 0 sec0.40.61.61.3-0.4-0.2
Patch foraging total patch changes 12 sec0.20.20.30.60.50.0
Patch foraging total patch changes 18 sec1.92.56.12.5-1.0-0.6
Patch foraging total patch changes 24 sec0.81.02.91.7-0.4-0.3
Patch foraging total patch changes 6 sec0.40.61.71.30.00.2
Patch foraging time to switch 0 sec1.72.65.4-2.31.3-0.8
Patch foraging water rate 0 sec2.33.79.43.1-1.30.3
Patch foraging water rate 12 sec2.33.65.72.4-2.1-0.8
Patch foraging water rate 18 sec4.56.010.52.7-3.2-0.5
Patch foraging water rate 24 sec3.44.77.52.7-2.5-0.7
Patch foraging water rate 6 sec2.02.96.21.5-2.50.6
Seeking ratio, delayed vs. immediate footshock0.50.51.4-1.20.40.0
Distance traveled before self-admin1.01.03.00.11.7-0.2
Distance traveled after self-admin0.70.71.31.1-0.60.7
Extensor digitorum longus weight0.31.12.3-0.91.50.2
Bone: elastic displacement0.40.51.2-0.60.01.1
Bone: elastic work2.12.74.8-2.21.60.8
Bone: endosteal estimation1.53.34.3-1.72.1-1.6
Bone: endosteal perimeter0.61.22.6-0.60.7-1.6
Epididymis fat weight6.615.329.0-5.44.01.0
Delta time in closed arm before/after self-admin0.50.41.31.1-0.20.0
Delta time in open arm before/after self-admin0.70.72.1-1.40.20.1
Diff in mean of infusions in LGA sessions0.60.71.10.60.8-1.1
Delay discount exponential model param0.10.10.2-0.4-0.1-0.0
Extinction: sum of active levers before priming0.30.30.5-0.40.7-0.4
Active lever presses in extinction session 60.70.71.9-1.40.40.3
Bone: final force0.40.71.6-1.30.10.7
Bone: final moment0.50.81.7-1.30.10.9
Food consumed during 24 hour testing period1.01.22.5-1.6-0.50.9
Glucose1.32.02.8-1.71.51.0
Heart weight1.82.54.9-2.21.3-1.0
Delay discount hyperbolic model param0.10.10.1-0.3-0.30.2
Intermittent access intake day 1-15 change1.00.91.8-0.61.3-0.9
Intermittent access intake escalation0.80.81.5-0.51.2-0.8
Intermittent access intake escalation 22.82.74.0-1.72.0-1.2
Intermitt. access day 1 inactive lever presses0.80.91.5-0.91.20.7
Intermitt. access day 15 inactive lever presses1.11.22.9-1.70.90.0
Intermitt. access escalation Index0.90.81.5-1.20.00.9
Intermittent access day 1 total infusions0.30.40.7-0.6-0.80.4
Intermittent access day 15 total infusions0.20.20.7-0.8-0.00.0
Intermittent access terminal intake (last 3 days)0.50.51.4-1.20.30.0
Intermittent access total infusions0.40.41.0-1.0-0.30.3
Intermittent access day 1 locomotion0.20.20.6-0.2-0.80.3
Intermittent access day 15 total locomotion0.80.81.1-0.8-0.91.0
Intermittent access total locomotion0.60.71.60.3-1.30.5
Intermittent access standard deviation0.40.40.90.11.0-0.6
Left kidney weight1.13.27.3-2.71.5-0.3
Right kidney weight0.92.66.9-2.61.0-0.0
Cocaine induced anxiety0.91.01.81.4-0.1-1.1
Post-drug Anxiety0.91.01.70.41.3-1.1
Baseline Anxiety2.32.54.4-2.11.60.7
Tail length0.31.01.9-1.40.31.1
Length with tail1.76.211.1-3.31.32.4
