LOC120100575

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120100575 0.13 0.08 1.6e-08 0.07 0.07 0.06 0.06 1.1e-08 1.5e-08 9.7e-08 8.3e-08
2 BLA gene expression LOC120100575 0.27 0.11 5.0e-13 0.16 0.18 0.17 0.18 1.1e-08 8.9e-10 1.4e-09 7.6e-10
3 PL gene expression LOC120100575 0.15 0.13 7.0e-11 0.1 0.08 0.09 0.09 1.2e-10 3.2e-09 5.1e-10 1.7e-10
4 Brain gene expression LOC120100575 0.06 0.04 1.1e-04 0.02 0.05 0.03 0.03 9.2e-03 3.4e-05 7.7e-04 5.3e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.0-0.20.1-0.10.0
Area under the delay curve1.51.62.8-1.11.1-1.11.7
BMI with tail5.618.019.2-4.44.2-4.24.1
BMI without tail3.47.18.1-2.82.7-2.72.4
Body weight4.820.023.0-4.64.5-4.83.9
Weight adjusted by age0.10.10.4-0.00.3-0.6-0.1
Bone surface0.91.72.2-1.41.5-1.50.5
Bone volume0.10.10.2-0.40.4-0.50.0
Breakpoint value in progressive ratio session2.32.63.0-1.71.7-1.71.3
Number of licking bursts2.42.83.4-1.81.7-1.81.2
Context. condit. distance diff. score0.70.81.21.1-1.01.0-0.4
Locomotion velocity, session 10.30.40.4-0.60.6-0.7-0.6
Locomotion distance, session 11.11.42.1-1.31.5-1.40.2
Locomotion velocity, session 20.30.40.5-0.70.6-0.7-0.6
Locomotion distance, session 20.10.20.4-0.20.4-0.1-0.6
Locomotion velocity, session 30.10.10.20.3-0.20.4-0.3
Locomotion distance, session 30.00.10.20.1-0.20.1-0.4
Stereotopy head waving bouts, day 30.10.10.5-0.00.1-0.1-0.7
Stereotopy head waving duration, day 30.20.30.4-0.50.6-0.60.4
Locomotion velocity, session 70.10.10.2-0.20.2-0.3-0.5
Locomotion distance, session 73.54.45.02.2-2.12.2-1.8
Stereotopy head waving bouts, day 71.21.42.1-1.41.3-1.40.1
Stereotopy head waving duration, day 71.21.52.3-1.41.3-1.50.1
Locomotion velocity, session 80.80.91.3-1.10.9-1.10.7
Locomotion distance, session 80.00.00.1-0.10.2-0.1-0.0
Degree of sensitization distance3.73.74.32.1-2.02.0-1.5
Degree of sensitization stereotypy1.51.62.3-1.51.3-1.50.5
Conditioned locomotion2.93.44.22.0-1.91.9-1.4
Cocaine response after cond. corrected0.30.30.50.7-0.60.60.2
Cocaine response after cond. not corrected0.20.20.30.6-0.50.5-0.1
Cocaine response before conditioning0.50.60.9-1.00.8-0.90.1
Saline control response0.40.50.9-0.71.0-0.70.5
Bone: connectivity density1.42.12.8-1.71.7-1.60.7
Bone: cortical apparent density1.82.42.91.4-1.31.7-1.7
Bone: cortical area0.60.91.4-0.91.2-0.90.8
Bone: cortical porosity3.43.75.3-1.91.6-1.92.3
Bone: cortical porosity2.12.32.9-1.51.3-1.51.7
Bone: cortical thickness0.10.20.5-0.20.4-0.10.7
Bone: cortical thickness0.30.40.7-0.70.8-0.60.4
Bone: cortical tissue density1.92.53.11.5-1.41.7-1.8
Condit. Reinf. active minus inactive responses0.40.50.8-0.50.8-0.60.9
Condit. Reinf. active-inactive response ratio0.80.81.8-0.60.8-0.71.3
