LOC120101717

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120101717 0.13 0.07 3.2e-08 0.06 0.06 0.06 0.06 3.2e-07 5.9e-07 6.0e-07 3.9e-07
2 Adipose mRNA stability LOC120101717 0.07 0.05 1.0e-04 0.03 0.03 0.02 0.03 3.0e-04 4.0e-04 3.7e-03 7.6e-04
3 Adipose gene expression LOC120101717 0.83 0.04 0.0e+00 0.39 0.48 0.48 0.48 1.1e-45 2.7e-60 4.0e-60 1.6e-60

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.42.64.2-0.52.1-1.8
Area under the delay curve0.20.30.7-0.8-0.10.5
BMI with tail6.020.955.47.4-2.60.7
BMI without tail3.116.740.06.3-2.81.6
Body weight6.327.677.18.8-2.0-1.2
Weight adjusted by age0.10.20.40.3-0.2-0.6
Bone surface0.30.61.0-0.11.0-0.8
Bone volume0.61.12.4-0.21.5-1.0
Breakpoint value in progressive ratio session0.20.40.80.4-0.90.4
Number of licking bursts0.31.01.7-0.21.3-1.2
Context. condit. distance diff. score0.20.30.4-0.60.60.3
Locomotion velocity, session 11.31.43.4-1.80.70.6
Locomotion distance, session 12.83.69.6-3.11.1-0.4
Locomotion velocity, session 21.11.34.0-2.00.10.2
Locomotion distance, session 23.04.210.3-3.21.01.2
Locomotion velocity, session 32.32.75.5-2.41.60.1
Locomotion distance, session 30.91.02.1-1.40.9-0.0
Stereotopy head waving bouts, day 30.50.51.30.30.5-1.1
Stereotopy head waving duration, day 30.10.10.40.6-0.2-0.0
Locomotion velocity, session 71.01.11.7-1.31.10.5
Locomotion distance, session 71.11.51.6-1.11.31.2
Stereotopy head waving bouts, day 70.40.40.60.8-0.70.3
Stereotopy head waving duration, day 70.10.10.2-0.0-0.0-0.4
Locomotion velocity, session 80.70.82.0-1.40.40.6
Locomotion distance, session 82.94.29.0-3.01.41.3
Degree of sensitization distance0.40.50.90.70.10.9
Degree of sensitization stereotypy0.70.81.40.6-1.20.7
Conditioned locomotion1.01.22.80.21.7-0.8
Cocaine response after cond. corrected0.61.01.7-1.31.00.5
Cocaine response after cond. not corrected1.11.62.5-1.61.4-0.2
Cocaine response before conditioning0.40.40.9-0.30.6-0.9
Saline control response0.10.10.30.2-0.40.5
Bone: connectivity density2.33.75.6-1.32.0-2.4
Bone: cortical apparent density0.10.10.2-0.40.1-0.4
Bone: cortical area0.91.52.10.71.4-1.4
Bone: cortical porosity0.80.81.80.40.8-1.3
Bone: cortical porosity0.60.70.90.70.8-0.9
Bone: cortical thickness2.43.97.70.42.0-2.8
Bone: cortical thickness3.64.48.2-1.31.8-2.9
Bone: cortical tissue density0.10.10.1-0.4-0.0-0.3
Condit. Reinf. active minus inactive responses0.20.20.50.7-0.2-0.5
Condit. Reinf. active-inactive response ratio0.10.10.30.6-0.0-0.1
Condit. Reinf. active responses0.30.41.10.3-1.00.1
Condit. Reinf. inactive responses0.70.92.0-0.1-1.40.9
Incentive salience index mean0.20.20.60.0-0.7-0.3
Condit. Reinf. lever presses0.81.23.4-0.1-1.90.5
Condit. Reinf. active minus inactive responses0.91.32.81.1-0.21.7
Condit. Reinf. active-inactive response ratio0.71.12.00.9-0.61.4
Condit. Reinf. active responses1.42.03.71.1-1.01.9
Condit. Reinf. inactive responses0.30.40.80.7-0.90.2
Condit. Reinf. lever presses2.74.05.01.6-2.12.2
Condit. Reinf. lever reinforcers received1.82.54.51.2-1.22.1