Length without tail2.35.18.0-2.81.02.5
Times rat made contact with spout0.91.12.5-0.91.6-0.1
Lifetime Intake0.10.20.3-0.4-0.60.2
Liver weight, left0.61.02.1-0.9-0.11.5
Liver weight, right1.11.83.4-1.40.01.9
Locomotor activity1.01.63.0-0.01.7-1.4
Locomotor testing distance0.20.40.80.90.4-0.5
Locomotor testing rearing0.20.30.50.30.60.7
Locomotion in novel chamber0.40.51.40.1-1.20.0
Locomotion in novel chamber post-restriction1.72.14.10.8-1.22.0
Fecal boli incidents, locomotor time 11.01.01.91.4-0.6-1.0
Change in fecal boli incidents, locomotor task1.01.02.2-0.7-0.41.5
Time >=10cm from walls, locomotor time 10.10.10.2-0.2-0.3-0.5
Bouts of movement, locomotor time 10.40.50.80.7-0.9-0.3
Total resting periods, locomotor time 10.60.70.90.9-1.0-0.4
Rest time, locomotor task time 10.20.20.40.5-0.3-0.6
Distance moved, locomotor task time 10.60.60.80.6-0.90.9
Vertical activity count, locomotor time 10.50.61.1-1.00.40.7
Time >=10cm from walls, locomotor time 22.82.95.9-2.41.60.6
Bouts of movement, locomotor time 21.31.43.20.51.0-1.8
Total resting periods, locomotor time 21.71.83.70.41.2-1.9
Rest time, locomotor task time 20.60.61.10.80.4-1.0
Distance moved, locomotor task time 21.11.32.50.0-1.11.6
Vertical activity count, locomotor time 20.20.20.4-0.6-0.30.2
Light reinforcement 10.20.40.80.5-0.50.9
Light reinforcement 20.40.51.40.3-0.11.2
Bone: marrow area1.53.24.1-1.72.0-1.6
Bone: maximum diameter0.20.30.8-0.90.20.1
Bone: maximum force0.40.71.9-1.40.10.3
Bone: maximum moment0.50.92.3-1.50.10.6
Mean time between licks in bursts1.72.43.7-0.6-1.91.8
Mean num. licks in bursts0.70.81.6-0.51.3-0.7
Cd content in liver0.80.92.2-1.5-0.20.6
Co content in liver2.42.86.0-0.0-1.62.4
Cu content in liver0.10.10.20.3-0.40.3
Fe content in liver0.91.12.9-1.70.6-0.4
K content in liver1.31.23.31.80.30.6
Mg content in liver0.20.20.30.60.50.3
Mn content in liver1.82.03.41.8-1.6-0.0
Na content in liver0.60.71.20.20.91.1
Rb content in liver0.30.30.6-0.30.80.6
Se content in liver2.22.76.4-1.20.62.5
Sr content in liver0.70.71.00.9-1.0-0.3
Zn content in liver0.80.91.4-0.9-0.61.2
Bone: minimum diameter0.40.72.0-1.40.3-0.4
Time in familiar zone, hab. session 11.31.23.0-0.80.21.7
Time in novel zone, hab. session 11.61.54.00.30.7-2.0
Total zone transitions, hab. session 10.81.21.50.9-1.11.2
Total locomotion distance, hab. session 10.81.12.11.4-1.0-0.4
Locomotion velocity, hab. session 11.31.82.91.7-1.60.2
Time in familiar zone, hab. session 20.00.00.00.10.00.0
Time in novel zone, hab. session 20.30.30.4-0.60.7-0.4
Total zone transitions, hab. session 20.20.20.50.3-0.2-0.7
Total locomotion distance, hab. session 21.11.52.31.4-0.4-1.5
Locomotion velocity, hab. session 21.31.73.21.8-0.9-1.0
Novel to familiar place preference ratio0.30.30.80.0-0.2-0.9
Novelty place preference0.10.10.3-0.2-0.3-0.5