Condit. Reinf. active responses2.12.53.6-1.41.9-1.41.6
Condit. Reinf. inactive responses2.42.94.4-1.82.1-1.71.0
Incentive salience index mean0.60.70.9-0.70.9-0.60.9
Condit. Reinf. lever presses0.40.51.0-0.81.0-0.60.4
Condit. Reinf. active minus inactive responses0.50.70.7-0.80.8-0.80.8
Condit. Reinf. active-inactive response ratio0.10.20.20.4-0.40.40.4
Condit. Reinf. active responses1.42.02.6-1.61.6-1.40.8
Condit. Reinf. inactive responses4.35.37.2-2.72.7-2.31.3
Condit. Reinf. lever presses1.41.82.5-1.31.3-1.11.6
Condit. Reinf. lever reinforcers received1.21.82.4-1.51.5-1.30.8
Conditioned reinforcement - actives5.35.35.52.3-2.22.3-2.4
Conditioned reinforcement - inactives0.91.01.41.2-1.01.2-0.6
Conditioned locomotion0.50.51.20.5-0.50.7-1.1
Patch foraging indifference point 0 sec1.42.32.7-1.31.4-1.61.6
Patch foraging indifference point AUC1.11.22.3-1.51.2-1.10.1
Delay disc. indifference point, 0s delay1.01.12.30.8-0.90.9-1.5
Delay disc. indifference point, 16s delay2.22.23.6-1.31.4-1.31.9
Delay disc. indifference point, 2s delay0.30.30.4-0.60.4-0.50.7
Delay disc. indifference point, 24s delay0.10.10.30.00.1-0.10.6
Delay disc. indifference point, 4s delay1.92.02.1-1.41.3-1.41.4
Delay disc. indifference point, 8s delay0.10.10.40.1-0.1-0.00.6
Indifference point function ln k0.50.70.80.9-0.90.90.5
Indifference point function log k0.50.70.80.9-0.90.90.5
Patch foraging total patch changes 0 sec1.42.32.6-1.31.5-1.61.6
Patch foraging total patch changes 12 sec0.00.00.0-0.00.1-0.0-0.2
Patch foraging total patch changes 18 sec1.11.41.8-1.21.2-1.31.0
Patch foraging total patch changes 24 sec3.23.94.6-2.12.1-2.11.4
Patch foraging total patch changes 6 sec1.92.83.5-1.81.7-1.91.4
Patch foraging time to switch 0 sec2.03.14.12.0-1.81.9-1.3
Patch foraging water rate 0 sec0.30.50.8-0.90.7-0.80.5
Patch foraging water rate 12 sec0.20.40.6-0.70.6-0.8-0.0
Patch foraging water rate 18 sec0.30.40.6-0.60.7-0.70.1
Patch foraging water rate 24 sec0.30.40.5-0.60.7-0.7-0.3
Patch foraging water rate 6 sec0.00.10.2-0.0-0.00.1-0.5
Seeking ratio, delayed vs. immediate footshock3.43.95.3-1.92.0-1.72.3
Distance traveled before self-admin1.41.52.0-1.31.4-1.30.8
Distance traveled after self-admin3.33.74.5-2.12.0-2.11.4
Extensor digitorum longus weight4.818.919.8-4.34.3-4.44.4
Bone: elastic displacement0.70.81.01.0-0.90.90.6
Bone: elastic work1.21.52.31.5-1.41.4-0.2
Bone: endosteal estimation1.12.43.2-1.71.7-1.80.8
Bone: endosteal perimeter0.30.61.0-0.91.0-0.80.1
Epididymis fat weight2.76.47.6-2.82.7-2.61.9
Delta time in closed arm before/after self-admin1.11.01.3-1.11.0-1.10.8
Delta time in open arm before/after self-admin0.40.40.60.6-0.80.5-0.7