Conditioned reinforcement - actives0.31.12.1-1.41.1-0.1
Conditioned reinforcement - inactives0.20.40.6-0.60.6-0.8
Conditioned locomotion1.01.53.9-2.00.8-0.1
Patch foraging indifference point 0 sec0.10.30.6-0.5-0.7-0.0
Patch foraging indifference point AUC0.71.74.8-2.2-0.1-0.6
Delay disc. indifference point, 0s delay0.10.10.20.00.10.4
Delay disc. indifference point, 16s delay0.40.61.6-1.3-0.3-0.3
Delay disc. indifference point, 2s delay0.70.71.70.6-0.51.3
Delay disc. indifference point, 24s delay0.71.12.8-1.70.7-0.3
Delay disc. indifference point, 4s delay0.20.20.6-0.0-0.00.8
Delay disc. indifference point, 8s delay0.30.50.8-0.90.40.7
Indifference point function ln k0.20.51.21.10.4-0.3
Indifference point function log k0.20.51.21.10.4-0.3
Patch foraging total patch changes 0 sec0.20.60.9-1.0-0.90.2
Patch foraging total patch changes 12 sec0.60.81.9-0.4-1.40.6
Patch foraging total patch changes 18 sec0.61.52.8-1.7-0.61.1
Patch foraging total patch changes 24 sec0.31.11.7-1.3-1.00.8
Patch foraging total patch changes 6 sec0.61.02.6-0.6-1.60.3
Patch foraging time to switch 0 sec0.52.05.92.40.10.2
Patch foraging water rate 0 sec0.72.67.1-2.7-0.70.4
Patch foraging water rate 12 sec0.41.74.2-2.10.60.6
Patch foraging water rate 18 sec1.73.88.8-3.01.6-0.2
Patch foraging water rate 24 sec1.11.64.5-2.10.50.3
Patch foraging water rate 6 sec1.31.93.2-1.81.4-0.7
Seeking ratio, delayed vs. immediate footshock0.10.20.40.60.50.0
Distance traveled before self-admin0.81.82.21.2-1.51.3
Distance traveled after self-admin0.20.30.6-0.80.4-0.1
Extensor digitorum longus weight0.10.40.91.0-0.50.0
Bone: elastic displacement0.10.20.40.3-0.2-0.7
Bone: elastic work1.21.63.31.8-1.0-0.7
Bone: endosteal estimation1.02.54.52.1-0.71.6
Bone: endosteal perimeter0.51.22.70.9-0.31.6
Epididymis fat weight3.216.144.66.7-1.9-0.5
Delta time in closed arm before/after self-admin0.10.10.1-0.2-0.3-0.1
Delta time in open arm before/after self-admin0.60.81.81.3-0.4-0.6
Diff in mean of infusions in LGA sessions0.81.52.10.6-1.41.5
Delay discount exponential model param0.30.41.01.0-0.1-0.4
Extinction: sum of active levers before priming0.50.81.5-0.7-1.20.7
Active lever presses in extinction session 60.90.91.11.01.0-0.8
Bone: final force0.30.40.60.80.6-0.5
Bone: final moment0.30.60.60.70.8-0.8
Food consumed during 24 hour testing period1.12.23.70.21.7-1.9
Glucose0.71.22.81.7-0.7-0.3
Heart weight0.71.23.21.8-0.10.6
Delay discount hyperbolic model param0.10.20.40.6-0.1-0.4
Intermittent access intake day 1-15 change0.10.30.50.3-0.60.7
Intermittent access intake escalation0.10.30.70.3-0.30.9
Intermittent access intake escalation 20.50.81.31.1-0.70.8
Intermitt. access day 1 inactive lever presses0.11.73.81.9-1.10.2
Intermitt. access day 15 inactive lever presses0.21.02.51.60.3-0.7
Intermitt. access escalation Index0.10.30.40.70.2-0.6
Intermittent access day 1 total infusions0.10.41.00.51.0-0.1
Intermittent access day 15 total infusions0.30.71.30.91.10.0
Intermittent access terminal intake (last 3 days)0.30.61.51.20.5-0.2