Time in novel zone, NPP test0.10.10.2-0.50.1-0.3
Total zone transitions, NPP test0.50.81.91.4-0.6-0.2
Total locomotion distance, NPP test2.33.25.82.4-1.0-1.6
Locomotion velocity, NPP test2.73.87.12.7-1.6-1.3
Intraocular pressure0.81.02.70.6-1.6-0.4
Delta distance traveled before/after self-admin1.41.52.81.0-1.70.9
Delta ambulatory time before/after self-admin1.51.63.31.1-1.80.6
Parametrial fat weight10.821.133.8-5.85.4-0.6
Pavlov. Cond. lever latency1.01.31.9-1.40.3-1.3
Pavlov. Cond. magazine entry latency0.60.81.7-0.61.30.6
Pavlov. Cond. change in total contacts0.40.41.01.0-0.00.5
Pavlov. Cond. index score0.40.51.20.30.51.1
Pavlov. Cond. latency score0.60.71.50.8-0.01.2
Pavlov. Cond. lever contacts0.40.51.11.00.30.4
Pavlov. Cond. magazine entry number0.70.91.80.8-1.3-0.5
Pavlov. Cond. intertrial magazine entries1.82.22.91.2-1.5-1.7
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.20.70.8
Pavlov. Cond. response bias0.40.51.2-0.31.10.3
Pavlov. Cond. lever latency2.94.05.12.0-2.31.6
Pavlov. Cond. magazine entry latency0.81.01.7-1.31.1-0.2
Pavlov. Cond. change in total contacts3.64.96.8-2.22.6-1.8
Pavlov. Cond. index score2.73.54.8-2.22.2-1.0
Pavlov. Cond. latency score1.92.33.2-1.81.8-0.8
Pavlov. Cond. lever contacts2.83.85.5-1.92.4-1.5
Pavlov. Cond. magazine entry number1.41.72.81.7-1.50.4
Pavlov. Cond. intertrial magazine entries0.50.70.80.9-0.7-0.9
Pavlov. Cond. lever-magazine prob. diff.3.14.05.9-2.32.4-0.8
Pavlov. Cond. response bias2.63.54.4-1.92.1-1.5
Time in closed arm before self-admin0.40.40.80.2-0.90.7
Time in closed arm after self-admin2.02.03.21.5-1.80.8
Time in open arm before self-admin0.60.61.4-0.61.20.3
Time in open arm after self-admin1.41.62.4-1.61.50.0
Bone: periosteal estimation0.81.73.7-1.91.0-0.6
Bone: periosteal perimeter0.30.50.9-0.9-0.2-0.7
Bone: post-yield work1.01.42.9-1.70.4-1.1
Progressive ratio test 1 active lever presses0.10.10.10.4-0.2-0.3
Progressive ratio test 1 breakpoint0.10.10.20.4-0.1-0.4
Progressive ratio test 1 inactive lever presses0.20.20.30.50.4-0.4
Progressive ratio test 2 active lever presses0.00.00.1-0.10.1-0.3
Progressive ratio test 2 breakpoint0.10.10.1-0.10.3-0.3
Progressive ratio test 2 inactive lever presses0.50.60.9-1.00.8-0.4
Incentive Sensitization - Responses0.10.10.2-0.40.10.4
Incentive Sensitization - Breakpoint0.10.10.1-0.30.10.4
Sum of active levers in priming session hrs 5-60.40.40.80.9-0.60.1
Progressive ratio0.70.91.41.0-1.20.3
Food seeking constrained by brief footshock2.83.56.72.6-1.80.9
Seeking ratio, punishment vs. effort0.10.20.40.20.7-0.1
Retroperitoneal fat weight11.036.163.6-8.06.70.3
Reaction time number correct0.40.61.01.0-0.5-0.7
Reaction time mean minus median1.52.03.5-1.51.9-0.3
Reaction time mean minus median AUC1.31.72.4-1.31.50.9
Reaction time num false alarms1.72.36.40.6-2.50.4