Diff in mean of infusions in LGA sessions0.60.61.0-0.70.8-0.71.0
Delay discount exponential model param1.51.63.01.0-1.01.1-1.7
Extinction: sum of active levers before priming0.10.10.1-0.40.4-0.30.1
Active lever presses in extinction session 60.00.00.10.1-0.20.00.4
Bone: final force3.25.26.1-2.32.5-2.31.9
Bone: final moment3.15.05.7-2.32.4-2.32.0
Food consumed during 24 hour testing period0.10.10.3-0.10.10.10.5
Glucose0.60.91.31.1-0.91.0-0.7
Heart weight0.91.32.9-0.81.1-0.81.7
Delay discount hyperbolic model param1.31.32.51.0-0.91.0-1.6
Intermittent access intake day 1-15 change2.52.53.11.5-1.51.5-1.8
Intermittent access intake escalation2.72.73.01.7-1.71.6-1.5
Intermittent access intake escalation 21.01.01.21.1-1.00.9-1.1
Intermitt. access day 1 inactive lever presses0.10.10.2-0.20.4-0.20.5
Intermitt. access day 15 inactive lever presses0.30.30.6-0.40.5-0.40.8
Intermitt. access escalation Index0.50.50.70.7-0.80.8-0.2
Intermittent access day 1 total infusions1.41.62.51.0-1.11.3-1.6
Intermittent access day 15 total infusions3.94.34.82.0-2.02.1-2.2
Intermittent access terminal intake (last 3 days)3.74.05.51.8-1.82.0-2.3
Intermittent access total infusions1.71.83.11.2-1.11.3-1.8
Intermittent access day 1 locomotion0.10.10.30.3-0.20.4-0.5
Intermittent access day 15 total locomotion1.41.52.01.4-1.21.3-1.0
Intermittent access total locomotion0.20.20.50.5-0.20.4-0.7
Intermittent access standard deviation0.10.10.30.5-0.30.3-0.3
Left kidney weight0.10.40.6-0.70.6-0.80.3
Right kidney weight0.31.01.4-1.00.9-1.20.8
Cocaine induced anxiety1.41.71.8-1.21.4-1.31.3
Post-drug Anxiety1.71.92.1-1.41.4-1.31.4
Baseline Anxiety0.20.20.30.4-0.50.5-0.2
Tail length0.20.50.6-0.80.8-0.80.4
Length with tail0.82.94.1-1.71.7-2.01.3
Length without tail1.32.93.6-1.61.7-1.91.6
Times rat made contact with spout0.50.61.11.0-0.61.1-0.3
Lifetime Intake1.41.62.71.1-1.01.2-1.6
Liver weight, left0.00.00.00.1-0.20.1-0.1
Liver weight, right0.10.20.30.5-0.50.5-0.4
Locomotor activity0.50.71.6-0.80.6-0.51.3
Locomotor testing distance3.86.47.8-2.72.4-2.22.8
Locomotor testing rearing0.50.71.3-0.90.7-0.51.1
Locomotion in novel chamber0.91.11.7-0.90.9-1.31.0
Locomotion in novel chamber post-restriction1.01.11.6-1.11.1-1.30.8
Fecal boli incidents, locomotor time 10.91.01.41.2-1.01.1-0.5
Change in fecal boli incidents, locomotor task1.21.11.5-1.11.2-1.20.6
Time >=10cm from walls, locomotor time 10.20.20.50.3-0.30.3-0.7
Bouts of movement, locomotor time 10.80.91.31.1-1.10.9-0.6
Total resting periods, locomotor time 11.71.82.61.6-1.51.4-0.7
Rest time, locomotor task time 12.12.43.11.8-1.61.7-0.8
Distance moved, locomotor task time 11.82.02.9-1.71.5-1.60.5
Vertical activity count, locomotor time 11.71.82.6-1.61.4-1.50.6