Intermittent access total infusions0.50.60.80.90.8-0.5
Intermittent access day 1 locomotion0.40.71.7-0.31.30.6
Intermittent access day 15 total locomotion0.20.71.0-0.41.0-1.0
Intermittent access total locomotion0.60.71.2-1.11.00.2
Intermittent access standard deviation0.00.00.0-0.20.10.1
Left kidney weight0.53.710.93.3-0.2-0.5
Right kidney weight0.21.33.92.00.1-0.4
Cocaine induced anxiety0.20.61.5-0.00.51.2
Post-drug Anxiety1.21.42.51.6-0.51.2
Baseline Anxiety1.62.74.12.0-2.0-0.4
Tail length0.31.32.61.10.4-1.6
Length with tail1.15.111.03.3-0.0-2.1
Length without tail0.94.79.33.10.7-2.1
Times rat made contact with spout0.60.71.50.7-1.20.1
Lifetime Intake0.30.40.60.50.8-0.5
Liver weight, left1.42.54.42.1-1.31.1
Liver weight, right1.11.95.12.3-0.6-0.6
Locomotor activity1.42.13.10.7-1.61.8
Locomotor testing distance0.20.41.0-0.4-0.41.0
Locomotor testing rearing0.00.10.2-0.4-0.20.1
Locomotion in novel chamber0.40.61.1-1.00.6-0.4
Locomotion in novel chamber post-restriction0.92.75.7-1.30.8-2.4
Fecal boli incidents, locomotor time 10.30.81.2-1.10.31.1
Change in fecal boli incidents, locomotor task1.31.43.60.30.8-1.9
Time >=10cm from walls, locomotor time 10.00.00.10.30.2-0.2
Bouts of movement, locomotor time 10.30.30.6-0.50.80.4
Total resting periods, locomotor time 10.30.40.6-0.80.60.3
Rest time, locomotor task time 10.10.20.5-0.1-0.70.1
Distance moved, locomotor task time 10.30.70.9-0.90.9-0.7
Vertical activity count, locomotor time 10.10.40.80.50.5-0.9
Time >=10cm from walls, locomotor time 20.72.04.62.1-0.4-1.2
Bouts of movement, locomotor time 20.62.14.20.3-1.42.0
Total resting periods, locomotor time 20.62.64.80.7-1.62.2
Rest time, locomotor task time 20.61.11.7-0.0-1.21.3
Distance moved, locomotor task time 21.52.02.5-1.11.4-1.6
Vertical activity count, locomotor time 20.20.40.8-0.30.9-0.7
Light reinforcement 10.20.81.2-1.10.7-0.9
Light reinforcement 20.30.81.1-0.90.7-1.1
Bone: marrow area1.02.34.22.1-0.61.6
Bone: maximum diameter0.10.20.40.60.5-0.1
Bone: maximum force0.30.50.91.00.7-0.4
Bone: maximum moment0.30.70.80.90.8-0.7
Mean time between licks in bursts0.74.37.6-0.42.3-2.7
Mean num. licks in bursts0.41.02.10.5-1.40.8
Cd content in liver0.30.40.50.70.5-0.6
Co content in liver2.32.74.1-0.62.0-2.0
Cu content in liver0.40.40.9-0.6-0.2-1.0
Fe content in liver1.21.54.02.0-0.6-0.2
K content in liver1.11.11.6-1.2-1.30.1
Mg content in liver0.20.20.40.3-0.6-0.2
Mn content in liver0.70.81.5-1.20.21.0
Na content in liver0.91.01.2-0.8-1.1-1.1
Rb content in liver1.01.21.71.0-1.3-1.0
Se content in liver1.61.94.01.3-0.2-2.0
Sr content in liver0.90.82.1-1.40.4-0.2
Zn content in liver0.91.12.10.21.1-1.5
Bone: minimum diameter0.40.81.71.30.80.2
Time in familiar zone, hab. session 10.70.72.10.0-0.3-1.5
Time in novel zone, hab. session 11.41.53.60.7-0.71.9
Total zone transitions, hab. session 11.52.22.6-1.61.2-1.6
Total locomotion distance, hab. session 10.60.92.4-1.60.5-0.3
Locomotion velocity, hab. session 11.31.94.1-2.00.9-0.9