Reaction time num false alarms AUC1.31.74.30.8-2.10.4
Reaction time trials correct on left0.40.61.01.0-0.5-0.7
Reaction time trials on left0.40.61.11.0-0.5-0.7
Reaction time mean2.73.77.0-1.92.7-0.8
Reaction time mean AUC2.43.25.8-1.92.4-0.6
Median of all reaction times2.33.16.1-1.62.5-0.8
Reaction time omissions0.81.11.8-0.31.21.3
Reaction time false alarm rate0.91.33.20.4-1.80.8
Reaction time premature initiation rate0.30.40.60.0-0.80.6
Reaction time premature initiations0.30.50.90.7-1.00.2
Std. dev. reaction times1.92.75.0-1.62.2-0.7
Reaction time trials completed0.40.61.11.0-0.5-0.7
Reaction time trials AUC0.40.60.90.9-0.4-1.0
Run reversals in cocaine runway, females0.80.81.7-1.30.80.2
Run reversals in cocaine runway, males0.90.81.7-0.30.9-1.3
Latency to leave start box in cocaine runway0.80.92.4-1.6-0.2-0.5
Latency to leave start box in cocaine runway, F1.71.95.6-2.40.1-0.4
Latency to leave start box in cocaine runway, M0.20.20.30.6-0.3-0.3
Std. dev. time between licks in bursts1.61.93.40.6-1.81.4
Total sessions with >9 infusions0.10.10.20.2-0.5-0.1
Short access day 1 total inactive lever presses0.50.50.8-0.3-0.80.9
Short access day 10 total inactive lever presses1.21.42.5-1.31.60.0
Short access day 1 total infusions0.50.50.80.8-0.90.2
Short access day 10 total infusions0.30.30.60.8-0.5-0.3
Short access total infusions0.10.10.20.2-0.4-0.0
Short access day 1 locomotion0.40.51.31.1-0.3-0.2
Short access day 10 total locomotion0.80.92.31.5-0.1-0.7
Short access total locomotion0.90.92.21.5-0.2-0.7
One hour access (0.3 mA shock)0.40.51.01.0-0.5-0.5
Compulsive drug intake0.80.81.31.2-0.90.7
One hour access (shock baseline)0.20.20.5-0.70.2-0.4
Social response proportion4.24.67.2-2.52.7-0.6
Social responses0.20.20.40.00.5-0.7
Social time0.91.11.8-1.31.3-0.1
Soleus weight0.10.40.7-0.80.50.6
Bone: stiffness0.20.30.5-0.7-0.70.1
Tibialis anterior weight1.44.67.3-2.52.70.3
Time to tail flick, vehicle, before self-admin3.94.08.2-2.91.80.8
Time to tail flick, vehicle, after self-admin0.00.00.10.10.3-0.1
Time to tail flick, test, before self-admin0.10.10.2-0.4-0.0-0.1
Time to tail flick, test, after self-admin0.10.10.2-0.5-0.5-0.0
Delta time to tail flick, vehicle, before/after SA2.12.14.32.1-1.3-0.5
Delta time to tail flick, test, before/after SA0.10.10.10.20.0-0.3
Tibia length2.67.519.4-4.41.01.4
Ambulatory time before self-admin0.80.82.3-0.11.50.2
Ambulatory time after self-admin1.21.32.41.5-1.10.6
Bone: tissue strength0.50.50.9-0.90.5-0.7
Total heroin consumption0.00.00.1-0.00.20.2
Bone: trabecular number1.11.72.7-0.4-1.51.7
Bone: trabecular spacing1.11.42.1-0.31.4-1.5
Bone: trabecular thickness3.33.910.3-1.1-0.43.2
Bone: trabecular tissue density0.20.30.7-0.90.50.1
Water consumed over 24 hours0.10.10.3-0.5-0.10.2
Number of responses in last shaping day0.50.50.80.6-0.9-0.5