Time >=10cm from walls, locomotor time 21.01.11.20.9-1.01.0-1.1
Bouts of movement, locomotor time 22.42.53.21.8-1.61.8-1.1
Total resting periods, locomotor time 21.21.31.81.3-1.21.3-0.6
Rest time, locomotor task time 20.20.20.40.6-0.40.50.2
Distance moved, locomotor task time 21.01.11.7-1.31.1-1.30.1
Vertical activity count, locomotor time 20.40.50.6-0.80.7-0.8-0.3
Light reinforcement 10.40.81.20.9-0.91.1-0.5
Light reinforcement 20.20.20.40.5-0.60.5-0.3
Bone: marrow area1.22.53.4-1.71.8-1.80.9
Bone: maximum diameter0.30.61.0-0.71.0-0.90.2
Bone: maximum force1.22.12.5-1.51.6-1.41.4
Bone: maximum moment1.22.12.3-1.41.5-1.41.5
Mean time between licks in bursts0.10.10.20.1-0.40.2-0.3
Mean num. licks in bursts2.83.34.62.1-1.82.1-0.9
Cd content in liver1.81.92.11.4-1.41.3-1.4
Co content in liver0.30.30.7-0.30.6-0.40.8
Cu content in liver0.60.70.9-0.80.6-0.90.9
Fe content in liver0.30.41.3-0.30.3-0.31.1
K content in liver0.10.10.20.2-0.50.0-0.3
Mg content in liver0.50.50.70.8-0.90.7-0.5
Mn content in liver1.51.72.21.3-1.51.3-1.1
Na content in liver1.31.42.0-1.21.4-1.30.6
Rb content in liver1.21.52.0-1.21.1-1.21.4
Se content in liver1.11.33.20.9-1.00.7-1.8
Sr content in liver0.20.20.3-0.30.4-0.6-0.3
Zn content in liver0.50.50.90.9-0.80.70.0
Bone: minimum diameter1.01.82.4-1.31.6-1.31.2
Time in familiar zone, hab. session 10.20.20.30.5-0.40.4-0.4
Time in novel zone, hab. session 10.10.10.2-0.40.4-0.3-0.0
Total zone transitions, hab. session 12.23.04.2-1.61.8-1.42.1
Total locomotion distance, hab. session 11.42.02.5-1.41.6-1.31.4
Locomotion velocity, hab. session 11.92.73.1-1.61.7-1.61.7
Time in familiar zone, hab. session 22.12.12.31.3-1.51.5-1.5
Time in novel zone, hab. session 21.91.92.2-1.31.4-1.51.4
Total zone transitions, hab. session 22.33.04.1-1.72.0-1.81.3
Total locomotion distance, hab. session 21.01.42.1-1.01.4-1.20.9
Locomotion velocity, hab. session 21.31.82.8-1.31.7-1.40.9
Novel to familiar place preference ratio0.30.30.7-0.50.2-0.40.8
Novelty place preference0.40.40.9-0.50.3-0.41.0
Time in novel zone, NPP test0.70.71.6-0.80.6-0.71.2
Total zone transitions, NPP test0.40.50.9-0.81.0-0.7-0.2
Total locomotion distance, NPP test0.20.30.6-0.50.8-0.5-0.2
Locomotion velocity, NPP test0.10.20.3-0.30.6-0.4-0.4
Intraocular pressure0.81.11.41.1-1.21.1-0.8
Delta distance traveled before/after self-admin0.20.20.4-0.60.3-0.60.3
Delta ambulatory time before/after self-admin0.20.20.4-0.60.3-0.60.3
Parametrial fat weight0.30.60.8-0.70.8-0.90.6
Pavlov. Cond. lever latency0.20.30.40.7-0.60.5-0.0
Pavlov. Cond. magazine entry latency1.62.02.6-1.61.4-1.61.0
Pavlov. Cond. change in total contacts0.10.10.2-0.40.5-0.40.1