Time in familiar zone, hab. session 20.20.20.6-0.80.40.0
Time in novel zone, hab. session 20.70.81.51.2-0.70.6
Total zone transitions, hab. session 20.20.20.3-0.50.50.4
Total locomotion distance, hab. session 20.91.22.0-1.4-0.11.2
Locomotion velocity, hab. session 21.01.43.5-1.90.30.8
Novel to familiar place preference ratio0.30.30.60.6-0.00.8
Novelty place preference0.10.20.40.60.10.4
Time in novel zone, NPP test0.30.40.70.8-0.20.6
Total zone transitions, NPP test0.60.92.2-1.50.50.5
Total locomotion distance, NPP test1.82.55.0-2.20.21.6
Locomotion velocity, NPP test2.02.96.6-2.60.71.3
Intraocular pressure0.40.71.6-0.71.3-0.2
Delta distance traveled before/after self-admin3.03.34.9-2.21.9-1.2
Delta ambulatory time before/after self-admin1.83.04.2-2.12.0-0.9
Parametrial fat weight10.925.661.87.9-3.90.2
Pavlov. Cond. lever latency0.40.51.41.20.40.1
Pavlov. Cond. magazine entry latency0.30.40.70.9-0.8-0.2
Pavlov. Cond. change in total contacts0.30.30.7-0.3-0.9-0.0
Pavlov. Cond. index score0.10.10.2-0.1-0.5-0.4
Pavlov. Cond. latency score0.20.20.4-0.6-0.2-0.5
Pavlov. Cond. lever contacts0.20.30.6-0.5-0.80.2
Pavlov. Cond. magazine entry number0.50.71.0-0.91.0-0.3
Pavlov. Cond. intertrial magazine entries0.40.51.0-1.00.10.7
Pavlov. Cond. lever-magazine prob. diff.0.20.20.60.0-0.8-0.1
Pavlov. Cond. response bias0.30.30.60.7-0.80.0
Pavlov. Cond. lever latency2.23.15.3-2.31.7-1.1
Pavlov. Cond. magazine entry latency0.60.81.31.2-0.80.6
Pavlov. Cond. change in total contacts1.74.26.62.6-2.01.5
Pavlov. Cond. index score1.82.85.02.2-1.60.9
Pavlov. Cond. latency score1.32.03.71.9-1.40.7
Pavlov. Cond. lever contacts2.23.25.52.3-1.81.0
Pavlov. Cond. magazine entry number0.91.22.4-1.61.0-0.6
Pavlov. Cond. intertrial magazine entries0.20.30.5-0.70.30.7
Pavlov. Cond. lever-magazine prob. diff.2.03.15.82.4-1.70.8
Pavlov. Cond. response bias2.43.35.82.4-1.61.2
Time in closed arm before self-admin0.30.61.30.01.1-0.7
Time in closed arm after self-admin0.91.01.2-1.01.1-1.0
Time in open arm before self-admin0.20.20.40.30.70.3
Time in open arm after self-admin0.70.71.51.2-0.8-0.3
Bone: periosteal estimation0.51.13.01.70.50.4
Bone: periosteal perimeter0.20.30.50.60.50.7
Bone: post-yield work0.40.81.50.91.20.1
Progressive ratio test 1 active lever presses0.40.61.90.1-1.40.2
Progressive ratio test 1 breakpoint0.40.61.80.1-1.30.2
Progressive ratio test 1 inactive lever presses0.51.32.10.3-1.31.4
Progressive ratio test 2 active lever presses0.40.61.80.2-1.30.3
Progressive ratio test 2 breakpoint0.40.51.40.2-1.20.2
Progressive ratio test 2 inactive lever presses0.20.51.20.7-1.10.0
Incentive Sensitization - Responses0.10.20.4-0.1-0.6-0.4
Incentive Sensitization - Breakpoint0.10.20.4-0.2-0.7-0.4
Sum of active levers in priming session hrs 5-60.10.10.2-0.5-0.0-0.0
Progressive ratio0.51.62.0-1.31.0-1.4
Food seeking constrained by brief footshock2.63.27.8-2.81.3-0.1
Seeking ratio, punishment vs. effort0.20.41.2-0.0-0.21.1
Retroperitoneal fat weight12.455.5137.811.7-5.30.4