Pavlov. Cond. index score1.41.82.5-1.61.5-1.50.5
Pavlov. Cond. latency score0.91.21.7-1.31.2-1.20.3
Pavlov. Cond. lever contacts0.50.61.0-1.00.8-0.9-0.1
Pavlov. Cond. magazine entry number2.12.63.41.8-1.71.8-1.0
Pavlov. Cond. intertrial magazine entries1.11.31.91.4-1.21.3-0.5
Pavlov. Cond. lever-magazine prob. diff.1.62.02.8-1.71.5-1.60.6
Pavlov. Cond. response bias1.62.02.7-1.61.5-1.60.7
Pavlov. Cond. lever latency3.95.26.42.5-2.42.4-1.8
Pavlov. Cond. magazine entry latency1.21.32.7-1.01.0-0.91.6
Pavlov. Cond. change in total contacts5.88.19.4-3.12.9-2.92.4
Pavlov. Cond. index score5.16.57.0-2.62.6-2.52.5
Pavlov. Cond. latency score3.94.85.1-2.32.2-2.12.2
Pavlov. Cond. lever contacts4.25.77.2-2.72.5-2.51.7
Pavlov. Cond. magazine entry number4.45.46.52.3-2.32.1-2.5
Pavlov. Cond. intertrial magazine entries0.10.10.20.3-0.30.4-0.5
Pavlov. Cond. lever-magazine prob. diff.4.96.27.0-2.62.6-2.42.3
Pavlov. Cond. response bias5.47.38.5-2.92.8-2.82.4
Time in closed arm before self-admin0.91.01.30.9-1.00.9-1.1
Time in closed arm after self-admin0.20.20.40.3-0.30.2-0.6
Time in open arm before self-admin5.05.45.8-2.42.4-2.22.3
Time in open arm after self-admin0.30.40.5-0.70.5-0.50.7
Bone: periosteal estimation1.02.12.8-1.51.7-1.60.9
Bone: periosteal perimeter0.20.40.8-0.60.9-0.60.1
Bone: post-yield work0.20.20.4-0.60.4-0.40.4
Progressive ratio test 1 active lever presses0.10.10.2-0.30.3-0.2-0.5
Progressive ratio test 1 breakpoint0.10.10.3-0.30.3-0.1-0.5
Progressive ratio test 1 inactive lever presses0.30.30.80.5-0.40.4-0.9
Progressive ratio test 2 active lever presses3.63.86.11.7-1.81.8-2.5
Progressive ratio test 2 breakpoint2.22.54.91.3-1.31.3-2.2
Progressive ratio test 2 inactive lever presses1.31.41.61.2-1.11.3-1.3
Incentive Sensitization - Responses2.72.84.41.4-1.51.5-2.1
Incentive Sensitization - Breakpoint2.62.64.31.4-1.51.4-2.1
Sum of active levers in priming session hrs 5-60.10.10.1-0.30.3-0.4-0.1
Progressive ratio0.30.30.50.6-0.50.7-0.3
Food seeking constrained by brief footshock0.40.51.4-0.30.7-0.21.2
Seeking ratio, punishment vs. effort0.70.91.0-1.01.0-0.91.0
Retroperitoneal fat weight1.13.64.7-2.12.1-2.21.1
Reaction time number correct0.71.13.20.6-0.60.6-1.8
Reaction time mean minus median4.35.710.2-2.02.0-2.23.2
Reaction time mean minus median AUC2.32.95.3-1.51.5-1.42.3
Reaction time num false alarms0.00.00.00.1-0.10.20.1
Reaction time num false alarms AUC0.00.10.10.1-0.20.3-0.3
Reaction time trials correct on left0.71.13.20.6-0.60.6-1.8
Reaction time trials on left0.71.02.90.6-0.60.6-1.7
Reaction time mean2.23.17.2-1.21.4-1.42.7
Reaction time mean AUC2.22.97.2-1.11.3-1.32.7
Median of all reaction times1.01.44.1-0.70.8-0.72.0
Reaction time omissions2.23.08.4-1.00.9-1.32.9
Reaction time false alarm rate0.10.20.5-0.40.3-0.30.7
Reaction time premature initiation rate1.72.32.81.5-1.71.7-1.2
Reaction time premature initiations2.02.83.51.5-1.71.6-1.9
Std. dev. reaction times4.36.110.5-2.12.1-2.23.2
Reaction time trials completed0.71.02.90.6-0.60.6-1.7
Reaction time trials AUC0.70.92.70.6-0.60.6-1.7
Run reversals in cocaine runway, females0.70.71.0-0.81.0-0.90.2
Run reversals in cocaine runway, males0.90.91.2-1.11.0-0.90.8
Latency to leave start box in cocaine runway0.30.41.1-0.0-0.30.51.1
Latency to leave start box in cocaine runway, F0.60.71.50.5-0.91.20.1
Latency to leave start box in cocaine runway, M0.30.31.0-0.10.0-0.21.0
Std. dev. time between licks in bursts0.50.61.2-0.60.8-0.61.1
Total sessions with >9 infusions0.30.30.70.6-0.50.80.0
Short access day 1 total inactive lever presses0.30.40.60.5-0.40.7-0.8
Short access day 10 total inactive lever presses0.50.60.9-0.60.8-0.70.9
Short access day 1 total infusions0.20.20.40.6-0.30.5-0.3
Short access day 10 total infusions0.00.10.1-0.30.3-0.0-0.2
Short access total infusions0.40.40.80.6-0.40.7-0.9
Short access day 1 locomotion0.10.10.20.10.3-0.00.4
Short access day 10 total locomotion0.30.30.4-0.40.6-0.60.6
Short access total locomotion0.00.10.10.3-0.00.3-0.2
One hour access (0.3 mA shock)2.22.65.61.4-1.21.2-2.4
Compulsive drug intake0.50.50.7-0.60.8-0.90.4
One hour access (shock baseline)4.35.06.12.1-2.12.2-2.5
Social response proportion7.78.310.33.2-3.03.0-2.2
Social responses0.81.01.41.1-0.80.9-1.2
Social time3.54.65.92.4-2.42.3-1.3
Soleus weight1.02.93.2-1.81.6-1.61.8
Bone: stiffness1.32.12.6-1.61.6-1.41.1
Tibialis anterior weight7.023.927.6-5.25.1-5.23.9
Time to tail flick, vehicle, before self-admin0.20.20.30.5-0.40.50.5
Time to tail flick, vehicle, after self-admin2.22.33.71.4-1.51.2-1.9
Time to tail flick, test, before self-admin0.20.20.7-0.20.2-0.20.8
Time to tail flick, test, after self-admin0.10.10.4-0.10.1-0.10.7
Delta time to tail flick, vehicle, before/after SA4.03.96.21.7-1.91.6-2.5
Delta time to tail flick, test, before/after SA0.00.00.0-0.10.0-0.0-0.1
Tibia length1.13.27.81.3-1.41.1-2.8
Ambulatory time before self-admin0.40.40.7-0.70.8-0.60.1
Ambulatory time after self-admin1.51.72.5-1.61.4-1.40.6
Bone: tissue strength0.30.31.2-0.1-0.0-0.11.1
Total heroin consumption0.70.91.0-0.91.0-0.91.0
Bone: trabecular number0.20.30.6-0.70.5-0.6-0.0
Bone: trabecular spacing0.70.91.11.0-0.91.0-0.9
Bone: trabecular thickness0.60.70.80.8-0.90.8-0.8
Bone: trabecular tissue density2.43.44.42.0-2.12.1-1.0
Water consumed over 24 hours0.10.10.3-0.10.3-0.10.6
Number of responses in last shaping day0.10.10.1-0.10.3-0.30.1