Reaction time number correct0.10.40.8-0.5-0.20.9
Reaction time mean minus median0.32.13.71.6-1.9-0.1
Reaction time mean minus median AUC0.31.83.11.1-1.8-1.0
Reaction time num false alarms1.83.05.7-1.52.4-1.1
Reaction time num false alarms AUC0.92.13.1-1.51.7-0.9
Reaction time trials correct on left0.10.40.8-0.5-0.20.9
Reaction time trials on left0.10.40.8-0.5-0.30.9
Reaction time mean1.32.94.22.0-2.10.7
Reaction time mean AUC1.02.43.51.9-1.90.5
Median of all reaction times1.52.33.11.8-1.80.8
Reaction time omissions0.81.33.30.7-1.8-0.4
Reaction time false alarm rate1.42.02.9-1.21.7-1.2
Reaction time premature initiation rate0.50.81.2-0.31.1-1.0
Reaction time premature initiations0.20.50.6-0.70.7-0.6
Std. dev. reaction times0.82.84.61.9-2.20.4
Reaction time trials completed0.10.40.8-0.5-0.30.9
Reaction time trials AUC0.10.51.2-0.4-0.31.1
Run reversals in cocaine runway, females0.10.10.30.5-0.1-0.2
Run reversals in cocaine runway, males1.41.52.51.1-0.91.6
Latency to leave start box in cocaine runway0.50.71.00.81.0-0.7
Latency to leave start box in cocaine runway, F1.31.62.31.51.3-0.8
Latency to leave start box in cocaine runway, M0.20.20.6-0.80.2-0.1
Std. dev. time between licks in bursts1.12.13.2-1.11.3-1.8
Total sessions with >9 infusions0.10.10.2-0.5-0.1-0.2
Short access day 1 total inactive lever presses0.30.61.20.51.1-0.4
Short access day 10 total inactive lever presses0.21.64.52.10.10.5
Short access day 1 total infusions0.71.42.4-1.61.2-0.7
Short access day 10 total infusions0.20.30.8-0.0-0.10.9
Short access total infusions0.10.20.4-0.10.6-0.4
Short access day 1 locomotion0.20.40.8-0.9-0.60.2
Short access day 10 total locomotion0.41.52.4-1.6-0.41.4
Short access total locomotion0.81.21.8-1.3-0.11.3
One hour access (0.3 mA shock)0.30.30.9-0.9-0.10.2
Compulsive drug intake0.60.82.5-1.60.2-0.1
One hour access (shock baseline)0.10.30.40.40.6-0.6
Social response proportion2.73.46.22.5-1.61.1
Social responses0.50.71.2-0.1-1.10.9
Social time0.30.50.80.8-0.90.3
Soleus weight0.10.20.30.50.2-0.5
Bone: stiffness0.30.51.20.41.1-0.2
Tibialis anterior weight0.62.25.42.3-1.1-0.0
Time to tail flick, vehicle, before self-admin1.62.05.32.30.2-0.8
Time to tail flick, vehicle, after self-admin0.20.30.91.0-0.20.1
Time to tail flick, test, before self-admin0.20.30.4-0.30.6-0.6
Time to tail flick, test, after self-admin0.30.41.1-0.21.0-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.8-0.9-0.40.5
Delta time to tail flick, test, before/after SA0.20.30.70.20.10.9
Tibia length2.15.99.53.11.9-2.2
Ambulatory time before self-admin0.51.52.21.3-1.50.9
Ambulatory time after self-admin0.40.61.2-1.10.7-0.0
Bone: tissue strength0.30.30.40.6-0.40.6
Total heroin consumption0.30.41.00.3-1.00.1
Bone: trabecular number1.83.34.9-0.62.2-2.1
Bone: trabecular spacing2.13.13.71.4-1.91.9
Bone: trabecular thickness3.04.110.6-0.51.2-3.3
Bone: trabecular tissue density0.00.10.20.5-0.1-0.1
Water consumed over 24 hours0.00.10.1-0.30.30.1
Number of responses in last shaping day0.50.71.8-1.40.5-0.2